Wall clock time and date at job start Tue Mar 31 2020 06:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47111 * 2 1 4 4 N 1.46498 * 109.46972 * 179.97438 * 3 2 1 5 5 C 1.36933 * 120.00082 * 275.72652 * 4 3 2 6 6 H 1.07996 * 120.00156 * 39.69241 * 5 4 3 7 7 C 1.38819 * 120.00009 * 219.69453 * 5 4 3 8 8 N 1.31621 * 119.99632 * 17.94669 * 7 5 4 9 9 Si 1.86803 * 120.00018 * 197.94799 * 7 5 4 10 10 H 1.48494 * 109.47088 * 60.00015 * 9 7 5 11 11 H 1.48500 * 109.46830 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.46839 * 300.00206 * 9 7 5 13 13 C 1.46510 * 120.00065 * 95.72409 * 4 3 2 14 14 C 1.50697 * 109.47038 * 270.00291 * 13 4 3 15 15 C 1.34478 * 126.42150 * 270.03800 * 14 13 4 16 16 C 1.50699 * 125.82518 * 0.02562 * 15 14 13 17 17 N 1.33832 * 108.34921 * 179.97438 * 15 14 13 18 18 C 1.32315 * 109.09342 * 359.97438 * 17 15 14 19 19 S 1.76244 * 142.33234 * 180.02562 * 18 17 15 20 20 C 1.75762 * 90.64502 * 179.97438 * 19 18 17 21 21 C 1.50709 * 124.86740 * 179.97438 * 20 19 18 22 22 N 1.27485 * 110.27064 * 359.76667 * 20 19 18 23 23 N 1.35160 * 108.85088 * 359.97438 * 18 17 15 24 24 H 1.08997 * 109.47628 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47230 * 300.00132 * 1 2 3 26 26 H 1.09005 * 109.46911 * 60.00119 * 1 2 3 27 27 H 1.08997 * 109.46609 * 239.99555 * 2 1 3 28 28 H 1.08998 * 109.46537 * 120.00048 * 2 1 3 29 29 H 1.08996 * 109.47564 * 59.99734 * 3 2 1 30 30 H 1.09005 * 109.47136 * 299.99743 * 3 2 1 31 31 H 0.97006 * 119.99339 * 179.97438 * 8 7 5 32 32 H 1.08993 * 109.46838 * 149.99882 * 13 4 3 33 33 H 1.08994 * 109.46968 * 29.99974 * 13 4 3 34 34 H 1.08995 * 109.47049 * 269.99384 * 16 15 14 35 35 H 1.08999 * 109.46893 * 30.00017 * 16 15 14 36 36 H 1.09007 * 109.47015 * 149.99715 * 16 15 14 37 37 H 1.09000 * 109.46825 * 0.02562 * 21 20 19 38 38 H 1.08994 * 109.46991 * 120.02419 * 21 20 19 39 39 H 1.09001 * 109.47234 * 240.02881 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1892 1.3243 1.1809 6 1 3.8356 0.6475 1.9446 7 6 5.3373 2.0745 1.3957 8 7 5.5793 3.1342 0.6536 9 14 6.5386 1.5798 2.7380 10 1 7.0494 0.2123 2.4658 11 1 7.6744 2.5361 2.7626 12 1 5.8472 1.5976 4.0521 13 6 4.2381 1.5688 -1.2616 14 6 4.4894 0.1984 -1.8358 15 6 5.5591 -0.5820 -1.6008 16 6 6.7244 -0.2363 -0.7099 17 7 5.4117 -1.7184 -2.2921 18 6 4.2702 -1.6739 -2.9597 19 16 3.2624 -2.6074 -4.0639 20 6 2.0712 -1.3156 -4.1006 21 6 0.7900 -1.3473 -4.8934 22 7 2.4443 -0.3495 -3.3570 23 7 3.6603 -0.4952 -2.7038 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8932 -0.5139 -0.8899 28 1 1.8932 -0.5138 0.8900 29 1 1.6767 1.9564 0.8899 30 1 1.6767 1.9563 -0.8900 31 1 6.3814 3.6586 0.8041 32 1 5.1903 2.0670 -1.0803 33 1 3.6493 2.1557 -1.9665 34 1 7.4909 0.2716 -1.2951 35 1 6.3862 0.4190 0.0927 36 1 7.1388 -1.1496 -0.2830 37 1 0.7210 -2.2909 -5.4347 38 1 -0.0588 -1.2542 -4.2160 39 1 0.7811 -0.5199 -5.6030 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352651021.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:00 Heat of formation + Delta-G solvation = 134.719421 kcal Electronic energy + Delta-G solvation = -22495.609496 eV Core-core repulsion = 19374.770546 eV Total energy + Delta-G solvation = -3120.838950 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.121 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.94013 -37.70141 -36.21223 -33.14948 -32.47124 -31.32246 -30.17338 -29.23171 -26.76411 -25.64217 -24.98841 -23.24710 -22.05414 -20.31738 -19.88283 -19.61144 -18.15101 -16.76648 -15.95072 -15.60217 -14.95147 -14.36705 -14.29445 -14.12248 -13.82311 -13.63356 -13.17603 -12.92617 -12.73585 -12.59094 -12.40171 -11.95982 -11.87997 -11.60457 -11.43148 -11.23311 -10.96950 -10.77811 -10.63146 -10.56239 -10.44231 -10.21544 -10.11875 -10.06311 -9.65380 -9.45885 -8.59352 -8.54289 -7.37417 -6.67206 -5.91497 -3.51112 0.77357 1.11188 1.47339 2.22828 2.45735 3.30282 3.38183 3.39445 3.43096 4.32338 4.40055 4.72765 5.04563 5.14344 5.22041 5.43722 5.48138 5.54415 5.64737 5.72229 5.88721 6.02499 6.11386 6.21746 6.26035 6.40340 6.42181 6.49919 6.59394 6.61158 6.82183 6.87911 6.93930 7.14247 7.24721 7.40391 7.74323 7.78631 8.24080 8.43874 9.06401 9.65993 10.27713 11.10102 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.017897 B = 0.006441 C = 0.005266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.097669 B = 4346.332567 C = 5315.866996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.142 4.142 3 C 0.152 3.848 4 N -0.571 5.571 5 C -0.257 4.257 6 H 0.059 0.941 7 C 0.019 3.981 8 N -0.886 5.886 9 Si 0.888 3.112 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.280 1.280 13 C 0.209 3.791 14 C 0.056 3.944 15 C 0.033 3.967 16 C -0.073 4.073 17 N -0.436 5.436 18 C 0.074 3.926 19 S 0.127 5.873 20 C 0.078 3.922 21 C -0.067 4.067 22 N -0.228 5.228 23 N -0.305 5.305 24 H 0.040 0.960 25 H 0.049 0.951 26 H 0.047 0.953 27 H 0.048 0.952 28 H 0.053 0.947 29 H 0.047 0.953 30 H 0.035 0.965 31 H 0.260 0.740 32 H 0.126 0.874 33 H 0.039 0.961 34 H 0.061 0.939 35 H 0.104 0.896 36 H 0.062 0.938 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.810 -7.411 -10.129 14.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.182 4.182 3 C 0.026 3.974 4 N -0.289 5.289 5 C -0.387 4.387 6 H 0.077 0.923 7 C -0.181 4.181 8 N -0.528 5.528 9 Si 0.716 3.284 10 H -0.200 1.200 11 H -0.212 1.212 12 H -0.206 1.206 13 C 0.080 3.920 14 C -0.061 4.061 15 C -0.099 4.099 16 C -0.131 4.131 17 N -0.161 5.161 18 C -0.292 4.292 19 S 0.361 5.639 20 C -0.221 4.221 21 C -0.128 4.128 22 N -0.040 5.040 23 N -0.084 5.084 24 H 0.059 0.941 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.143 0.857 33 H 0.057 0.943 34 H 0.080 0.920 35 H 0.122 0.878 36 H 0.080 0.920 37 H 0.110 0.890 38 H 0.116 0.884 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.329 -8.043 -10.303 14.986 hybrid contribution 0.322 0.599 1.078 1.275 sum -7.007 -7.444 -9.225 13.770 Atomic orbital electron populations 1.21687 0.97264 1.00148 1.01002 1.22087 0.93840 1.01130 1.01137 1.20908 0.84847 0.92821 0.98868 1.43729 0.99501 1.83922 1.01757 1.18961 1.07452 1.18207 0.94060 0.92313 1.25200 1.00697 0.94450 0.97792 1.69898 1.26976 1.14679 1.41257 0.86652 0.81008 0.78562 0.82169 1.19988 1.21151 1.20561 1.19746 1.01478 0.84961 0.85783 1.23549 0.88466 1.00765 0.93304 1.20492 0.97871 0.89925 1.01592 1.20322 0.92756 1.02012 0.97984 1.70330 1.12717 1.23398 1.09696 1.26067 0.99730 0.92657 1.10778 1.84881 1.12820 1.18196 1.47999 1.28230 1.01976 0.92980 0.98964 1.20475 0.89030 1.04649 0.98635 1.73475 0.98288 1.23827 1.08402 1.47809 1.11499 1.14498 1.34625 0.94099 0.93155 0.93429 0.93317 0.92859 0.93453 0.94685 0.93019 0.85672 0.94306 0.91995 0.87793 0.91950 0.89036 0.88440 0.88473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 9.91 37.16 0.37 -1.88 16 2 C -0.14 -2.82 6.22 -26.73 -0.17 -2.98 16 3 C 0.15 3.30 5.72 -4.04 -0.02 3.28 16 4 N -0.57 -14.04 2.41 -174.61 -0.42 -14.46 16 5 C -0.26 -6.74 8.89 -15.06 -0.13 -6.87 16 6 H 0.06 1.58 7.89 -52.49 -0.41 1.17 16 7 C 0.02 0.49 3.46 -17.43 -0.06 0.43 16 8 N -0.89 -23.76 11.41 55.49 0.63 -23.13 16 9 Si 0.89 20.48 28.40 -169.99 -4.83 15.65 16 10 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 11 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 C 0.21 4.98 5.46 -5.19 -0.03 4.95 16 14 C 0.06 1.28 6.69 -80.84 -0.54 0.74 16 15 C 0.03 0.75 7.06 -83.05 -0.59 0.16 16 16 C -0.07 -1.55 10.03 36.01 0.36 -1.19 16 17 N -0.44 -9.76 11.32 -9.76 -0.11 -9.87 16 18 C 0.07 1.51 9.00 -88.73 -0.80 0.71 16 19 S 0.13 1.80 23.35 -107.50 -2.51 -0.71 16 20 C 0.08 1.03 7.58 -14.08 -0.11 0.92 16 21 C -0.07 -0.49 10.49 36.01 0.38 -0.11 16 22 N -0.23 -4.01 11.22 32.88 0.37 -3.64 16 23 N -0.31 -6.35 3.67 -8.73 -0.03 -6.38 16 24 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.05 1.02 6.40 -51.93 -0.33 0.69 16 28 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.05 1.04 8.08 -51.93 -0.42 0.62 16 30 H 0.03 0.74 7.83 -51.93 -0.41 0.33 16 31 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 32 H 0.13 3.22 5.16 -51.93 -0.27 2.95 16 33 H 0.04 0.91 7.86 -51.93 -0.41 0.51 16 34 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 35 H 0.10 2.41 3.77 -51.93 -0.20 2.22 16 36 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 37 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 332.21 15.07 5.01 5.01 Total: -1.00 -30.50 332.21 -8.61 -39.11 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -5.38 Total: 0.26 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: -1.34 Total: -1.84 kcal Atomic # 7 Polarization: -57.92 SS G_CDS: 0.44 Total: -57.48 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -4.83 Total: 15.65 kcal Atomic # 16 Polarization: 1.80 SS G_CDS: -2.51 Total: -0.71 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.50 -8.61 -39.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352651021.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.832 kcal (2) G-P(sol) polarization free energy of solvation -30.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds