Wall clock time and date at job start Tue Mar 31 2020 06:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47249 * 2 1 4 4 H 1.09005 * 109.46934 * 54.53976 * 3 2 1 5 5 C 1.50696 * 109.47295 * 174.53748 * 3 2 1 6 6 H 1.08002 * 119.99615 * 119.99522 * 5 3 2 7 7 C 1.37877 * 120.00167 * 300.00125 * 5 3 2 8 8 N 1.31518 * 120.00103 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99895 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.47122 * 60.00064 * 9 7 5 11 11 H 1.48499 * 109.47420 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47384 * 299.99967 * 9 7 5 13 13 N 1.46899 * 109.46960 * 294.54280 * 3 2 1 14 14 C 1.46892 * 111.00002 * 153.64972 * 13 3 2 15 15 H 1.08994 * 110.43663 * 30.22465 * 14 13 3 16 16 C 1.54629 * 110.48766 * 152.77335 * 14 13 3 17 17 C 1.54483 * 101.76725 * 143.60607 * 16 14 13 18 18 N 1.46764 * 105.47332 * 334.58297 * 17 16 14 19 19 C 1.46501 * 124.35241 * 197.01871 * 18 17 16 20 20 C 1.52999 * 109.47162 * 89.99909 * 19 18 17 21 21 F 1.39894 * 109.47249 * 59.99949 * 20 19 18 22 22 F 1.39897 * 109.46867 * 180.02562 * 20 19 18 23 23 F 1.39903 * 109.47092 * 300.00289 * 20 19 18 24 24 C 1.34420 * 111.29785 * 17.27968 * 18 17 16 25 25 O 1.21289 * 124.93847 * 179.30025 * 24 18 17 26 26 H 1.09001 * 109.46994 * 61.54602 * 1 2 3 27 27 H 1.09003 * 109.46987 * 181.54105 * 1 2 3 28 28 H 1.08999 * 109.47157 * 301.54186 * 1 2 3 29 29 H 1.08999 * 109.47334 * 239.99503 * 2 1 3 30 30 H 1.09004 * 109.46878 * 119.99778 * 2 1 3 31 31 H 0.96996 * 119.99970 * 179.97438 * 8 7 5 32 32 H 1.00901 * 110.99773 * 29.68717 * 13 3 2 33 33 H 1.09004 * 110.97046 * 25.48839 * 16 14 13 34 34 H 1.08998 * 110.96998 * 261.72247 * 16 14 13 35 35 H 1.08998 * 110.24460 * 215.58768 * 17 16 14 36 36 H 1.08995 * 110.24805 * 93.58286 * 17 16 14 37 37 H 1.08999 * 109.46339 * 329.99812 * 19 18 17 38 38 H 1.09003 * 109.47178 * 210.00088 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5990 1.9838 0.8371 5 6 3.5409 1.4447 0.1352 6 1 4.1520 1.8871 -0.6375 7 6 4.1339 0.8818 1.2454 8 7 3.3897 0.3433 2.1866 9 14 5.9944 0.8838 1.4127 10 1 6.4898 2.2837 1.4123 11 1 6.3777 0.2229 2.6860 12 1 6.5948 0.1460 0.2723 13 7 1.6609 2.0959 -1.2599 14 6 1.5496 3.5503 -1.0859 15 1 2.2357 3.8946 -0.3122 16 6 1.8301 4.2780 -2.4211 17 6 0.8340 5.4568 -2.3526 18 7 -0.2483 5.0042 -1.4708 19 6 -1.5691 5.6334 -1.3930 20 6 -2.5083 4.9743 -2.4050 21 9 -2.6236 3.6106 -2.1150 22 9 -3.7694 5.5755 -2.3311 23 9 -1.9906 5.1345 -3.6948 24 6 0.1299 3.9416 -0.7395 25 8 -0.5667 3.3773 0.0775 26 1 -0.3633 0.4896 -0.9035 27 1 -0.3633 -1.0273 0.0276 28 1 -0.3633 0.5376 0.8758 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.8069 -0.0530 2.9675 32 1 0.8034 1.7085 -1.6243 33 1 1.6116 3.6316 -3.2711 34 1 2.8582 4.6380 -2.4607 35 1 0.4434 5.6787 -3.3458 36 1 1.3198 6.3373 -1.9322 37 1 -1.4791 6.6959 -1.6190 38 1 -1.9724 5.5085 -0.3880 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000514947591.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:55 Heat of formation + Delta-G solvation = -185.634029 kcal Electronic energy + Delta-G solvation = -25246.009843 eV Core-core repulsion = 21094.376963 eV Total energy + Delta-G solvation = -4151.632880 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.16654 -47.73192 -47.60506 -40.37358 -36.28041 -36.15222 -33.46125 -31.81788 -30.37187 -28.26129 -26.96897 -25.42510 -23.65529 -22.63910 -21.40029 -19.69747 -19.57015 -18.58249 -18.56163 -17.75562 -16.42841 -16.39078 -16.08886 -15.22661 -14.66014 -14.61060 -14.56640 -14.11054 -14.08414 -13.81147 -13.80121 -13.73749 -13.59948 -13.01549 -12.82804 -12.70353 -12.59396 -12.14061 -12.06156 -11.80279 -11.44602 -11.05954 -10.88917 -10.70719 -10.62799 -9.94636 -9.88964 -9.59965 -9.53713 -9.06516 -8.96642 -8.32886 -7.34884 -5.94217 -3.99823 2.36969 2.70027 2.91968 3.34190 3.39382 3.41542 3.69174 3.84069 4.15191 4.44056 4.51762 4.67776 4.88498 4.90415 5.08300 5.21556 5.34335 5.45189 5.56928 5.83903 6.15737 6.29110 6.31178 6.32470 6.37266 6.58269 6.95510 7.00788 7.16652 7.22489 7.51785 7.79544 7.89210 8.20255 8.27259 8.39644 8.66098 9.07164 9.64704 11.10971 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.026393 B = 0.004464 C = 0.004104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.619067 B = 6271.039218 C = 6821.745447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.124 4.124 3 C 0.216 3.784 4 H 0.015 0.985 5 C -0.499 4.499 6 H 0.062 0.938 7 C 0.056 3.944 8 N -0.893 5.893 9 Si 0.896 3.104 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.278 1.278 13 N -0.655 5.655 14 C 0.071 3.929 15 H 0.120 0.880 16 C -0.120 4.120 17 C 0.100 3.900 18 N -0.627 5.627 19 C 0.088 3.912 20 C 0.431 3.569 21 F -0.173 7.173 22 F -0.185 7.185 23 F -0.184 7.184 24 C 0.489 3.511 25 O -0.503 6.503 26 H 0.031 0.969 27 H 0.033 0.967 28 H 0.047 0.953 29 H 0.038 0.962 30 H 0.100 0.900 31 H 0.260 0.740 32 H 0.324 0.676 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.121 0.879 38 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.496 12.719 -9.631 18.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.163 4.163 3 C 0.109 3.891 4 H 0.032 0.968 5 C -0.538 4.538 6 H 0.080 0.920 7 C -0.145 4.145 8 N -0.532 5.532 9 Si 0.724 3.276 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.203 1.203 13 N -0.285 5.285 14 C -0.044 4.044 15 H 0.138 0.862 16 C -0.158 4.158 17 C -0.022 4.022 18 N -0.364 5.364 19 C -0.039 4.039 20 C 0.375 3.625 21 F -0.155 7.155 22 F -0.167 7.167 23 F -0.166 7.166 24 C 0.275 3.725 25 O -0.375 6.375 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.067 0.933 29 H 0.057 0.943 30 H 0.118 0.882 31 H 0.070 0.930 32 H 0.142 0.858 33 H 0.105 0.895 34 H 0.112 0.888 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.139 0.861 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -8.254 12.297 -9.222 17.447 hybrid contribution -0.198 0.020 0.403 0.449 sum -8.452 12.318 -8.819 17.347 Atomic orbital electron populations 1.21824 0.99164 0.99123 1.00153 1.21751 0.91541 1.00073 1.02891 1.19282 0.95255 0.90337 0.84199 0.96771 1.21165 0.91070 1.37114 1.04418 0.92016 1.24964 0.98039 0.95616 0.95833 1.69883 1.34779 1.39028 1.09514 0.86606 0.85779 0.78069 0.77143 1.20460 1.21513 1.20321 1.61063 1.35974 0.98815 1.32693 1.22358 0.91095 0.92830 0.98119 0.86214 1.22681 0.99334 0.95224 0.98574 1.22287 0.87498 0.98420 0.94017 1.48345 1.11396 1.32895 1.43765 1.22397 0.83333 0.98515 0.99614 1.21441 0.80630 0.78162 0.82310 1.93255 1.96066 1.33010 1.93123 1.93176 1.43762 1.83441 1.96328 1.93167 1.86514 1.95370 1.41516 1.22818 0.91737 0.78524 0.79386 1.90751 1.59602 1.54378 1.32773 0.94965 0.94774 0.93341 0.94288 0.88226 0.92987 0.85766 0.89505 0.88800 0.90289 0.90706 0.86119 0.85844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.14 9.72 37.16 0.36 -2.77 16 2 C -0.12 -3.03 5.35 -26.73 -0.14 -3.17 16 3 C 0.22 5.39 1.87 -68.86 -0.13 5.26 16 4 H 0.01 0.41 7.69 -51.93 -0.40 0.01 16 5 C -0.50 -13.41 8.62 -34.44 -0.30 -13.71 16 6 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 7 C 0.06 1.54 5.29 -17.82 -0.09 1.45 16 8 N -0.89 -25.49 11.29 55.43 0.63 -24.87 16 9 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 N -0.65 -13.57 6.13 -100.97 -0.62 -14.19 16 14 C 0.07 1.23 3.01 -67.72 -0.20 1.03 16 15 H 0.12 2.29 7.72 -51.93 -0.40 1.89 16 16 C -0.12 -1.49 6.89 -25.10 -0.17 -1.66 16 17 C 0.10 0.99 7.26 -3.12 -0.02 0.97 16 18 N -0.63 -7.94 2.80 -172.41 -0.48 -8.43 16 19 C 0.09 0.89 5.91 -4.04 -0.02 0.86 16 20 C 0.43 5.06 3.29 37.16 0.12 5.19 16 21 F -0.17 -2.65 16.97 2.25 0.04 -2.61 16 22 F -0.19 -2.07 17.32 2.25 0.04 -2.03 16 23 F -0.18 -2.15 16.54 2.25 0.04 -2.11 16 24 C 0.49 8.44 7.09 -10.86 -0.08 8.36 16 25 O -0.50 -10.64 17.44 5.55 0.10 -10.54 16 26 H 0.03 0.65 6.50 -51.93 -0.34 0.32 16 27 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.10 2.71 5.94 -51.93 -0.31 2.41 16 31 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 32 H 0.32 6.61 6.20 -39.29 -0.24 6.37 16 33 H 0.09 1.10 8.09 -51.93 -0.42 0.68 16 34 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.08 0.65 7.52 -51.93 -0.39 0.26 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.12 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.12 1.29 7.92 -51.93 -0.41 0.88 16 LS Contribution 326.20 15.07 4.92 4.92 Total: -1.00 -31.11 326.20 -6.04 -37.15 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -4.99 Total: 4.81 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: -0.68 Total: 1.80 kcal Atomic # 7 Polarization: -47.01 SS G_CDS: -0.48 Total: -47.49 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.10 Total: -10.54 kcal Atomic # 9 Polarization: -6.86 SS G_CDS: 0.11 Total: -6.75 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.11 -6.04 -37.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514947591.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.480 kcal (2) G-P(sol) polarization free energy of solvation -31.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds