Wall clock time and date at job start Tue Mar 31 2020 07:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.40032 * 126.14466 * 2 1 4 4 C 1.30966 * 108.86221 * 180.28659 * 3 2 1 5 5 C 1.39245 * 108.81036 * 359.75811 * 4 3 2 6 6 C 1.36755 * 126.13993 * 179.87473 * 2 1 3 7 7 C 1.46499 * 126.51318 * 359.97438 * 6 2 1 8 8 C 1.35172 * 120.00117 * 184.85724 * 7 6 2 9 9 C 1.46265 * 119.99991 * 185.28410 * 8 7 6 10 10 N 1.31649 * 125.21891 * 354.81062 * 9 8 7 11 11 C 1.35444 * 109.66610 * 180.02562 * 10 9 8 12 12 C 1.39923 * 133.20830 * 179.97438 * 11 10 9 13 13 C 1.37643 * 119.78250 * 180.02562 * 12 11 10 14 14 C 1.38770 * 120.54221 * 359.97438 * 13 12 11 15 15 C 1.37970 * 120.46895 * 0.02562 * 14 13 12 16 16 C 1.38732 * 119.86794 * 359.73154 * 15 14 13 17 17 N 1.37713 * 125.22492 * 174.85766 * 9 8 7 18 18 C 1.36970 * 126.45256 * 359.93710 * 17 9 8 19 19 H 1.08001 * 120.00550 * 328.03618 * 18 17 9 20 20 C 1.39028 * 120.00100 * 148.03730 * 18 17 9 21 21 N 1.31328 * 119.99661 * 335.32663 * 20 18 17 22 22 Si 1.86798 * 120.00333 * 155.32985 * 20 18 17 23 23 H 1.48497 * 109.47425 * 179.97438 * 22 20 18 24 24 H 1.48505 * 109.46992 * 299.99672 * 22 20 18 25 25 H 1.48503 * 109.47363 * 59.99772 * 22 20 18 26 26 H 1.08995 * 109.47381 * 274.31947 * 1 2 3 27 27 H 1.09004 * 109.46544 * 34.32275 * 1 2 3 28 28 H 1.08996 * 109.47320 * 154.31499 * 1 2 3 29 29 H 1.07994 * 125.59559 * 179.80097 * 4 3 2 30 30 H 1.07996 * 126.18078 * 180.02562 * 5 4 3 31 31 H 1.08003 * 119.99735 * 4.85515 * 7 6 2 32 32 H 1.07995 * 120.00105 * 5.27884 * 8 7 6 33 33 H 1.08009 * 120.10679 * 0.02562 * 12 11 10 34 34 H 1.08008 * 119.72787 * 180.02562 * 13 12 11 35 35 H 1.07991 * 119.76612 * 179.97438 * 14 13 12 36 36 H 1.07992 * 120.06328 * 179.97438 * 15 14 13 37 37 H 0.97001 * 120.00414 * 354.11633 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2910 1.1308 0.0000 4 6 3.5415 0.7417 -0.0062 5 6 3.5786 -0.6502 -0.0049 6 6 2.2715 -1.1044 0.0024 7 6 1.8347 -2.5027 0.0060 8 6 2.7466 -3.4954 0.1072 9 6 2.3238 -4.8911 -0.0052 10 7 1.0769 -5.3008 -0.1076 11 6 1.0466 -6.6522 -0.1925 12 6 0.0075 -7.5815 -0.3134 13 6 0.2965 -8.9257 -0.3777 14 6 1.6108 -9.3678 -0.3241 15 6 2.6480 -8.4659 -0.2049 16 6 2.3779 -7.1065 -0.1437 17 7 3.1689 -5.9784 -0.0193 18 6 4.5355 -5.9481 0.0668 19 1 5.0843 -5.1143 -0.3455 20 6 5.2164 -6.9907 0.6851 21 7 4.6081 -7.7307 1.5835 22 14 6.9963 -7.3391 0.2379 23 1 7.4896 -8.4927 1.0323 24 1 7.0898 -7.6580 -1.2095 25 1 7.8248 -6.1431 0.5358 26 1 -0.3634 0.0774 1.0247 27 1 -0.3632 0.8488 -0.5795 28 1 -0.3634 -0.9261 -0.4454 29 1 4.4026 1.3935 -0.0108 30 1 4.4670 -1.2643 -0.0085 31 1 0.7841 -2.7405 -0.0722 32 1 3.7873 -3.2580 0.2710 33 1 -1.0179 -7.2450 -0.3562 34 1 -0.5063 -9.6422 -0.4715 35 1 1.8232 -10.4254 -0.3751 36 1 3.6683 -8.8172 -0.1633 37 1 3.7137 -7.4984 1.8783 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352008464.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:12 Heat of formation + Delta-G solvation = 156.428711 kcal Electronic energy + Delta-G solvation = -22138.763751 eV Core-core repulsion = 18883.422235 eV Total energy + Delta-G solvation = -3255.341516 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 294.118 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.00874 -40.70838 -36.47221 -34.79503 -33.78877 -33.02089 -31.22373 -29.61559 -29.31429 -27.33133 -26.67438 -25.12058 -23.64458 -21.40082 -21.25905 -20.68523 -19.99532 -18.71125 -17.80318 -17.07337 -16.00641 -15.70128 -15.29340 -14.83003 -14.62930 -14.26559 -14.13864 -13.84161 -13.40567 -13.27642 -12.85481 -12.76986 -12.68883 -12.38278 -12.25463 -11.46278 -11.30940 -11.13756 -11.09295 -10.90262 -10.55081 -10.51353 -10.40711 -10.20270 -9.79524 -9.06860 -8.97423 -8.84139 -8.19594 -7.70289 -7.13616 -6.92069 -4.70738 0.97769 1.98439 2.47738 2.59252 2.68917 3.00701 3.05198 3.23477 3.23622 3.72072 4.02022 4.16516 4.59213 4.63440 4.80380 4.90584 5.10836 5.17997 5.22420 5.37287 5.44472 5.66505 5.75242 5.82407 5.89908 5.97777 6.06087 6.33939 6.38210 6.48203 6.64522 6.73317 6.79470 6.82670 6.89672 7.15044 7.20621 7.35056 7.44527 7.59976 7.68354 7.84245 7.85359 8.36879 8.86745 9.00185 9.88985 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.014228 B = 0.004841 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.524098 B = 5782.714714 C = 7614.032500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.375 5.375 3 N -0.308 5.308 4 C 0.046 3.954 5 C -0.272 4.272 6 C 0.135 3.865 7 C -0.119 4.119 8 C 0.003 3.997 9 C 0.201 3.799 10 N -0.511 5.511 11 C 0.042 3.958 12 C -0.087 4.087 13 C -0.137 4.137 14 C -0.149 4.149 15 C -0.064 4.064 16 C 0.001 3.999 17 N -0.270 5.270 18 C -0.423 4.423 19 H 0.110 0.890 20 C 0.025 3.975 21 N -0.809 5.809 22 Si 1.078 2.922 23 H -0.270 1.270 24 H -0.274 1.274 25 H -0.274 1.274 26 H 0.073 0.927 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.181 0.819 30 H 0.149 0.851 31 H 0.134 0.866 32 H 0.132 0.868 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.113 0.887 36 H 0.125 0.875 37 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.217 5.608 -2.449 6.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.158 5.158 3 N -0.130 5.130 4 C -0.138 4.138 5 C -0.301 4.301 6 C 0.009 3.991 7 C -0.143 4.143 8 C -0.020 4.020 9 C -0.051 4.051 10 N -0.234 5.234 11 C -0.086 4.086 12 C -0.107 4.107 13 C -0.158 4.158 14 C -0.170 4.170 15 C -0.084 4.084 16 C -0.115 4.115 17 N 0.062 4.938 18 C -0.553 4.553 19 H 0.128 0.872 20 C -0.192 4.192 21 N -0.434 5.434 22 Si 0.900 3.100 23 H -0.195 1.195 24 H -0.200 1.200 25 H -0.199 1.199 26 H 0.091 0.909 27 H 0.103 0.897 28 H 0.109 0.891 29 H 0.198 0.802 30 H 0.167 0.833 31 H 0.151 0.849 32 H 0.150 0.850 33 H 0.130 0.870 34 H 0.130 0.870 35 H 0.131 0.869 36 H 0.142 0.858 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.427 6.184 -2.106 6.969 hybrid contribution -0.036 -0.164 -0.107 0.199 sum -2.463 6.021 -2.213 6.871 Atomic orbital electron populations 1.21832 0.74404 1.04370 1.03307 1.48812 1.06288 1.03171 1.57563 1.77203 1.01936 1.08046 1.25839 1.23574 0.94937 0.95166 1.00130 1.21810 0.96015 0.94766 1.17462 1.20181 0.90461 0.88193 1.00301 1.20927 1.00191 0.86914 1.06288 1.20828 0.98982 0.86910 0.95274 1.21254 0.85087 0.89212 1.09556 1.70499 1.17952 1.09688 1.25307 1.18858 0.92189 0.90422 1.07120 1.19986 0.96534 0.91365 1.02781 1.20594 0.96155 0.94570 1.04471 1.20632 0.92332 0.98205 1.05791 1.20286 0.99792 0.89452 0.98904 1.18915 0.91410 0.89673 1.11490 1.41451 1.06044 1.03677 1.42638 1.20758 0.78734 1.13198 1.42582 0.87228 1.26946 1.07798 0.92183 0.92245 1.70621 1.16477 1.36986 1.19340 0.83378 0.71516 0.77798 0.77262 1.19481 1.19954 1.19884 0.90864 0.89669 0.89099 0.80239 0.83312 0.84858 0.84990 0.86995 0.86962 0.86882 0.85759 0.89627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.12 11.35 59.85 0.68 1.80 16 2 N -0.37 -5.66 4.07 -64.07 -0.26 -5.92 16 3 N -0.31 -4.82 12.54 30.52 0.38 -4.44 16 4 C 0.05 0.64 11.96 -17.55 -0.21 0.43 16 5 C -0.27 -4.10 10.20 -39.16 -0.40 -4.50 16 6 C 0.13 2.17 6.91 -82.29 -0.57 1.61 16 7 C -0.12 -2.05 9.37 -37.35 -0.35 -2.40 16 8 C 0.00 0.05 9.27 -37.45 -0.35 -0.30 16 9 C 0.20 4.71 7.59 -154.01 -1.17 3.54 16 10 N -0.51 -12.17 10.75 -8.85 -0.10 -12.26 16 11 C 0.04 1.01 7.21 -84.69 -0.61 0.40 16 12 C -0.09 -1.76 10.11 -39.17 -0.40 -2.16 16 13 C -0.14 -2.52 10.01 -39.60 -0.40 -2.91 16 14 C -0.15 -2.91 10.03 -39.48 -0.40 -3.30 16 15 C -0.06 -1.47 8.36 -39.50 -0.33 -1.80 16 16 C 0.00 0.03 5.59 -83.80 -0.47 -0.43 16 17 N -0.27 -6.74 2.71 -57.48 -0.16 -6.90 16 18 C -0.42 -10.26 9.41 -14.96 -0.14 -10.40 16 19 H 0.11 2.49 7.78 -52.49 -0.41 2.08 16 20 C 0.03 0.60 4.35 -17.47 -0.08 0.52 16 21 N -0.81 -20.47 11.47 55.50 0.64 -19.83 16 22 Si 1.08 20.11 29.99 -169.99 -5.10 15.02 16 23 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 24 H -0.27 -4.96 7.11 56.52 0.40 -4.56 16 25 H -0.27 -4.78 7.11 56.52 0.40 -4.38 16 26 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.09 0.90 7.24 -51.93 -0.38 0.53 16 29 H 0.18 1.83 8.06 -52.49 -0.42 1.41 16 30 H 0.15 2.04 7.33 -52.49 -0.38 1.65 16 31 H 0.13 2.28 7.00 -52.48 -0.37 1.91 16 32 H 0.13 2.39 6.66 -52.49 -0.35 2.04 16 33 H 0.11 2.00 8.06 -52.48 -0.42 1.58 16 34 H 0.11 1.66 8.06 -52.48 -0.42 1.23 16 35 H 0.11 1.87 8.06 -52.49 -0.42 1.45 16 36 H 0.12 2.94 6.21 -52.49 -0.33 2.62 16 37 H 0.29 7.87 6.89 -40.82 -0.28 7.59 16 LS Contribution 322.17 15.07 4.86 4.86 Total: -1.00 -29.54 322.17 -8.74 -38.28 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -3.83 Total: 11.12 kcal Atomic # 6 Polarization: -14.75 SS G_CDS: -5.18 Total: -19.92 kcal Atomic # 7 Polarization: -49.85 SS G_CDS: 0.51 Total: -49.35 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.10 Total: 15.02 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.54 -8.74 -38.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352008464.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.709 kcal (2) G-P(sol) polarization free energy of solvation -29.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 165.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 156.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds