Wall clock time and date at job start Tue Mar 31 2020 07:35:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47170 * 2 1 4 4 C 1.50703 * 109.47022 * 240.00013 * 2 1 3 5 5 H 1.07994 * 119.99846 * 335.25659 * 4 2 1 6 6 C 1.37876 * 119.99767 * 155.25376 * 4 2 1 7 7 N 1.31519 * 120.00074 * 355.15596 * 6 4 2 8 8 Si 1.86800 * 119.99832 * 175.15303 * 6 4 2 9 9 H 1.48502 * 109.46906 * 90.00341 * 8 6 4 10 10 H 1.48501 * 109.46915 * 210.00230 * 8 6 4 11 11 H 1.48497 * 109.47206 * 330.00196 * 8 6 4 12 12 N 1.46499 * 109.47341 * 120.00211 * 2 1 3 13 13 C 1.34786 * 119.99848 * 274.99911 * 12 2 1 14 14 O 1.21278 * 119.99712 * 0.02562 * 13 12 2 15 15 C 1.50699 * 120.00019 * 179.97438 * 13 12 2 16 16 H 1.08997 * 110.27152 * 57.90733 * 15 13 12 17 17 C 1.54601 * 110.30990 * 295.71842 * 15 13 12 18 18 C 1.54936 * 102.92233 * 219.12615 * 17 15 13 19 19 N 1.48538 * 103.22460 * 37.41104 * 18 17 15 20 20 C 1.46901 * 110.99742 * 200.27726 * 19 18 17 21 21 C 1.52994 * 109.47407 * 287.40052 * 20 19 18 22 22 F 1.39900 * 109.47531 * 59.99836 * 21 20 19 23 23 F 1.39902 * 109.47417 * 180.02562 * 21 20 19 24 24 F 1.39907 * 109.46982 * 300.00205 * 21 20 19 25 25 C 1.47894 * 105.82275 * 320.79413 * 19 18 17 26 26 H 1.09000 * 109.47048 * 295.02801 * 1 2 3 27 27 H 1.08994 * 109.47360 * 55.03000 * 1 2 3 28 28 H 1.09004 * 109.47096 * 175.03367 * 1 2 3 29 29 H 0.96999 * 120.00134 * 5.12184 * 7 6 4 30 30 H 0.96997 * 120.00359 * 95.00224 * 12 2 1 31 31 H 1.09008 * 110.72138 * 337.48450 * 17 15 13 32 32 H 1.09001 * 110.72672 * 100.76553 * 17 15 13 33 33 H 1.09002 * 110.66402 * 278.97917 * 18 17 15 34 34 H 1.09000 * 110.80815 * 155.91684 * 18 17 15 35 35 H 1.09003 * 109.47272 * 47.40040 * 20 19 18 36 36 H 1.08999 * 109.47171 * 167.40011 * 20 19 18 37 37 H 1.08996 * 109.91842 * 265.97643 * 25 19 18 38 38 H 1.08999 * 110.08544 * 144.77539 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 1.4114 -1.4455 -1.7208 6 6 3.2845 -0.4218 -1.7302 7 7 4.0020 0.5397 -1.1914 8 14 3.9619 -1.3965 -3.1726 9 1 3.5744 -0.7335 -4.4437 10 1 5.4426 -1.4570 -3.0773 11 1 3.4072 -2.7737 -3.1435 12 7 2.0184 -0.6906 1.1961 13 6 2.1471 -0.0182 2.3572 14 8 1.8582 1.1584 2.4117 15 6 2.6490 -0.7288 3.5877 16 1 3.6329 -1.1587 3.4007 17 6 1.6522 -1.8305 4.0152 18 6 1.6655 -1.7289 5.5612 19 7 1.7732 -0.2676 5.8048 20 6 2.2748 0.0049 7.1583 21 6 1.1805 -0.3084 8.1805 22 9 0.8198 -1.6563 8.0795 23 9 1.6580 -0.0483 9.4696 24 9 0.0624 0.4936 7.9273 25 6 2.7085 0.2442 4.7798 26 1 -0.3633 0.4348 0.9312 27 1 -0.3634 0.5890 -0.8421 28 1 -0.3633 -1.0238 -0.0890 29 1 3.6831 0.9959 -0.3969 30 1 2.2491 -1.6318 1.1526 31 1 0.6563 -1.6227 3.6235 32 1 1.9987 -2.8115 3.6902 33 1 2.5281 -2.2523 5.9737 34 1 0.7406 -2.1222 5.9831 35 1 3.1459 -0.6200 7.3556 36 1 2.5557 1.0551 7.2371 37 1 3.7206 0.2756 5.1833 38 1 2.4052 1.2413 4.4607 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000471947780.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:11 Heat of formation + Delta-G solvation = -221.306289 kcal Electronic energy + Delta-G solvation = -24409.655914 eV Core-core repulsion = 20256.476168 eV Total energy + Delta-G solvation = -4153.179746 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -51.05964 -48.61322 -48.52032 -41.18738 -39.24354 -36.82185 -34.41218 -33.81102 -31.34249 -30.02858 -29.04939 -26.77181 -24.56752 -23.81929 -22.54540 -22.22776 -20.73077 -19.56507 -19.42490 -19.25293 -18.62857 -18.02344 -16.98536 -16.42349 -15.86185 -15.79869 -15.64729 -15.53256 -15.41415 -15.25143 -15.16886 -14.99131 -14.72514 -14.71129 -14.46037 -13.88185 -13.79089 -13.39017 -13.11503 -12.90873 -12.88598 -12.64824 -12.59943 -12.40938 -12.28970 -12.05576 -11.86295 -11.79081 -11.08952 -10.55505 -10.52496 -9.68205 -9.63361 -8.69685 -6.51027 1.57679 1.62993 1.71613 1.82674 1.85639 2.45097 2.54461 2.60313 2.86440 3.07626 3.26051 3.33975 3.52272 3.65837 3.95115 4.09809 4.21544 4.26770 4.32560 4.38091 4.50415 4.58653 4.70404 4.72148 4.86364 4.89319 5.02968 5.07241 5.19883 5.29620 5.59890 5.70805 5.76057 5.99725 6.12976 6.45952 7.01436 7.38352 7.56005 8.65754 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.035465 B = 0.003236 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.322386 B = 8650.154107 C = 8739.284098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.236 3.764 3 H 0.005 0.995 4 C -0.614 4.614 5 H 0.062 0.938 6 C -0.017 4.017 7 N -0.921 5.921 8 Si 1.122 2.878 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.261 1.261 12 N -0.700 5.700 13 C 0.500 3.500 14 O -0.603 6.603 15 C -0.117 4.117 16 H 0.120 0.880 17 C -0.104 4.104 18 C 0.031 3.969 19 N -0.532 5.532 20 C 0.002 3.998 21 C 0.459 3.541 22 F -0.186 7.186 23 F -0.184 7.184 24 F -0.189 7.189 25 C 0.056 3.944 26 H 0.028 0.972 27 H 0.049 0.951 28 H 0.058 0.942 29 H 0.257 0.743 30 H 0.398 0.602 31 H 0.060 0.940 32 H 0.109 0.891 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.111 0.889 36 H 0.130 0.870 37 H 0.079 0.921 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.961 -8.198 17.715 19.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.134 3.866 3 H 0.023 0.977 4 C -0.652 4.652 5 H 0.080 0.920 6 C -0.218 4.218 7 N -0.556 5.556 8 Si 0.943 3.057 9 H -0.204 1.204 10 H -0.212 1.212 11 H -0.185 1.185 12 N -0.348 5.348 13 C 0.287 3.713 14 O -0.486 6.486 15 C -0.139 4.139 16 H 0.137 0.863 17 C -0.143 4.143 18 C -0.096 4.096 19 N -0.257 5.257 20 C -0.128 4.128 21 C 0.405 3.595 22 F -0.167 7.167 23 F -0.166 7.166 24 F -0.170 7.170 25 C -0.072 4.072 26 H 0.047 0.953 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.233 0.767 31 H 0.078 0.922 32 H 0.127 0.873 33 H 0.097 0.903 34 H 0.112 0.888 35 H 0.129 0.871 36 H 0.148 0.852 37 H 0.097 0.903 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.448 -7.219 16.688 18.188 hybrid contribution -0.761 -0.058 1.206 1.428 sum -1.210 -7.277 17.894 19.355 Atomic orbital electron populations 1.21863 0.96703 1.00938 0.99226 1.18609 0.91353 0.92707 0.83894 0.97664 1.22388 1.03891 1.26899 1.12008 0.91956 1.27457 0.94550 0.95724 1.04091 1.70870 1.41917 1.21206 1.21655 0.82883 0.75465 0.75224 0.72143 1.20430 1.21200 1.18537 1.47129 1.64471 1.13958 1.09289 1.21156 0.77329 0.87036 0.85797 1.90579 1.53812 1.18422 1.85773 1.22178 1.02113 0.97331 0.92233 0.86255 1.22469 0.98301 0.98133 0.95348 1.23599 1.03416 0.87141 0.95462 1.64592 1.46075 1.14121 1.00875 1.23486 0.93883 1.07392 0.88001 1.20606 0.83444 0.73994 0.81463 1.93149 1.92988 1.34676 1.95934 1.93184 1.88075 1.93858 1.41461 1.93189 1.55986 1.73821 1.94034 1.22700 0.95446 0.99301 0.89703 0.95297 0.93153 0.92323 0.93217 0.76718 0.92158 0.87266 0.90309 0.88843 0.87094 0.85223 0.90283 0.90501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.68 9.46 71.98 0.68 -5.00 16 2 C 0.24 11.84 2.28 44.25 0.10 11.94 16 3 H 0.01 0.32 6.11 -2.38 -0.01 0.30 16 4 C -0.61 -31.94 8.50 25.60 0.22 -31.73 16 5 H 0.06 3.13 7.81 -2.91 -0.02 3.10 16 6 C -0.02 -0.89 5.45 84.65 0.46 -0.43 16 7 N -0.92 -54.48 13.63 21.45 0.29 -54.18 16 8 Si 1.12 46.36 29.91 68.60 2.05 48.41 16 9 H -0.28 -11.14 7.11 99.48 0.71 -10.44 16 10 H -0.29 -11.88 7.11 99.48 0.71 -11.18 16 11 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 12 N -0.70 -29.72 5.04 -446.08 -2.25 -31.97 16 13 C 0.50 20.37 6.97 87.66 0.61 20.98 16 14 O -0.60 -30.02 14.90 -3.02 -0.05 -30.06 16 15 C -0.12 -3.24 3.38 -10.66 -0.04 -3.28 16 16 H 0.12 2.85 8.14 -2.39 -0.02 2.83 16 17 C -0.10 -2.32 6.58 31.80 0.21 -2.11 16 18 C 0.03 0.58 5.41 86.65 0.47 1.05 16 19 N -0.53 -12.04 5.17 -883.04 -4.56 -16.60 16 20 C 0.00 0.04 4.83 86.30 0.42 0.45 16 21 C 0.46 8.76 3.28 71.98 0.24 8.99 16 22 F -0.19 -3.64 14.67 44.97 0.66 -2.98 16 23 F -0.18 -3.38 17.32 44.97 0.78 -2.60 16 24 F -0.19 -4.59 17.24 44.97 0.78 -3.82 16 25 C 0.06 1.44 6.27 86.45 0.54 1.98 16 26 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.06 2.33 8.14 -2.38 -0.02 2.31 16 29 H 0.26 16.01 6.66 -92.71 -0.62 15.39 16 30 H 0.40 14.93 8.59 -92.71 -0.80 14.14 16 31 H 0.06 1.62 7.86 -2.38 -0.02 1.60 16 32 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.08 1.10 7.81 -2.39 -0.02 1.08 16 34 H 0.09 1.80 6.73 -2.39 -0.02 1.78 16 35 H 0.11 1.20 7.83 -2.39 -0.02 1.18 16 36 H 0.13 1.86 8.08 -2.39 -0.02 1.84 16 37 H 0.08 1.57 7.77 -2.39 -0.02 1.55 16 38 H 0.08 2.60 6.42 -2.39 -0.02 2.59 16 Total: -1.00 -68.66 323.98 2.05 -66.61 By element: Atomic # 1 Polarization: 23.90 SS G_CDS: 0.45 Total: 24.35 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: 3.91 Total: 2.86 kcal Atomic # 7 Polarization: -96.24 SS G_CDS: -6.52 Total: -102.76 kcal Atomic # 8 Polarization: -30.02 SS G_CDS: -0.05 Total: -30.06 kcal Atomic # 9 Polarization: -11.61 SS G_CDS: 2.21 Total: -9.40 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.05 Total: 48.41 kcal Total: -68.66 2.05 -66.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000471947780.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -154.700 kcal (2) G-P(sol) polarization free energy of solvation -68.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -223.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -221.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds