Wall clock time and date at job start Tue Mar 31 2020 07:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46501 * 119.99598 * 2 1 4 4 C 1.50703 * 109.47236 * 269.99521 * 3 2 1 5 5 H 1.07996 * 119.99836 * 0.02562 * 4 3 2 6 6 C 1.37879 * 119.99953 * 179.72355 * 4 3 2 7 7 N 1.31519 * 119.99970 * 0.28436 * 6 4 3 8 8 Si 1.86801 * 119.99931 * 180.27555 * 6 4 3 9 9 H 1.48499 * 109.46999 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.46678 * 120.00429 * 8 6 4 11 11 H 1.48491 * 109.47472 * 240.00457 * 8 6 4 12 12 C 1.34771 * 119.99938 * 179.97438 * 2 1 3 13 13 O 1.21288 * 119.99610 * 175.03061 * 12 2 1 14 14 C 1.50691 * 120.00348 * 355.03190 * 12 2 1 15 15 H 1.08998 * 110.27278 * 32.63472 * 14 12 2 16 16 C 1.54594 * 110.30937 * 270.54882 * 14 12 2 17 17 C 1.55099 * 102.84812 * 219.18264 * 16 14 12 18 18 N 1.48532 * 103.28116 * 37.30687 * 17 16 14 19 19 C 1.46907 * 110.99818 * 200.33364 * 18 17 16 20 20 C 1.52999 * 109.46879 * 307.39478 * 19 18 17 21 21 F 1.39900 * 109.47448 * 60.00275 * 20 19 18 22 22 F 1.39902 * 109.47080 * 180.02562 * 20 19 18 23 23 F 1.39899 * 109.47247 * 299.99809 * 20 19 18 24 24 C 1.47902 * 105.82168 * 320.84427 * 18 17 16 25 25 H 1.09006 * 109.46763 * 95.29480 * 1 2 3 26 26 H 1.08999 * 109.47037 * 215.29674 * 1 2 3 27 27 H 1.09000 * 109.47132 * 335.30142 * 1 2 3 28 28 H 1.09002 * 109.46914 * 149.99997 * 3 2 1 29 29 H 1.08995 * 109.47753 * 29.99890 * 3 2 1 30 30 H 0.96993 * 119.99660 * 179.97438 * 7 6 4 31 31 H 1.09008 * 110.72344 * 337.48413 * 16 14 12 32 32 H 1.09005 * 110.73107 * 100.76483 * 16 14 12 33 33 H 1.08997 * 110.59758 * 278.87103 * 17 16 14 34 34 H 1.09003 * 110.83145 * 155.84646 * 17 16 14 35 35 H 1.08995 * 109.47180 * 67.39550 * 19 18 17 36 36 H 1.08997 * 109.46770 * 187.39545 * 19 18 17 37 37 H 1.09000 * 109.91680 * 265.98317 * 24 18 17 38 38 H 1.08996 * 109.91630 * 144.68405 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0975 1.0962 -2.2417 6 6 3.1214 2.8807 -1.6727 7 7 3.5488 3.6208 -0.6731 8 14 3.4261 3.4238 -3.4339 9 1 2.8494 2.4231 -4.3673 10 1 2.7830 4.7425 -3.6634 11 1 4.8875 3.5377 -3.6710 12 6 2.1389 -1.1672 0.0005 13 8 3.3483 -1.1691 -0.0905 14 6 1.3897 -2.4697 0.1141 15 1 0.4163 -2.3890 -0.3696 16 6 1.2197 -2.8631 1.5995 17 6 1.4346 -4.3990 1.5762 18 7 2.5064 -4.5783 0.5636 19 6 2.5206 -5.9546 0.0502 20 6 2.5840 -6.9356 1.2226 21 9 1.4649 -6.7554 2.0425 22 9 2.5982 -8.2463 0.7336 23 9 3.7475 -6.7023 1.9635 24 6 2.2066 -3.6129 -0.5161 25 1 -0.3633 -0.0948 -1.0234 26 1 -0.3633 -0.8387 0.5938 27 1 -0.3633 0.9336 0.4294 28 1 3.1499 1.1385 0.5138 29 1 1.6084 2.0284 0.5138 30 1 4.0223 4.4485 -0.8503 31 1 1.9760 -2.3773 2.2162 32 1 0.2177 -2.6177 1.9514 33 1 0.5228 -4.9091 1.2658 34 1 1.7625 -4.7593 2.5513 35 1 1.6142 -6.1364 -0.5271 36 1 3.3926 -6.0950 -0.5887 37 1 1.6229 -4.0994 -1.2976 38 1 3.1348 -3.2207 -0.9317 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000471858614.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:34 Heat of formation + Delta-G solvation = -198.213032 kcal Electronic energy + Delta-G solvation = -24428.603828 eV Core-core repulsion = 20276.425481 eV Total energy + Delta-G solvation = -4152.178347 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -51.11392 -48.66605 -48.53770 -41.24062 -39.16946 -36.56316 -34.82062 -33.92899 -30.44707 -29.81705 -28.88539 -27.28039 -25.32476 -24.20329 -22.57511 -22.39437 -19.78966 -19.57032 -19.42326 -18.73188 -18.48760 -17.99121 -17.19013 -16.66093 -16.23212 -16.13710 -15.56291 -15.50248 -15.39289 -15.21916 -15.00164 -14.75555 -14.71682 -14.40028 -14.30536 -13.85967 -13.77120 -13.52674 -13.34128 -13.01504 -12.91191 -12.76489 -12.62097 -12.50046 -12.30214 -12.24508 -12.17045 -11.79089 -11.65787 -10.64764 -10.50634 -9.57496 -9.39977 -8.22141 -6.36926 1.36260 1.38927 1.50546 1.70057 1.83863 2.31186 2.44314 2.56299 2.81297 3.07228 3.07774 3.34427 3.49794 3.71142 3.78886 4.11393 4.25108 4.26328 4.33237 4.38257 4.45400 4.58656 4.73133 4.86605 4.87801 4.93523 4.99482 5.08137 5.10335 5.22524 5.57287 5.64064 5.74891 5.86172 6.06626 6.70684 6.81776 7.29192 7.51637 8.85010 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.031857 B = 0.003286 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.714621 B = 8519.879400 C = 8849.462375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.611 5.611 3 C 0.259 3.741 4 C -0.540 4.540 5 H 0.053 0.947 6 C 0.005 3.995 7 N -0.930 5.930 8 Si 0.969 3.031 9 H -0.266 1.266 10 H -0.269 1.269 11 H -0.283 1.283 12 C 0.502 3.498 13 O -0.592 6.592 14 C -0.111 4.111 15 H 0.131 0.869 16 C -0.104 4.104 17 C 0.029 3.971 18 N -0.533 5.533 19 C 0.003 3.997 20 C 0.457 3.543 21 F -0.183 7.183 22 F -0.183 7.183 23 F -0.188 7.188 24 C 0.057 3.943 25 H 0.060 0.940 26 H 0.099 0.901 27 H 0.070 0.930 28 H -0.007 1.007 29 H 0.024 0.976 30 H 0.267 0.733 31 H 0.050 0.950 32 H 0.115 0.885 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.112 0.888 36 H 0.129 0.871 37 H 0.088 0.912 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.994 -21.249 2.340 24.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.342 5.342 3 C 0.138 3.862 4 C -0.579 4.579 5 H 0.071 0.929 6 C -0.194 4.194 7 N -0.570 5.570 8 Si 0.793 3.207 9 H -0.190 1.190 10 H -0.194 1.194 11 H -0.209 1.209 12 C 0.291 3.709 13 O -0.473 6.473 14 C -0.132 4.132 15 H 0.149 0.851 16 C -0.142 4.142 17 C -0.097 4.097 18 N -0.258 5.258 19 C -0.126 4.126 20 C 0.403 3.597 21 F -0.164 7.164 22 F -0.165 7.165 23 F -0.169 7.169 24 C -0.070 4.070 25 H 0.078 0.922 26 H 0.118 0.882 27 H 0.089 0.911 28 H 0.011 0.989 29 H 0.042 0.958 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.133 0.867 33 H 0.102 0.898 34 H 0.106 0.894 35 H 0.129 0.871 36 H 0.147 0.853 37 H 0.106 0.894 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.792 -20.999 2.586 23.314 hybrid contribution 0.069 0.554 -0.770 0.951 sum -9.722 -20.446 1.816 22.712 Atomic orbital electron populations 1.21951 0.77826 1.03997 1.02498 1.48170 1.08418 1.06272 1.71302 1.18765 0.90960 0.80528 0.95965 1.21733 1.36758 1.06257 0.93111 0.92876 1.25886 0.94951 0.96496 1.02022 1.70060 1.39171 1.14752 1.33009 0.85350 0.77832 0.78411 0.79100 1.19017 1.19385 1.20858 1.21137 0.87659 0.86346 0.75788 1.90650 1.17063 1.87762 1.51811 1.22232 1.00411 0.90642 0.99945 0.85079 1.22500 1.03597 0.95551 0.92595 1.23742 0.93703 0.95598 0.96697 1.64806 1.46486 1.02300 1.12247 1.23578 1.08197 0.87620 0.93244 1.20583 0.73365 0.80954 0.84812 1.93170 1.53022 1.94868 1.75376 1.93191 1.96248 1.39337 1.87676 1.93200 1.50034 1.94357 1.79351 1.22757 1.00075 0.91261 0.92919 0.92154 0.88221 0.91144 0.98869 0.95808 0.92436 0.93115 0.86664 0.89804 0.89395 0.87058 0.85275 0.89415 0.91414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.21 9.87 127.77 1.26 3.47 16 2 N -0.61 -25.41 2.86 -851.13 -2.43 -27.84 16 3 C 0.26 14.08 5.16 85.63 0.44 14.52 16 4 C -0.54 -31.35 9.39 25.60 0.24 -31.11 16 5 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 6 C 0.01 0.30 5.46 84.65 0.46 0.76 16 7 N -0.93 -56.75 13.29 21.45 0.28 -56.47 16 8 Si 0.97 45.11 29.54 68.60 2.03 47.14 16 9 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 10 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 11 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 12 C 0.50 20.42 6.66 87.65 0.58 21.00 16 13 O -0.59 -31.05 15.24 -3.06 -0.05 -31.10 16 14 C -0.11 -2.84 2.45 -10.66 -0.03 -2.86 16 15 H 0.13 2.41 6.72 -2.39 -0.02 2.39 16 16 C -0.10 -2.25 6.38 31.86 0.20 -2.05 16 17 C 0.03 0.55 4.70 86.71 0.41 0.96 16 18 N -0.53 -11.93 5.32 -882.68 -4.70 -16.63 16 19 C 0.00 0.04 5.15 86.30 0.44 0.49 16 20 C 0.46 8.09 3.07 71.98 0.22 8.31 16 21 F -0.18 -3.19 13.56 44.97 0.61 -2.58 16 22 F -0.18 -3.15 17.32 44.97 0.78 -2.38 16 23 F -0.19 -4.33 17.24 44.97 0.78 -3.55 16 24 C 0.06 1.40 6.23 86.45 0.54 1.94 16 25 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 26 H 0.10 1.86 6.23 -2.39 -0.01 1.84 16 27 H 0.07 1.97 7.83 -2.39 -0.02 1.95 16 28 H -0.01 -0.43 7.50 -2.39 -0.02 -0.45 16 29 H 0.02 1.31 7.86 -2.39 -0.02 1.29 16 30 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 31 H 0.05 1.44 7.86 -2.38 -0.02 1.43 16 32 H 0.12 1.68 7.89 -2.38 -0.02 1.67 16 33 H 0.08 1.12 7.36 -2.39 -0.02 1.10 16 34 H 0.09 1.74 6.96 -2.39 -0.02 1.73 16 35 H 0.11 1.07 7.81 -2.39 -0.02 1.05 16 36 H 0.13 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.09 1.48 7.57 -2.39 -0.02 1.46 16 38 H 0.07 2.24 6.76 -2.39 -0.02 2.23 16 Total: -1.00 -77.36 320.94 3.15 -74.21 By element: Atomic # 1 Polarization: 2.69 SS G_CDS: 1.08 Total: 3.77 kcal Atomic # 6 Polarization: 10.65 SS G_CDS: 4.78 Total: 15.43 kcal Atomic # 7 Polarization: -94.09 SS G_CDS: -6.84 Total: -100.94 kcal Atomic # 8 Polarization: -31.05 SS G_CDS: -0.05 Total: -31.10 kcal Atomic # 9 Polarization: -10.67 SS G_CDS: 2.16 Total: -8.51 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -77.36 3.15 -74.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000471858614.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.004 kcal (2) G-P(sol) polarization free energy of solvation -77.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds