Wall clock time and date at job start Tue Mar 31 2020 07:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46501 * 119.99598 * 2 1 4 4 C 1.50703 * 109.47236 * 269.99521 * 3 2 1 5 5 H 1.07996 * 119.99836 * 0.02562 * 4 3 2 6 6 C 1.37879 * 119.99953 * 179.72355 * 4 3 2 7 7 N 1.31519 * 119.99970 * 0.28436 * 6 4 3 8 8 Si 1.86801 * 119.99931 * 180.27555 * 6 4 3 9 9 H 1.48499 * 109.46999 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.46678 * 120.00429 * 8 6 4 11 11 H 1.48491 * 109.47472 * 240.00457 * 8 6 4 12 12 C 1.34771 * 119.99938 * 179.97438 * 2 1 3 13 13 O 1.21288 * 119.99610 * 175.03061 * 12 2 1 14 14 C 1.50691 * 120.00348 * 355.03190 * 12 2 1 15 15 H 1.08998 * 110.27278 * 32.63472 * 14 12 2 16 16 C 1.54594 * 110.30937 * 270.54882 * 14 12 2 17 17 C 1.55099 * 102.84812 * 219.18264 * 16 14 12 18 18 N 1.48532 * 103.28116 * 37.30687 * 17 16 14 19 19 C 1.46907 * 110.99818 * 200.33364 * 18 17 16 20 20 C 1.52999 * 109.46879 * 307.39478 * 19 18 17 21 21 F 1.39900 * 109.47448 * 60.00275 * 20 19 18 22 22 F 1.39902 * 109.47080 * 180.02562 * 20 19 18 23 23 F 1.39899 * 109.47247 * 299.99809 * 20 19 18 24 24 C 1.47902 * 105.82168 * 320.84427 * 18 17 16 25 25 H 1.09006 * 109.46763 * 95.29480 * 1 2 3 26 26 H 1.08999 * 109.47037 * 215.29674 * 1 2 3 27 27 H 1.09000 * 109.47132 * 335.30142 * 1 2 3 28 28 H 1.09002 * 109.46914 * 149.99997 * 3 2 1 29 29 H 1.08995 * 109.47753 * 29.99890 * 3 2 1 30 30 H 0.96993 * 119.99660 * 179.97438 * 7 6 4 31 31 H 1.09008 * 110.72344 * 337.48413 * 16 14 12 32 32 H 1.09005 * 110.73107 * 100.76483 * 16 14 12 33 33 H 1.08997 * 110.59758 * 278.87103 * 17 16 14 34 34 H 1.09003 * 110.83145 * 155.84646 * 17 16 14 35 35 H 1.08995 * 109.47180 * 67.39550 * 19 18 17 36 36 H 1.08997 * 109.46770 * 187.39545 * 19 18 17 37 37 H 1.09000 * 109.91680 * 265.98317 * 24 18 17 38 38 H 1.08996 * 109.91630 * 144.68405 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0975 1.0962 -2.2417 6 6 3.1214 2.8807 -1.6727 7 7 3.5488 3.6208 -0.6731 8 14 3.4261 3.4238 -3.4339 9 1 2.8494 2.4231 -4.3673 10 1 2.7830 4.7425 -3.6634 11 1 4.8875 3.5377 -3.6710 12 6 2.1389 -1.1672 0.0005 13 8 3.3483 -1.1691 -0.0905 14 6 1.3897 -2.4697 0.1141 15 1 0.4163 -2.3890 -0.3696 16 6 1.2197 -2.8631 1.5995 17 6 1.4346 -4.3990 1.5762 18 7 2.5064 -4.5783 0.5636 19 6 2.5206 -5.9546 0.0502 20 6 2.5840 -6.9356 1.2226 21 9 1.4649 -6.7554 2.0425 22 9 2.5982 -8.2463 0.7336 23 9 3.7475 -6.7023 1.9635 24 6 2.2066 -3.6129 -0.5161 25 1 -0.3633 -0.0948 -1.0234 26 1 -0.3633 -0.8387 0.5938 27 1 -0.3633 0.9336 0.4294 28 1 3.1499 1.1385 0.5138 29 1 1.6084 2.0284 0.5138 30 1 4.0223 4.4485 -0.8503 31 1 1.9760 -2.3773 2.2162 32 1 0.2177 -2.6177 1.9514 33 1 0.5228 -4.9091 1.2658 34 1 1.7625 -4.7593 2.5513 35 1 1.6142 -6.1364 -0.5271 36 1 3.3926 -6.0950 -0.5887 37 1 1.6229 -4.0994 -1.2976 38 1 3.1348 -3.2207 -0.9317 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000471858614.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:34 Heat of formation + Delta-G solvation = -174.306440 kcal Electronic energy + Delta-G solvation = -24427.567160 eV Core-core repulsion = 20276.425481 eV Total energy + Delta-G solvation = -4151.141679 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.33407 -47.91099 -47.71021 -39.94734 -37.92191 -34.82199 -33.22520 -32.44754 -29.24542 -28.62124 -27.48607 -25.78437 -23.71208 -23.16108 -21.56629 -21.18212 -18.80989 -18.67235 -18.29662 -17.60744 -16.75499 -16.50634 -15.95888 -15.25462 -15.07756 -14.70108 -14.51990 -14.46589 -14.35405 -14.22269 -14.01067 -13.90834 -13.84410 -13.02992 -12.85411 -12.80423 -12.21258 -12.15392 -12.03232 -11.86409 -11.58033 -11.37771 -11.32394 -11.14838 -10.89067 -10.74386 -10.57331 -10.15415 -9.61833 -8.89817 -8.73983 -8.44022 -7.65424 -6.04583 -4.09028 2.47140 3.28676 3.29493 3.36478 3.38222 3.41850 3.54970 3.81087 3.90639 4.17572 4.43978 4.44701 4.70759 4.78610 4.93930 5.03712 5.09000 5.27830 5.33569 5.36757 5.48641 5.57334 5.75097 5.78897 5.91948 6.03688 6.10225 6.16052 6.52804 6.55592 7.03984 7.41909 7.53658 7.91652 8.23001 8.39927 8.90021 9.08341 9.55999 11.03602 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.031857 B = 0.003286 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.714621 B = 8519.879400 C = 8849.462375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.602 5.602 3 C 0.246 3.754 4 C -0.524 4.524 5 H 0.057 0.943 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.282 1.282 12 C 0.512 3.488 13 O -0.530 6.530 14 C -0.123 4.123 15 H 0.094 0.906 16 C -0.107 4.107 17 C 0.023 3.977 18 N -0.505 5.505 19 C 0.001 3.999 20 C 0.456 3.544 21 F -0.183 7.183 22 F -0.185 7.185 23 F -0.171 7.171 24 C 0.053 3.947 25 H 0.048 0.952 26 H 0.053 0.947 27 H 0.070 0.930 28 H 0.042 0.958 29 H 0.032 0.968 30 H 0.263 0.737 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.055 0.945 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.123 0.877 37 H 0.051 0.949 38 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.455 -19.649 3.538 21.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.334 5.334 3 C 0.127 3.873 4 C -0.563 4.563 5 H 0.075 0.925 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.209 1.209 12 C 0.297 3.703 13 O -0.407 6.407 14 C -0.145 4.145 15 H 0.112 0.888 16 C -0.145 4.145 17 C -0.105 4.105 18 N -0.230 5.230 19 C -0.129 4.129 20 C 0.401 3.599 21 F -0.165 7.165 22 F -0.167 7.167 23 F -0.153 7.153 24 C -0.074 4.074 25 H 0.066 0.934 26 H 0.072 0.928 27 H 0.089 0.911 28 H 0.060 0.940 29 H 0.050 0.950 30 H 0.072 0.928 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.073 0.927 34 H 0.110 0.890 35 H 0.098 0.902 36 H 0.141 0.859 37 H 0.070 0.930 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -7.196 -19.376 3.775 21.011 hybrid contribution -0.738 0.088 -1.211 1.421 sum -7.934 -19.288 2.564 21.013 Atomic orbital electron populations 1.21631 0.81571 1.01888 1.00750 1.48134 1.06081 1.07807 1.71426 1.19314 0.92468 0.78017 0.97539 1.21456 1.36466 1.06020 0.92332 0.92465 1.24945 0.95398 0.96420 0.97434 1.69940 1.38595 1.14258 1.30655 0.86440 0.78086 0.78274 0.84595 1.19849 1.20996 1.20850 1.19982 0.87952 0.84658 0.77664 1.90685 1.14022 1.86675 1.49309 1.22201 0.99828 0.94484 0.97973 0.88785 1.22456 1.02707 0.94735 0.94615 1.23742 0.92990 0.96648 0.97073 1.64957 1.45163 1.00894 1.11966 1.23502 1.06295 0.89618 0.93533 1.20467 0.73926 0.80698 0.84797 1.93174 1.53191 1.94867 1.75260 1.93187 1.96289 1.39417 1.87762 1.93229 1.48977 1.94234 1.78835 1.22894 1.01553 0.91064 0.91851 0.93391 0.92804 0.91141 0.93964 0.95026 0.92774 0.89818 0.90109 0.92660 0.88961 0.90152 0.85930 0.93030 0.87359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.30 9.87 59.85 0.59 1.89 16 2 N -0.60 -12.46 2.86 -182.95 -0.52 -12.98 16 3 C 0.25 6.38 5.16 -5.19 -0.03 6.36 16 4 C -0.52 -14.84 9.39 -34.44 -0.32 -15.16 16 5 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 6 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 7 N -0.90 -26.61 13.29 55.43 0.74 -25.88 16 8 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 9 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 12 C 0.51 10.28 6.66 -10.99 -0.07 10.21 16 13 O -0.53 -13.15 15.24 5.55 0.08 -13.07 16 14 C -0.12 -1.71 2.45 -90.42 -0.22 -1.94 16 15 H 0.09 1.10 6.72 -51.93 -0.35 0.75 16 16 C -0.11 -1.29 6.38 -24.78 -0.16 -1.44 16 17 C 0.02 0.25 4.70 -1.81 -0.01 0.24 16 18 N -0.51 -6.13 5.32 -230.35 -1.23 -7.36 16 19 C 0.00 0.00 5.15 -3.82 -0.02 -0.02 16 20 C 0.46 4.51 3.07 37.16 0.11 4.62 16 21 F -0.18 -1.85 13.56 2.25 0.03 -1.82 16 22 F -0.18 -1.79 17.32 2.25 0.04 -1.75 16 23 F -0.17 -2.04 17.24 2.25 0.04 -2.00 16 24 C 0.05 0.70 6.23 -2.75 -0.02 0.69 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.05 0.62 6.23 -51.93 -0.32 0.30 16 27 H 0.07 1.04 7.83 -51.93 -0.41 0.64 16 28 H 0.04 1.24 7.50 -51.93 -0.39 0.85 16 29 H 0.03 0.83 7.86 -51.93 -0.41 0.42 16 30 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 31 H 0.08 1.20 7.86 -51.92 -0.41 0.79 16 32 H 0.08 0.77 7.89 -51.93 -0.41 0.36 16 33 H 0.06 0.51 7.36 -51.93 -0.38 0.13 16 34 H 0.09 1.01 6.96 -51.93 -0.36 0.65 16 35 H 0.08 0.57 7.81 -51.93 -0.41 0.17 16 36 H 0.12 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.05 0.54 7.57 -51.93 -0.39 0.14 16 38 H 0.11 1.76 6.76 -51.93 -0.35 1.41 16 LS Contribution 320.94 15.07 4.84 4.84 Total: -1.00 -33.20 320.94 -6.22 -39.43 By element: Atomic # 1 Polarization: 1.69 SS G_CDS: -4.98 Total: -3.28 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: -0.24 Total: 7.06 kcal Atomic # 7 Polarization: -45.21 SS G_CDS: -1.01 Total: -46.22 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: 0.08 Total: -13.07 kcal Atomic # 9 Polarization: -5.68 SS G_CDS: 0.11 Total: -5.57 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -33.20 -6.22 -39.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000471858614.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.881 kcal (2) G-P(sol) polarization free energy of solvation -33.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds