Wall clock time and date at job start Tue Mar 31 2020 07:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34630 * 125.77926 * 2 1 4 4 C 1.38123 * 107.36185 * 180.15834 * 3 2 1 5 5 C 1.47198 * 126.40704 * 179.83764 * 4 3 2 6 6 C 1.34859 * 119.99763 * 179.72085 * 5 4 3 7 7 C 1.46340 * 120.00227 * 180.02562 * 6 5 4 8 8 N 1.31602 * 125.21699 * 354.84985 * 7 6 5 9 9 C 1.35516 * 109.67726 * 180.02562 * 8 7 6 10 10 C 1.39877 * 133.21333 * 180.02562 * 9 8 7 11 11 C 1.37675 * 119.78789 * 179.97438 * 10 9 8 12 12 C 1.38754 * 120.52774 * 359.97438 * 11 10 9 13 13 C 1.37977 * 120.46367 * 0.02562 * 12 11 10 14 14 C 1.38718 * 119.87075 * 359.74282 * 13 12 11 15 15 N 1.37695 * 125.22270 * 174.85130 * 7 6 5 16 16 C 1.37043 * 126.45178 * 359.96277 * 15 7 6 17 17 H 1.08006 * 119.99886 * 328.01600 * 16 15 7 18 18 C 1.38983 * 120.00215 * 148.01520 * 16 15 7 19 19 N 1.31353 * 119.99838 * 335.35925 * 18 16 15 20 20 Si 1.86799 * 120.00156 * 155.36495 * 18 16 15 21 21 H 1.48500 * 109.46874 * 269.99569 * 20 18 16 22 22 H 1.48496 * 109.47230 * 29.99715 * 20 18 16 23 23 H 1.48499 * 109.47198 * 150.00064 * 20 18 16 24 24 C 1.41334 * 107.18110 * 359.58018 * 4 3 2 25 25 N 1.30504 * 108.07910 * 0.25790 * 24 4 3 26 26 H 1.09004 * 109.46903 * 270.28519 * 1 2 3 27 27 H 1.08998 * 109.47257 * 30.28636 * 1 2 3 28 28 H 1.08997 * 109.47035 * 150.28834 * 1 2 3 29 29 H 1.08000 * 126.31889 * 0.02562 * 3 2 1 30 30 H 1.07992 * 120.00191 * 359.71576 * 5 4 3 31 31 H 1.08001 * 119.99878 * 359.97438 * 6 5 4 32 32 H 1.08001 * 120.10833 * 0.02562 * 10 9 8 33 33 H 1.07995 * 119.73935 * 180.02562 * 11 10 9 34 34 H 1.08000 * 119.76527 * 179.97438 * 12 11 10 35 35 H 1.08006 * 120.06802 * 179.97438 * 13 12 11 36 36 H 0.97004 * 120.00169 * 354.12894 * 19 18 16 37 37 H 1.07996 * 125.95744 * 180.29401 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2521 1.0922 0.0000 4 6 3.5626 0.6558 -0.0036 5 6 4.7657 1.5038 -0.0083 6 6 5.9897 0.9376 -0.0059 7 6 7.1859 1.7806 -0.0100 8 7 7.1895 3.0926 -0.1126 9 6 8.4650 3.5492 -0.0829 10 6 9.0263 4.8284 -0.1538 11 6 10.3934 4.9797 -0.0951 12 6 11.2201 3.8729 0.0346 13 6 10.6837 2.6037 0.1060 14 6 9.3083 2.4310 0.0534 15 7 8.4805 1.3227 0.0929 16 6 8.8746 0.0160 0.2164 17 1 8.2457 -0.6908 0.7374 18 6 10.0835 -0.3998 -0.3288 19 7 10.6111 0.2590 -1.3353 20 14 10.9580 -1.8953 0.3697 21 1 11.8784 -1.4689 1.4542 22 1 9.9553 -2.8447 0.9161 23 1 11.7355 -2.5613 -0.7060 24 6 3.5321 -0.7571 0.0040 25 7 2.2831 -1.1353 0.0062 26 1 -0.3633 0.0051 1.0277 27 1 -0.3634 0.8874 -0.5183 28 1 -0.3633 -0.8925 -0.5093 29 1 1.9201 2.1199 0.0004 30 1 4.6684 2.5793 -0.0138 31 1 6.0871 -0.1380 0.0000 32 1 8.3892 5.6948 -0.2535 33 1 10.8259 5.9678 -0.1495 34 1 12.2910 4.0058 0.0790 35 1 11.3332 1.7466 0.2065 36 1 10.1181 0.9823 -1.7534 37 1 4.3924 -1.4100 0.0081 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352019389.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:18 Heat of formation + Delta-G solvation = 139.523057 kcal Electronic energy + Delta-G solvation = -21906.795989 eV Core-core repulsion = 18650.721389 eV Total energy + Delta-G solvation = -3256.074600 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 294.118 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.61066 -42.03100 -38.02215 -36.42540 -35.40784 -33.58948 -32.88587 -31.17076 -30.90451 -29.24230 -27.33576 -26.79515 -24.60152 -22.95654 -22.69819 -22.02672 -21.55030 -20.34051 -19.40671 -18.22363 -17.45323 -17.37656 -16.38935 -16.36487 -16.28440 -15.65865 -15.36161 -15.07681 -14.99871 -14.75060 -14.36891 -14.08255 -13.67508 -13.65500 -13.13246 -13.01454 -12.85138 -12.61913 -12.60395 -12.48423 -12.02869 -11.91957 -11.60933 -11.56527 -11.20994 -10.76903 -10.67101 -10.45626 -9.50397 -9.32701 -8.81781 -8.27266 -6.50457 -0.14993 0.65854 0.88618 1.07409 1.48390 1.53757 1.61939 1.76362 2.02590 2.19910 2.51703 2.65387 2.94972 3.17360 3.50552 3.59940 3.93005 4.07555 4.22973 4.29800 4.32381 4.39488 4.45237 4.53870 4.68079 4.70007 4.72776 4.73845 4.82168 4.98130 5.14356 5.24073 5.51865 5.58763 5.63475 5.65833 5.71756 5.76718 5.97600 5.99294 6.07037 6.29494 6.63935 6.69151 7.22083 7.33728 8.08687 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.015098 B = 0.004334 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.063285 B = 6459.337463 C = 8183.665872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.370 5.370 3 C 0.092 3.908 4 C -0.238 4.238 5 C -0.007 4.007 6 C -0.116 4.116 7 C 0.222 3.778 8 N -0.535 5.535 9 C 0.010 3.990 10 C -0.096 4.096 11 C -0.126 4.126 12 C -0.137 4.137 13 C -0.099 4.099 14 C -0.024 4.024 15 N -0.309 5.309 16 C -0.450 4.450 17 H 0.107 0.893 18 C -0.009 4.009 19 N -0.841 5.841 20 Si 1.131 2.869 21 H -0.267 1.267 22 H -0.256 1.256 23 H -0.274 1.274 24 C 0.056 3.944 25 N -0.332 5.332 26 H 0.090 0.910 27 H 0.121 0.879 28 H 0.092 0.908 29 H 0.221 0.779 30 H 0.128 0.872 31 H 0.123 0.877 32 H 0.137 0.863 33 H 0.161 0.839 34 H 0.146 0.854 35 H 0.105 0.895 36 H 0.267 0.733 37 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.026 2.063 2.815 13.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.149 5.149 3 C -0.058 4.058 4 C -0.250 4.250 5 C -0.030 4.030 6 C -0.137 4.137 7 C -0.033 4.033 8 N -0.259 5.259 9 C -0.116 4.116 10 C -0.115 4.115 11 C -0.147 4.147 12 C -0.157 4.157 13 C -0.120 4.120 14 C -0.139 4.139 15 N 0.020 4.980 16 C -0.578 4.578 17 H 0.125 0.875 18 C -0.219 4.219 19 N -0.468 5.468 20 Si 0.947 3.053 21 H -0.192 1.192 22 H -0.179 1.179 23 H -0.199 1.199 24 C -0.130 4.130 25 N -0.153 5.153 26 H 0.109 0.891 27 H 0.139 0.861 28 H 0.110 0.890 29 H 0.238 0.762 30 H 0.146 0.854 31 H 0.141 0.859 32 H 0.155 0.845 33 H 0.179 0.821 34 H 0.164 0.836 35 H 0.123 0.877 36 H 0.077 0.923 37 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -13.342 0.450 2.588 13.598 hybrid contribution 0.076 0.834 -0.068 0.840 sum -13.265 1.284 2.520 13.563 Atomic orbital electron populations 1.22319 0.71209 1.06375 1.05047 1.48773 1.08379 1.03183 1.54580 1.23602 0.89450 0.94891 0.97808 1.19448 0.93144 0.92808 1.19591 1.21178 0.88908 0.98434 0.94529 1.20554 0.88133 0.97085 1.07884 1.22252 0.86008 0.90144 1.04888 1.70505 1.20704 1.07394 1.27279 1.19496 0.89396 0.94654 1.08056 1.20412 0.95503 0.93102 1.02525 1.21079 0.91925 0.99533 1.02159 1.21090 1.00564 0.90920 1.03135 1.20363 0.90977 0.98494 1.02128 1.19412 0.94338 0.87809 1.12335 1.41682 1.04810 1.05599 1.45889 1.20914 1.10788 0.84523 1.41554 0.87507 1.28300 0.94994 1.05699 0.92882 1.70713 1.40465 1.19595 1.15979 0.82763 0.75789 0.70774 0.75972 1.19246 1.17943 1.19853 1.24268 0.95232 0.95140 0.98340 1.77059 1.02289 1.09648 1.26302 0.89110 0.86118 0.88953 0.76225 0.85418 0.85883 0.84534 0.82102 0.83626 0.87718 0.92272 0.79644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.90 11.45 127.77 1.46 2.36 16 2 N -0.37 -7.87 3.99 -367.42 -1.47 -9.33 16 3 C 0.09 1.97 11.52 84.24 0.97 2.94 16 4 C -0.24 -7.00 6.08 -20.19 -0.12 -7.12 16 5 C -0.01 -0.25 9.76 23.85 0.23 -0.01 16 6 C -0.12 -4.94 9.29 23.60 0.22 -4.72 16 7 C 0.22 11.50 7.59 135.63 1.03 12.53 16 8 N -0.54 -27.56 10.75 -181.90 -1.96 -29.51 16 9 C 0.01 0.49 7.21 39.58 0.29 0.77 16 10 C -0.10 -3.97 10.10 22.53 0.23 -3.75 16 11 C -0.13 -4.56 10.01 22.26 0.22 -4.34 16 12 C -0.14 -5.46 10.03 22.33 0.22 -5.24 16 13 C -0.10 -4.92 8.36 22.32 0.19 -4.74 16 14 C -0.02 -1.31 5.59 38.83 0.22 -1.09 16 15 N -0.31 -17.20 2.71 -335.71 -0.91 -18.12 16 16 C -0.45 -24.35 9.42 84.06 0.79 -23.56 16 17 H 0.11 5.51 7.78 -2.91 -0.02 5.48 16 18 C -0.01 -0.48 4.35 84.94 0.37 -0.11 16 19 N -0.84 -46.97 11.47 21.67 0.25 -46.72 16 20 Si 1.13 44.11 29.99 68.60 2.06 46.16 16 21 H -0.27 -10.00 7.11 99.48 0.71 -9.29 16 22 H -0.26 -9.01 7.11 99.48 0.71 -8.30 16 23 H -0.27 -10.49 7.11 99.48 0.71 -9.79 16 24 C 0.06 1.68 11.39 85.65 0.98 2.66 16 25 N -0.33 -9.51 12.50 -56.22 -0.70 -10.21 16 26 H 0.09 0.67 8.14 -2.38 -0.02 0.65 16 27 H 0.12 0.45 8.14 -2.39 -0.02 0.43 16 28 H 0.09 0.90 8.14 -2.39 -0.02 0.89 16 29 H 0.22 2.70 8.06 -2.91 -0.02 2.67 16 30 H 0.13 4.44 7.68 -2.91 -0.02 4.42 16 31 H 0.12 5.06 6.62 -2.91 -0.02 5.04 16 32 H 0.14 4.84 8.06 -2.91 -0.02 4.82 16 33 H 0.16 4.19 8.06 -2.91 -0.02 4.17 16 34 H 0.15 4.72 8.06 -2.91 -0.02 4.69 16 35 H 0.10 5.50 6.21 -2.91 -0.02 5.49 16 36 H 0.27 16.11 6.88 -92.71 -0.64 15.47 16 37 H 0.19 5.30 7.31 -2.91 -0.02 5.28 16 Total: -1.00 -74.81 324.00 5.79 -69.02 By element: Atomic # 1 Polarization: 30.91 SS G_CDS: 1.23 Total: 32.14 kcal Atomic # 6 Polarization: -40.71 SS G_CDS: 7.29 Total: -33.42 kcal Atomic # 7 Polarization: -109.11 SS G_CDS: -4.79 Total: -113.90 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.06 Total: 46.16 kcal Total: -74.81 5.79 -69.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352019389.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 208.541 kcal (2) G-P(sol) polarization free energy of solvation -74.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds