Wall clock time and date at job start Tue Mar 31 2020 07:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.40032 * 126.14466 * 2 1 4 4 C 1.30966 * 108.86221 * 180.28659 * 3 2 1 5 5 C 1.39245 * 108.81036 * 359.75811 * 4 3 2 6 6 C 1.36755 * 126.13993 * 179.87473 * 2 1 3 7 7 C 1.46499 * 126.51318 * 359.97438 * 6 2 1 8 8 C 1.35172 * 120.00117 * 184.85724 * 7 6 2 9 9 C 1.46265 * 119.99991 * 185.28410 * 8 7 6 10 10 N 1.31649 * 125.21891 * 354.81062 * 9 8 7 11 11 C 1.35444 * 109.66610 * 180.02562 * 10 9 8 12 12 C 1.39923 * 133.20830 * 179.97438 * 11 10 9 13 13 C 1.37643 * 119.78250 * 180.02562 * 12 11 10 14 14 C 1.38770 * 120.54221 * 359.97438 * 13 12 11 15 15 C 1.37970 * 120.46895 * 0.02562 * 14 13 12 16 16 C 1.38732 * 119.86794 * 359.73154 * 15 14 13 17 17 N 1.37713 * 125.22492 * 174.85766 * 9 8 7 18 18 C 1.36970 * 126.45256 * 359.93710 * 17 9 8 19 19 H 1.08001 * 120.00550 * 328.03618 * 18 17 9 20 20 C 1.39028 * 120.00100 * 148.03730 * 18 17 9 21 21 N 1.31328 * 119.99661 * 335.32663 * 20 18 17 22 22 Si 1.86798 * 120.00333 * 155.32985 * 20 18 17 23 23 H 1.48497 * 109.47425 * 179.97438 * 22 20 18 24 24 H 1.48505 * 109.46992 * 299.99672 * 22 20 18 25 25 H 1.48503 * 109.47363 * 59.99772 * 22 20 18 26 26 H 1.08995 * 109.47381 * 274.31947 * 1 2 3 27 27 H 1.09004 * 109.46544 * 34.32275 * 1 2 3 28 28 H 1.08996 * 109.47320 * 154.31499 * 1 2 3 29 29 H 1.07994 * 125.59559 * 179.80097 * 4 3 2 30 30 H 1.07996 * 126.18078 * 180.02562 * 5 4 3 31 31 H 1.08003 * 119.99735 * 4.85515 * 7 6 2 32 32 H 1.07995 * 120.00105 * 5.27884 * 8 7 6 33 33 H 1.08009 * 120.10679 * 0.02562 * 12 11 10 34 34 H 1.08008 * 119.72787 * 180.02562 * 13 12 11 35 35 H 1.07991 * 119.76612 * 179.97438 * 14 13 12 36 36 H 1.07992 * 120.06328 * 179.97438 * 15 14 13 37 37 H 0.97001 * 120.00414 * 354.11633 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2910 1.1308 0.0000 4 6 3.5415 0.7417 -0.0062 5 6 3.5786 -0.6502 -0.0049 6 6 2.2715 -1.1044 0.0024 7 6 1.8347 -2.5027 0.0060 8 6 2.7466 -3.4954 0.1072 9 6 2.3238 -4.8911 -0.0052 10 7 1.0769 -5.3008 -0.1076 11 6 1.0466 -6.6522 -0.1925 12 6 0.0075 -7.5815 -0.3134 13 6 0.2965 -8.9257 -0.3777 14 6 1.6108 -9.3678 -0.3241 15 6 2.6480 -8.4659 -0.2049 16 6 2.3779 -7.1065 -0.1437 17 7 3.1689 -5.9784 -0.0193 18 6 4.5355 -5.9481 0.0668 19 1 5.0843 -5.1143 -0.3455 20 6 5.2164 -6.9907 0.6851 21 7 4.6081 -7.7307 1.5835 22 14 6.9963 -7.3391 0.2379 23 1 7.4896 -8.4927 1.0323 24 1 7.0898 -7.6580 -1.2095 25 1 7.8248 -6.1431 0.5358 26 1 -0.3634 0.0774 1.0247 27 1 -0.3632 0.8488 -0.5795 28 1 -0.3634 -0.9261 -0.4454 29 1 4.4026 1.3935 -0.0108 30 1 4.4670 -1.2643 -0.0085 31 1 0.7841 -2.7405 -0.0722 32 1 3.7873 -3.2580 0.2710 33 1 -1.0179 -7.2450 -0.3562 34 1 -0.5063 -9.6422 -0.4715 35 1 1.8232 -10.4254 -0.3751 36 1 3.6683 -8.8172 -0.1633 37 1 3.7137 -7.4984 1.8783 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352008464.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:12 Heat of formation + Delta-G solvation = 141.311107 kcal Electronic energy + Delta-G solvation = -22139.419299 eV Core-core repulsion = 18883.422235 eV Total energy + Delta-G solvation = -3255.997064 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 294.118 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.70597 -41.89640 -38.08348 -36.50351 -35.23148 -34.10525 -32.97227 -31.13957 -30.83617 -28.84610 -27.68305 -26.88611 -25.11350 -23.03761 -22.76550 -22.08356 -21.40631 -20.21501 -19.37906 -18.47195 -17.55898 -17.32954 -16.43950 -16.35700 -16.24964 -15.66172 -15.44668 -15.10927 -15.03464 -14.81142 -14.40831 -14.08429 -13.98441 -13.65031 -13.25956 -13.02336 -12.79205 -12.67456 -12.59301 -12.52707 -12.03624 -11.96000 -11.73069 -11.68662 -11.40697 -10.79430 -10.75250 -10.04608 -9.56180 -9.44176 -8.87085 -8.52823 -6.55470 -0.47967 0.45811 0.84889 1.38815 1.48821 1.52145 1.55658 1.78478 1.93440 2.16068 2.38433 2.54948 2.86968 3.12577 3.36626 3.62743 3.69326 3.95849 4.07861 4.28302 4.30588 4.36839 4.47334 4.56347 4.62552 4.65428 4.69961 4.77191 4.83171 4.92710 5.06364 5.19533 5.34882 5.39125 5.55382 5.62442 5.69633 5.73030 5.89996 5.91155 5.98971 6.23124 6.61757 6.67891 7.12214 7.23909 8.03476 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.014228 B = 0.004841 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.524098 B = 5782.714714 C = 7614.032500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.376 5.376 3 N -0.322 5.322 4 C 0.047 3.953 5 C -0.269 4.269 6 C 0.106 3.894 7 C -0.074 4.074 8 C -0.033 4.033 9 C 0.198 3.802 10 N -0.526 5.526 11 C 0.010 3.990 12 C -0.094 4.094 13 C -0.124 4.124 14 C -0.134 4.134 15 C -0.097 4.097 16 C -0.023 4.023 17 N -0.296 5.296 18 C -0.449 4.449 19 H 0.114 0.886 20 C -0.006 4.006 21 N -0.834 5.834 22 Si 1.127 2.873 23 H -0.274 1.274 24 H -0.266 1.266 25 H -0.252 1.252 26 H 0.086 0.914 27 H 0.102 0.898 28 H 0.098 0.902 29 H 0.217 0.783 30 H 0.159 0.841 31 H 0.134 0.866 32 H 0.139 0.861 33 H 0.137 0.863 34 H 0.162 0.838 35 H 0.147 0.853 36 H 0.107 0.893 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.782 6.161 -3.078 7.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.160 5.160 3 N -0.144 5.144 4 C -0.136 4.136 5 C -0.298 4.298 6 C -0.021 4.021 7 C -0.098 4.098 8 C -0.055 4.055 9 C -0.056 4.056 10 N -0.250 5.250 11 C -0.116 4.116 12 C -0.114 4.114 13 C -0.144 4.144 14 C -0.155 4.155 15 C -0.117 4.117 16 C -0.139 4.139 17 N 0.034 4.966 18 C -0.578 4.578 19 H 0.132 0.868 20 C -0.217 4.217 21 N -0.459 5.459 22 Si 0.943 3.057 23 H -0.199 1.199 24 H -0.191 1.191 25 H -0.176 1.176 26 H 0.105 0.895 27 H 0.121 0.879 28 H 0.116 0.884 29 H 0.233 0.767 30 H 0.177 0.823 31 H 0.152 0.848 32 H 0.157 0.843 33 H 0.155 0.845 34 H 0.179 0.821 35 H 0.165 0.835 36 H 0.125 0.875 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.024 6.737 -2.742 7.877 hybrid contribution -0.078 -0.161 0.048 0.185 sum -3.102 6.576 -2.694 7.754 Atomic orbital electron populations 1.22160 0.72453 1.05621 1.04648 1.49155 1.07547 1.02557 1.56763 1.77183 1.02777 1.08537 1.25931 1.24165 0.95500 0.95108 0.98864 1.22147 0.96056 0.95685 1.15933 1.20125 0.91466 0.87889 1.02601 1.20942 0.99701 0.87298 1.01812 1.20805 0.99870 0.85683 0.99187 1.21962 0.85131 0.90452 1.08065 1.70476 1.18255 1.09997 1.26275 1.19472 0.92988 0.90961 1.08188 1.20428 0.96955 0.91776 1.02270 1.21103 0.96839 0.94622 1.01870 1.21122 0.92167 0.99375 1.02792 1.20377 1.00131 0.89575 1.01657 1.19388 0.92074 0.90459 1.11932 1.41635 1.06411 1.04150 1.44371 1.21008 0.79054 1.14108 1.43582 0.86817 1.28336 1.10767 0.91535 0.91055 1.70740 1.15431 1.38350 1.21421 0.82813 0.67420 0.78239 0.77221 1.19876 1.19093 1.17573 0.89549 0.87896 0.88372 0.76670 0.82339 0.84828 0.84311 0.84530 0.82085 0.83497 0.87488 0.92126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.83 11.35 127.77 1.45 3.28 16 2 N -0.38 -10.73 4.07 -356.60 -1.45 -12.18 16 3 N -0.32 -9.36 12.54 -57.37 -0.72 -10.08 16 4 C 0.05 1.19 11.96 85.06 1.02 2.21 16 5 C -0.27 -7.70 10.20 22.55 0.23 -7.47 16 6 C 0.11 3.30 6.91 40.56 0.28 3.58 16 7 C -0.07 -2.52 9.37 23.72 0.22 -2.30 16 8 C -0.03 -1.32 9.27 23.65 0.22 -1.10 16 9 C 0.20 9.62 7.59 135.59 1.03 10.65 16 10 N -0.53 -25.71 10.75 -181.91 -1.96 -27.66 16 11 C 0.01 0.51 7.21 39.61 0.29 0.79 16 12 C -0.09 -3.72 10.11 22.54 0.23 -3.50 16 13 C -0.12 -4.21 10.01 22.26 0.22 -3.99 16 14 C -0.13 -5.05 10.03 22.33 0.22 -4.83 16 15 C -0.10 -4.56 8.36 22.32 0.19 -4.37 16 16 C -0.02 -1.19 5.59 38.85 0.22 -0.98 16 17 N -0.30 -15.49 2.71 -335.77 -0.91 -16.40 16 18 C -0.45 -22.77 9.41 84.08 0.79 -21.98 16 19 H 0.11 5.39 7.78 -2.91 -0.02 5.37 16 20 C -0.01 -0.31 4.35 84.96 0.37 0.06 16 21 N -0.83 -44.18 11.47 21.67 0.25 -43.93 16 22 Si 1.13 41.22 29.99 68.60 2.06 43.28 16 23 H -0.27 -10.07 7.11 99.48 0.71 -9.36 16 24 H -0.27 -9.27 7.11 99.48 0.71 -8.56 16 25 H -0.25 -8.24 7.11 99.48 0.71 -7.53 16 26 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.10 1.80 7.24 -2.39 -0.02 1.79 16 29 H 0.22 3.66 8.06 -2.91 -0.02 3.63 16 30 H 0.16 4.14 7.33 -2.91 -0.02 4.12 16 31 H 0.13 4.54 7.00 -2.91 -0.02 4.52 16 32 H 0.14 5.20 6.66 -2.91 -0.02 5.18 16 33 H 0.14 4.59 8.06 -2.91 -0.02 4.57 16 34 H 0.16 3.92 8.06 -2.91 -0.02 3.89 16 35 H 0.15 4.44 8.06 -2.92 -0.02 4.42 16 36 H 0.11 5.31 6.21 -2.91 -0.02 5.30 16 37 H 0.27 15.39 6.89 -92.71 -0.64 14.75 16 Total: -1.00 -67.17 322.17 5.47 -61.70 By element: Atomic # 1 Polarization: 34.00 SS G_CDS: 1.23 Total: 35.23 kcal Atomic # 6 Polarization: -36.93 SS G_CDS: 6.97 Total: -29.96 kcal Atomic # 7 Polarization: -105.47 SS G_CDS: -4.79 Total: -110.25 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 2.06 Total: 43.28 kcal Total: -67.17 5.47 -61.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352008464.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 203.013 kcal (2) G-P(sol) polarization free energy of solvation -67.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 141.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds