Wall clock time and date at job start Tue Mar 31 2020 07:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47170 * 2 1 4 4 C 1.50703 * 109.47022 * 240.00013 * 2 1 3 5 5 H 1.07994 * 119.99846 * 335.25659 * 4 2 1 6 6 C 1.37876 * 119.99767 * 155.25376 * 4 2 1 7 7 N 1.31519 * 120.00074 * 355.15596 * 6 4 2 8 8 Si 1.86800 * 119.99832 * 175.15303 * 6 4 2 9 9 H 1.48502 * 109.46906 * 90.00341 * 8 6 4 10 10 H 1.48501 * 109.46915 * 210.00230 * 8 6 4 11 11 H 1.48497 * 109.47206 * 330.00196 * 8 6 4 12 12 N 1.46499 * 109.47341 * 120.00211 * 2 1 3 13 13 C 1.34786 * 119.99848 * 274.99911 * 12 2 1 14 14 O 1.21278 * 119.99712 * 0.02562 * 13 12 2 15 15 C 1.50699 * 120.00019 * 179.97438 * 13 12 2 16 16 H 1.08997 * 110.27152 * 57.90733 * 15 13 12 17 17 C 1.54601 * 110.30990 * 295.71842 * 15 13 12 18 18 C 1.54936 * 102.92233 * 219.12615 * 17 15 13 19 19 N 1.48538 * 103.22460 * 37.41104 * 18 17 15 20 20 C 1.46901 * 110.99742 * 200.27726 * 19 18 17 21 21 C 1.52994 * 109.47407 * 287.40052 * 20 19 18 22 22 F 1.39900 * 109.47531 * 59.99836 * 21 20 19 23 23 F 1.39902 * 109.47417 * 180.02562 * 21 20 19 24 24 F 1.39907 * 109.46982 * 300.00205 * 21 20 19 25 25 C 1.47894 * 105.82275 * 320.79413 * 19 18 17 26 26 H 1.09000 * 109.47048 * 295.02801 * 1 2 3 27 27 H 1.08994 * 109.47360 * 55.03000 * 1 2 3 28 28 H 1.09004 * 109.47096 * 175.03367 * 1 2 3 29 29 H 0.96999 * 120.00134 * 5.12184 * 7 6 4 30 30 H 0.96997 * 120.00359 * 95.00224 * 12 2 1 31 31 H 1.09008 * 110.72138 * 337.48450 * 17 15 13 32 32 H 1.09001 * 110.72672 * 100.76553 * 17 15 13 33 33 H 1.09002 * 110.66402 * 278.97917 * 18 17 15 34 34 H 1.09000 * 110.80815 * 155.91684 * 18 17 15 35 35 H 1.09003 * 109.47272 * 47.40040 * 20 19 18 36 36 H 1.08999 * 109.47171 * 167.40011 * 20 19 18 37 37 H 1.08996 * 109.91842 * 265.97643 * 25 19 18 38 38 H 1.08999 * 110.08544 * 144.77539 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 1.4114 -1.4455 -1.7208 6 6 3.2845 -0.4218 -1.7302 7 7 4.0020 0.5397 -1.1914 8 14 3.9619 -1.3965 -3.1726 9 1 3.5744 -0.7335 -4.4437 10 1 5.4426 -1.4570 -3.0773 11 1 3.4072 -2.7737 -3.1435 12 7 2.0184 -0.6906 1.1961 13 6 2.1471 -0.0182 2.3572 14 8 1.8582 1.1584 2.4117 15 6 2.6490 -0.7288 3.5877 16 1 3.6329 -1.1587 3.4007 17 6 1.6522 -1.8305 4.0152 18 6 1.6655 -1.7289 5.5612 19 7 1.7732 -0.2676 5.8048 20 6 2.2748 0.0049 7.1583 21 6 1.1805 -0.3084 8.1805 22 9 0.8198 -1.6563 8.0795 23 9 1.6580 -0.0483 9.4696 24 9 0.0624 0.4936 7.9273 25 6 2.7085 0.2442 4.7798 26 1 -0.3633 0.4348 0.9312 27 1 -0.3634 0.5890 -0.8421 28 1 -0.3633 -1.0238 -0.0890 29 1 3.6831 0.9959 -0.3969 30 1 2.2491 -1.6318 1.1526 31 1 0.6563 -1.6227 3.6235 32 1 1.9987 -2.8115 3.6902 33 1 2.5281 -2.2523 5.9737 34 1 0.7406 -2.1222 5.9831 35 1 3.1459 -0.6200 7.3556 36 1 2.5557 1.0551 7.2371 37 1 3.7206 0.2756 5.1833 38 1 2.4052 1.2413 4.4607 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000471947780.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:12 Heat of formation + Delta-G solvation = -199.600847 kcal Electronic energy + Delta-G solvation = -24408.714695 eV Core-core repulsion = 20256.476168 eV Total energy + Delta-G solvation = -4152.238527 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.22334 -47.80133 -47.63539 -39.84606 -37.90867 -34.94109 -33.17606 -32.06689 -29.67768 -28.98699 -28.00557 -24.75256 -23.50153 -22.54455 -21.48297 -20.72197 -19.16522 -18.70419 -18.57021 -17.73094 -17.49545 -16.47768 -15.93572 -14.89489 -14.81844 -14.60550 -14.50892 -14.26229 -14.18633 -14.04441 -13.85911 -13.84417 -13.80488 -13.51142 -13.01093 -12.82586 -12.39968 -12.06142 -11.88905 -11.60668 -11.49770 -11.25283 -11.11620 -11.00529 -10.88385 -10.75897 -10.25764 -10.06351 -9.22509 -8.83343 -8.71879 -8.49126 -7.85240 -6.57026 -4.37719 2.52746 3.32412 3.34166 3.36948 3.44625 3.51246 3.64231 3.85500 4.10994 4.25110 4.37008 4.46045 4.65038 4.83491 4.99578 5.05029 5.12437 5.30310 5.41098 5.49576 5.69644 5.77662 5.87336 6.06667 6.17387 6.36523 6.52028 6.54026 6.58426 6.60946 7.04554 7.24495 7.65051 7.88705 8.23899 8.58794 8.77309 9.19392 9.42818 10.79811 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.035465 B = 0.003236 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.322386 B = 8650.154107 C = 8739.284098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.235 3.765 3 H 0.053 0.947 4 C -0.609 4.609 5 H 0.056 0.944 6 C 0.030 3.970 7 N -0.891 5.891 8 Si 1.072 2.928 9 H -0.285 1.285 10 H -0.284 1.284 11 H -0.286 1.286 12 N -0.701 5.701 13 C 0.506 3.494 14 O -0.559 6.559 15 C -0.125 4.125 16 H 0.098 0.902 17 C -0.109 4.109 18 C 0.025 3.975 19 N -0.509 5.509 20 C 0.000 4.000 21 C 0.459 3.541 22 F -0.184 7.184 23 F -0.187 7.187 24 F -0.172 7.172 25 C 0.050 3.950 26 H 0.032 0.968 27 H 0.050 0.950 28 H 0.039 0.961 29 H 0.277 0.723 30 H 0.386 0.614 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.052 0.948 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.120 0.880 37 H 0.050 0.950 38 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.591 -5.789 16.934 17.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.135 3.865 3 H 0.071 0.929 4 C -0.647 4.647 5 H 0.075 0.925 6 C -0.178 4.178 7 N -0.524 5.524 8 Si 0.899 3.101 9 H -0.212 1.212 10 H -0.209 1.209 11 H -0.212 1.212 12 N -0.350 5.350 13 C 0.291 3.709 14 O -0.440 6.440 15 C -0.147 4.147 16 H 0.116 0.884 17 C -0.148 4.148 18 C -0.102 4.102 19 N -0.234 5.234 20 C -0.130 4.130 21 C 0.404 3.596 22 F -0.166 7.166 23 F -0.168 7.168 24 F -0.154 7.154 25 C -0.077 4.077 26 H 0.051 0.949 27 H 0.069 0.931 28 H 0.058 0.942 29 H 0.089 0.911 30 H 0.219 0.781 31 H 0.101 0.899 32 H 0.100 0.900 33 H 0.070 0.930 34 H 0.111 0.889 35 H 0.100 0.900 36 H 0.138 0.862 37 H 0.069 0.931 38 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -1.055 -4.778 15.878 16.615 hybrid contribution -0.480 -0.851 1.376 1.688 sum -1.535 -5.629 17.255 18.214 Atomic orbital electron populations 1.21985 0.98523 0.99858 0.99416 1.18863 0.89953 0.94976 0.82678 0.92901 1.22147 1.03864 1.27266 1.11435 0.92547 1.26022 0.93967 0.95832 1.02013 1.70722 1.41057 1.19286 1.21376 0.83513 0.76203 0.75332 0.75019 1.21166 1.20934 1.21221 1.47597 1.64173 1.13531 1.09652 1.20266 0.78505 0.87457 0.84708 1.90596 1.52188 1.16241 1.84932 1.22188 1.00797 0.96803 0.94938 0.88418 1.22452 1.00227 0.97896 0.94188 1.23585 1.02162 0.87745 0.96743 1.64739 1.45635 1.13116 0.99863 1.23396 0.93649 1.06017 0.89966 1.20450 0.83710 0.74333 0.81096 1.93155 1.92928 1.34578 1.95907 1.93179 1.88212 1.93885 1.41570 1.93219 1.54935 1.73314 1.93900 1.22884 0.93791 1.01485 0.89537 0.94915 0.93127 0.94197 0.91092 0.78118 0.89944 0.89982 0.93012 0.88897 0.90040 0.86185 0.93129 0.86852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 9.46 37.16 0.35 -2.70 16 2 C 0.24 5.77 2.28 -69.08 -0.16 5.61 16 3 H 0.05 1.50 6.11 -51.93 -0.32 1.18 16 4 C -0.61 -15.86 8.50 -34.44 -0.29 -16.15 16 5 H 0.06 1.45 7.81 -52.49 -0.41 1.04 16 6 C 0.03 0.81 5.45 -17.82 -0.10 0.72 16 7 N -0.89 -25.73 13.63 55.43 0.76 -24.97 16 8 Si 1.07 23.45 29.91 -169.99 -5.08 18.36 16 9 H -0.29 -6.11 7.11 56.52 0.40 -5.71 16 10 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.29 -5.90 7.11 56.52 0.40 -5.49 16 12 N -0.70 -14.79 5.04 -54.93 -0.28 -15.07 16 13 C 0.51 10.18 6.97 -10.98 -0.08 10.10 16 14 O -0.56 -13.32 14.90 5.56 0.08 -13.24 16 15 C -0.12 -1.83 3.38 -90.41 -0.31 -2.14 16 16 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 17 C -0.11 -1.35 6.58 -24.87 -0.16 -1.51 16 18 C 0.02 0.27 5.41 -1.90 -0.01 0.26 16 19 N -0.51 -6.27 5.17 -230.46 -1.19 -7.46 16 20 C 0.00 0.00 4.83 -3.83 -0.02 -0.02 16 21 C 0.46 4.82 3.28 37.15 0.12 4.94 16 22 F -0.18 -2.01 14.67 2.25 0.03 -1.98 16 23 F -0.19 -1.90 17.32 2.25 0.04 -1.86 16 24 F -0.17 -2.17 17.24 2.25 0.04 -2.13 16 25 C 0.05 0.68 6.27 -2.76 -0.02 0.66 16 26 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.28 8.24 6.66 -40.82 -0.27 7.97 16 30 H 0.39 7.40 8.59 -40.82 -0.35 7.05 16 31 H 0.08 1.16 7.86 -51.92 -0.41 0.75 16 32 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.05 0.49 7.81 -51.93 -0.41 0.08 16 34 H 0.09 1.02 6.73 -51.93 -0.35 0.67 16 35 H 0.08 0.61 7.83 -51.93 -0.41 0.21 16 36 H 0.12 1.00 8.08 -51.93 -0.42 0.58 16 37 H 0.05 0.57 7.77 -51.93 -0.40 0.17 16 38 H 0.11 1.88 6.42 -51.93 -0.33 1.55 16 LS Contribution 323.98 15.07 4.88 4.88 Total: -1.00 -30.50 323.98 -6.37 -36.88 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -4.99 Total: 6.82 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: -0.67 Total: -0.23 kcal Atomic # 7 Polarization: -46.79 SS G_CDS: -0.71 Total: -47.51 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: 0.08 Total: -13.24 kcal Atomic # 9 Polarization: -6.08 SS G_CDS: 0.11 Total: -5.97 kcal Atomic # 14 Polarization: 23.45 SS G_CDS: -5.08 Total: 18.36 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.50 -6.37 -36.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000471947780.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -162.726 kcal (2) G-P(sol) polarization free energy of solvation -30.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds