Wall clock time and date at job start Tue Mar 31 2020 07:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34630 * 125.77926 * 2 1 4 4 C 1.38123 * 107.36185 * 180.15834 * 3 2 1 5 5 C 1.47198 * 126.40704 * 179.83764 * 4 3 2 6 6 C 1.34859 * 119.99763 * 179.72085 * 5 4 3 7 7 C 1.46340 * 120.00227 * 180.02562 * 6 5 4 8 8 N 1.31602 * 125.21699 * 354.84985 * 7 6 5 9 9 C 1.35516 * 109.67726 * 180.02562 * 8 7 6 10 10 C 1.39877 * 133.21333 * 180.02562 * 9 8 7 11 11 C 1.37675 * 119.78789 * 179.97438 * 10 9 8 12 12 C 1.38754 * 120.52774 * 359.97438 * 11 10 9 13 13 C 1.37977 * 120.46367 * 0.02562 * 12 11 10 14 14 C 1.38718 * 119.87075 * 359.74282 * 13 12 11 15 15 N 1.37695 * 125.22270 * 174.85130 * 7 6 5 16 16 C 1.37043 * 126.45178 * 359.96277 * 15 7 6 17 17 H 1.08006 * 119.99886 * 328.01600 * 16 15 7 18 18 C 1.38983 * 120.00215 * 148.01520 * 16 15 7 19 19 N 1.31353 * 119.99838 * 335.35925 * 18 16 15 20 20 Si 1.86799 * 120.00156 * 155.36495 * 18 16 15 21 21 H 1.48500 * 109.46874 * 269.99569 * 20 18 16 22 22 H 1.48496 * 109.47230 * 29.99715 * 20 18 16 23 23 H 1.48499 * 109.47198 * 150.00064 * 20 18 16 24 24 C 1.41334 * 107.18110 * 359.58018 * 4 3 2 25 25 N 1.30504 * 108.07910 * 0.25790 * 24 4 3 26 26 H 1.09004 * 109.46903 * 270.28519 * 1 2 3 27 27 H 1.08998 * 109.47257 * 30.28636 * 1 2 3 28 28 H 1.08997 * 109.47035 * 150.28834 * 1 2 3 29 29 H 1.08000 * 126.31889 * 0.02562 * 3 2 1 30 30 H 1.07992 * 120.00191 * 359.71576 * 5 4 3 31 31 H 1.08001 * 119.99878 * 359.97438 * 6 5 4 32 32 H 1.08001 * 120.10833 * 0.02562 * 10 9 8 33 33 H 1.07995 * 119.73935 * 180.02562 * 11 10 9 34 34 H 1.08000 * 119.76527 * 179.97438 * 12 11 10 35 35 H 1.08006 * 120.06802 * 179.97438 * 13 12 11 36 36 H 0.97004 * 120.00169 * 354.12894 * 19 18 16 37 37 H 1.07996 * 125.95744 * 180.29401 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2521 1.0922 0.0000 4 6 3.5626 0.6558 -0.0036 5 6 4.7657 1.5038 -0.0083 6 6 5.9897 0.9376 -0.0059 7 6 7.1859 1.7806 -0.0100 8 7 7.1895 3.0926 -0.1126 9 6 8.4650 3.5492 -0.0829 10 6 9.0263 4.8284 -0.1538 11 6 10.3934 4.9797 -0.0951 12 6 11.2201 3.8729 0.0346 13 6 10.6837 2.6037 0.1060 14 6 9.3083 2.4310 0.0534 15 7 8.4805 1.3227 0.0929 16 6 8.8746 0.0160 0.2164 17 1 8.2457 -0.6908 0.7374 18 6 10.0835 -0.3998 -0.3288 19 7 10.6111 0.2590 -1.3353 20 14 10.9580 -1.8953 0.3697 21 1 11.8784 -1.4689 1.4542 22 1 9.9553 -2.8447 0.9161 23 1 11.7355 -2.5613 -0.7060 24 6 3.5321 -0.7571 0.0040 25 7 2.2831 -1.1353 0.0062 26 1 -0.3633 0.0051 1.0277 27 1 -0.3634 0.8874 -0.5183 28 1 -0.3633 -0.8925 -0.5093 29 1 1.9201 2.1199 0.0004 30 1 4.6684 2.5793 -0.0138 31 1 6.0871 -0.1380 0.0000 32 1 8.3892 5.6948 -0.2535 33 1 10.8259 5.9678 -0.1495 34 1 12.2910 4.0058 0.0790 35 1 11.3332 1.7466 0.2065 36 1 10.1181 0.9823 -1.7534 37 1 4.3924 -1.4100 0.0081 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352019389.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:19 Heat of formation + Delta-G solvation = 157.091422 kcal Electronic energy + Delta-G solvation = -21906.034168 eV Core-core repulsion = 18650.721389 eV Total energy + Delta-G solvation = -3255.312779 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 294.118 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.98654 -40.79224 -36.33767 -34.67683 -34.09321 -32.46059 -31.05231 -29.83905 -29.25200 -27.82728 -26.25276 -24.94844 -23.15837 -21.30077 -21.20909 -20.65288 -20.15674 -18.79402 -17.76571 -16.83517 -16.06208 -15.60206 -15.48055 -14.83034 -14.47902 -14.33241 -14.05048 -13.66069 -13.30204 -13.18879 -12.97896 -12.90635 -12.80089 -12.26054 -11.97108 -11.46920 -11.28447 -11.04860 -10.96648 -10.77537 -10.48759 -10.44631 -10.24021 -9.97990 -9.61584 -9.43710 -8.94029 -8.81107 -7.98624 -7.54948 -6.99152 -6.67799 -4.56147 1.34364 1.96905 2.42691 2.48306 2.60477 3.10153 3.11600 3.29071 3.43919 3.83881 4.20012 4.32277 4.48267 4.76587 4.84006 4.93022 4.93423 5.07847 5.17857 5.21553 5.55956 5.60962 5.75210 5.85560 5.91217 5.96413 6.15079 6.48407 6.52521 6.59984 6.72605 6.82740 6.91466 6.98925 7.14561 7.17700 7.33714 7.46571 7.59564 7.72972 7.74909 7.84468 8.00175 8.53867 9.05179 9.18056 10.04499 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.015098 B = 0.004334 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.063285 B = 6459.337463 C = 8183.665872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.376 5.376 3 C 0.057 3.943 4 C -0.192 4.192 5 C -0.063 4.063 6 C -0.062 4.062 7 C 0.224 3.776 8 N -0.518 5.518 9 C 0.040 3.960 10 C -0.088 4.088 11 C -0.141 4.141 12 C -0.150 4.150 13 C -0.066 4.066 14 C 0.003 3.997 15 N -0.280 5.280 16 C -0.426 4.426 17 H 0.107 0.893 18 C 0.024 3.976 19 N -0.818 5.818 20 Si 1.082 2.918 21 H -0.275 1.275 22 H -0.276 1.276 23 H -0.275 1.275 24 C 0.063 3.937 25 N -0.305 5.305 26 H 0.073 0.927 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.178 0.822 30 H 0.128 0.872 31 H 0.123 0.877 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.124 0.876 36 H 0.291 0.709 37 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.209 0.615 2.311 11.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.157 5.157 3 C -0.090 4.090 4 C -0.204 4.204 5 C -0.086 4.086 6 C -0.083 4.083 7 C -0.030 4.030 8 N -0.241 5.241 9 C -0.087 4.087 10 C -0.108 4.108 11 C -0.162 4.162 12 C -0.171 4.171 13 C -0.086 4.086 14 C -0.113 4.113 15 N 0.051 4.949 16 C -0.554 4.554 17 H 0.125 0.875 18 C -0.192 4.192 19 N -0.444 5.444 20 Si 0.905 3.095 21 H -0.201 1.201 22 H -0.201 1.201 23 H -0.200 1.200 24 C -0.124 4.124 25 N -0.126 5.126 26 H 0.091 0.909 27 H 0.105 0.895 28 H 0.106 0.894 29 H 0.195 0.805 30 H 0.145 0.855 31 H 0.140 0.860 32 H 0.129 0.871 33 H 0.129 0.871 34 H 0.129 0.871 35 H 0.142 0.858 36 H 0.103 0.897 37 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -11.495 -0.996 2.078 11.724 hybrid contribution -0.121 1.113 0.080 1.122 sum -11.616 0.117 2.157 11.815 Atomic orbital electron populations 1.21826 0.74424 1.04383 1.03234 1.48265 1.06589 1.03977 1.56913 1.22979 0.90643 0.93171 1.02179 1.19478 0.92691 0.92855 1.15347 1.21080 0.88947 0.98303 1.00317 1.20589 0.88355 0.97273 1.02053 1.21459 0.85186 0.89619 1.06711 1.70529 1.20472 1.07158 1.25982 1.18867 0.89369 0.93335 1.07124 1.19961 0.94077 0.93713 1.03021 1.20561 0.92919 0.97778 1.04896 1.20601 0.98525 0.91986 1.06029 1.20277 0.91654 0.97387 0.99290 1.18917 0.93310 0.87274 1.11761 1.41482 1.04195 1.05305 1.43929 1.20696 1.09933 0.84084 1.40729 0.87506 1.26856 0.94611 1.04007 0.93732 1.70590 1.40376 1.19122 1.14292 0.83320 0.76253 0.73527 0.76425 1.20071 1.20109 1.20023 1.24149 0.94801 0.94839 0.98585 1.77084 1.02195 1.08058 1.25271 0.90875 0.89536 0.89398 0.80482 0.85456 0.85955 0.87132 0.87129 0.87060 0.85843 0.89709 0.79649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.73 11.45 59.84 0.69 1.41 16 2 N -0.38 -4.60 3.99 -67.48 -0.27 -4.87 16 3 C 0.06 0.71 11.52 -16.37 -0.19 0.52 16 4 C -0.19 -2.94 6.08 -105.12 -0.64 -3.57 16 5 C -0.06 -1.11 9.76 -37.14 -0.36 -1.47 16 6 C -0.06 -1.26 9.29 -37.52 -0.35 -1.61 16 7 C 0.22 5.50 7.59 -154.04 -1.17 4.33 16 8 N -0.52 -12.91 10.75 -8.85 -0.10 -13.01 16 9 C 0.04 1.01 7.21 -84.69 -0.61 0.39 16 10 C -0.09 -1.88 10.10 -39.17 -0.40 -2.27 16 11 C -0.14 -2.72 10.01 -39.60 -0.40 -3.12 16 12 C -0.15 -3.10 10.03 -39.49 -0.40 -3.49 16 13 C -0.07 -1.58 8.36 -39.50 -0.33 -1.91 16 14 C 0.00 0.09 5.59 -83.79 -0.47 -0.38 16 15 N -0.28 -7.34 2.71 -57.46 -0.16 -7.50 16 16 C -0.43 -10.83 9.42 -14.95 -0.14 -10.97 16 17 H 0.11 2.57 7.78 -52.48 -0.41 2.16 16 18 C 0.02 0.59 4.35 -17.48 -0.08 0.52 16 19 N -0.82 -21.61 11.47 55.50 0.64 -20.98 16 20 Si 1.08 21.21 29.99 -169.99 -5.10 16.12 16 21 H -0.28 -5.27 7.11 56.52 0.40 -4.86 16 22 H -0.28 -5.06 7.11 56.52 0.40 -4.65 16 23 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 24 C 0.06 0.95 11.39 -16.94 -0.19 0.75 16 25 N -0.31 -4.57 12.50 30.88 0.39 -4.19 16 26 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.18 1.57 8.06 -52.49 -0.42 1.15 16 30 H 0.13 2.26 7.68 -52.49 -0.40 1.85 16 31 H 0.12 2.32 6.62 -52.49 -0.35 1.98 16 32 H 0.11 2.08 8.06 -52.49 -0.42 1.66 16 33 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 34 H 0.11 1.95 8.06 -52.49 -0.42 1.53 16 35 H 0.12 3.07 6.21 -52.48 -0.33 2.75 16 36 H 0.29 8.19 6.88 -40.82 -0.28 7.91 16 37 H 0.19 2.51 7.31 -52.49 -0.38 2.13 16 LS Contribution 324.00 15.07 4.88 4.88 Total: -1.00 -31.72 324.00 -8.65 -40.37 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -3.90 Total: 10.04 kcal Atomic # 6 Polarization: -15.84 SS G_CDS: -5.03 Total: -20.87 kcal Atomic # 7 Polarization: -51.04 SS G_CDS: 0.50 Total: -50.54 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.10 Total: 16.12 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.72 -8.65 -40.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352019389.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 197.457 kcal (2) G-P(sol) polarization free energy of solvation -31.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 165.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 157.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds