Wall clock time and date at job start Tue Mar 31 2020 06:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47249 * 2 1 4 4 H 1.09005 * 109.46934 * 54.53976 * 3 2 1 5 5 C 1.50696 * 109.47295 * 174.53748 * 3 2 1 6 6 H 1.08002 * 119.99615 * 119.99522 * 5 3 2 7 7 C 1.37877 * 120.00167 * 300.00125 * 5 3 2 8 8 N 1.31518 * 120.00103 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99895 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.47122 * 60.00064 * 9 7 5 11 11 H 1.48499 * 109.47420 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47384 * 299.99967 * 9 7 5 13 13 N 1.46899 * 109.46960 * 294.54280 * 3 2 1 14 14 C 1.46892 * 111.00002 * 153.64972 * 13 3 2 15 15 H 1.08994 * 110.43663 * 30.22465 * 14 13 3 16 16 C 1.54629 * 110.48766 * 152.77335 * 14 13 3 17 17 C 1.54483 * 101.76725 * 143.60607 * 16 14 13 18 18 N 1.46764 * 105.47332 * 334.58297 * 17 16 14 19 19 C 1.46501 * 124.35241 * 197.01871 * 18 17 16 20 20 C 1.52999 * 109.47162 * 89.99909 * 19 18 17 21 21 F 1.39894 * 109.47249 * 59.99949 * 20 19 18 22 22 F 1.39897 * 109.46867 * 180.02562 * 20 19 18 23 23 F 1.39903 * 109.47092 * 300.00289 * 20 19 18 24 24 C 1.34420 * 111.29785 * 17.27968 * 18 17 16 25 25 O 1.21289 * 124.93847 * 179.30025 * 24 18 17 26 26 H 1.09001 * 109.46994 * 61.54602 * 1 2 3 27 27 H 1.09003 * 109.46987 * 181.54105 * 1 2 3 28 28 H 1.08999 * 109.47157 * 301.54186 * 1 2 3 29 29 H 1.08999 * 109.47334 * 239.99503 * 2 1 3 30 30 H 1.09004 * 109.46878 * 119.99778 * 2 1 3 31 31 H 0.96996 * 119.99970 * 179.97438 * 8 7 5 32 32 H 1.00901 * 110.99773 * 29.68717 * 13 3 2 33 33 H 1.09004 * 110.97046 * 25.48839 * 16 14 13 34 34 H 1.08998 * 110.96998 * 261.72247 * 16 14 13 35 35 H 1.08998 * 110.24460 * 215.58768 * 17 16 14 36 36 H 1.08995 * 110.24805 * 93.58286 * 17 16 14 37 37 H 1.08999 * 109.46339 * 329.99812 * 19 18 17 38 38 H 1.09003 * 109.47178 * 210.00088 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5990 1.9838 0.8371 5 6 3.5409 1.4447 0.1352 6 1 4.1520 1.8871 -0.6375 7 6 4.1339 0.8818 1.2454 8 7 3.3897 0.3433 2.1866 9 14 5.9944 0.8838 1.4127 10 1 6.4898 2.2837 1.4123 11 1 6.3777 0.2229 2.6860 12 1 6.5948 0.1460 0.2723 13 7 1.6609 2.0959 -1.2599 14 6 1.5496 3.5503 -1.0859 15 1 2.2357 3.8946 -0.3122 16 6 1.8301 4.2780 -2.4211 17 6 0.8340 5.4568 -2.3526 18 7 -0.2483 5.0042 -1.4708 19 6 -1.5691 5.6334 -1.3930 20 6 -2.5083 4.9743 -2.4050 21 9 -2.6236 3.6106 -2.1150 22 9 -3.7694 5.5755 -2.3311 23 9 -1.9906 5.1345 -3.6948 24 6 0.1299 3.9416 -0.7395 25 8 -0.5667 3.3773 0.0775 26 1 -0.3633 0.4896 -0.9035 27 1 -0.3633 -1.0273 0.0276 28 1 -0.3633 0.5376 0.8758 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.8069 -0.0530 2.9675 32 1 0.8034 1.7085 -1.6243 33 1 1.6116 3.6316 -3.2711 34 1 2.8582 4.6380 -2.4607 35 1 0.4434 5.6787 -3.3458 36 1 1.3198 6.3373 -1.9322 37 1 -1.4791 6.6959 -1.6190 38 1 -1.9724 5.5085 -0.3880 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000514947591.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:55 Heat of formation + Delta-G solvation = -206.810435 kcal Electronic energy + Delta-G solvation = -25246.928121 eV Core-core repulsion = 21094.376963 eV Total energy + Delta-G solvation = -4152.551158 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -51.11989 -48.65168 -48.61936 -41.61669 -37.89961 -37.55858 -34.92242 -33.65667 -31.85956 -29.36548 -28.68872 -26.94913 -24.78241 -24.36776 -22.53925 -21.50779 -20.88724 -19.55030 -19.53737 -18.77538 -18.28984 -17.62990 -17.46490 -16.78015 -16.28584 -15.68493 -15.52709 -15.47143 -15.27663 -15.06301 -14.87568 -14.78639 -14.76813 -14.61260 -14.39680 -14.05157 -13.66378 -13.57415 -13.32990 -13.17844 -13.02971 -12.78810 -12.56109 -12.50192 -12.00622 -11.95613 -11.56707 -11.42252 -11.33112 -10.91752 -10.41223 -10.00742 -9.08454 -8.03070 -6.16769 1.23712 1.45909 1.48217 1.55608 1.63915 1.87652 2.47096 2.79349 2.96728 3.21430 3.23577 3.31924 3.62628 3.73666 4.06184 4.17648 4.23656 4.29120 4.44966 4.51907 4.60470 4.70014 4.72229 5.07506 5.16393 5.20543 5.26703 5.31107 5.35095 5.59235 5.75456 5.81482 5.86126 6.32501 6.40999 6.77584 6.97015 7.00603 7.52180 9.00852 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.026393 B = 0.004464 C = 0.004104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.619067 B = 6271.039218 C = 6821.745447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.120 4.120 3 C 0.227 3.773 4 H -0.031 1.031 5 C -0.511 4.511 6 H 0.062 0.938 7 C 0.006 3.994 8 N -0.924 5.924 9 Si 0.962 3.038 10 H -0.269 1.269 11 H -0.290 1.290 12 H -0.271 1.271 13 N -0.652 5.652 14 C 0.058 3.942 15 H 0.096 0.904 16 C -0.109 4.109 17 C 0.103 3.897 18 N -0.617 5.617 19 C 0.087 3.913 20 C 0.431 3.569 21 F -0.199 7.199 22 F -0.181 7.181 23 F -0.181 7.181 24 C 0.485 3.515 25 O -0.553 6.553 26 H 0.043 0.957 27 H 0.056 0.944 28 H 0.026 0.974 29 H 0.040 0.960 30 H 0.069 0.931 31 H 0.259 0.741 32 H 0.324 0.676 33 H 0.087 0.913 34 H 0.112 0.888 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.172 0.828 38 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.998 14.798 -11.589 20.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.159 4.159 3 C 0.119 3.881 4 H -0.013 1.013 5 C -0.549 4.549 6 H 0.080 0.920 7 C -0.192 4.192 8 N -0.564 5.564 9 Si 0.788 3.212 10 H -0.194 1.194 11 H -0.216 1.216 12 H -0.196 1.196 13 N -0.282 5.282 14 C -0.056 4.056 15 H 0.114 0.886 16 C -0.147 4.147 17 C -0.018 4.018 18 N -0.352 5.352 19 C -0.038 4.038 20 C 0.375 3.625 21 F -0.181 7.181 22 F -0.162 7.162 23 F -0.162 7.162 24 C 0.272 3.728 25 O -0.430 6.430 26 H 0.062 0.938 27 H 0.075 0.925 28 H 0.045 0.955 29 H 0.059 0.941 30 H 0.087 0.913 31 H 0.068 0.932 32 H 0.142 0.858 33 H 0.105 0.895 34 H 0.130 0.870 35 H 0.126 0.874 36 H 0.126 0.874 37 H 0.190 0.810 38 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -7.758 14.436 -11.240 19.873 hybrid contribution -0.411 -0.554 0.967 1.188 sum -8.170 13.882 -10.272 19.104 Atomic orbital electron populations 1.21643 0.97071 1.00318 0.99654 1.21610 0.93375 0.99555 1.01344 1.18956 0.94254 0.90359 0.84554 1.01330 1.21450 0.92127 1.36883 1.04475 0.91996 1.25781 1.02641 0.95257 0.95499 1.70048 1.36593 1.39813 1.09960 0.85554 0.80205 0.78451 0.77026 1.19390 1.21565 1.19611 1.61004 1.36105 1.00882 1.30239 1.22466 0.91377 0.91130 1.00615 0.88650 1.22669 1.01381 0.95574 0.95115 1.22567 0.86073 0.97984 0.95176 1.48279 1.12960 1.31315 1.42623 1.22714 0.81338 1.00624 0.99090 1.21637 0.81115 0.77051 0.82720 1.93213 1.96231 1.35274 1.93348 1.93186 1.43591 1.83138 1.96333 1.93171 1.86442 1.95228 1.41399 1.22635 0.91351 0.79474 0.79377 1.90724 1.60711 1.56399 1.35122 0.93830 0.92513 0.95487 0.94074 0.91265 0.93191 0.85785 0.89475 0.87007 0.87410 0.87444 0.81006 0.86345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.73 9.72 71.98 0.70 -5.03 16 2 C -0.12 -6.07 5.35 30.60 0.16 -5.91 16 3 C 0.23 11.76 1.87 44.17 0.08 11.85 16 4 H -0.03 -1.86 7.69 -2.38 -0.02 -1.88 16 5 C -0.51 -28.07 8.62 25.60 0.22 -27.85 16 6 H 0.06 3.32 7.81 -2.91 -0.02 3.30 16 7 C 0.01 0.34 5.29 84.65 0.45 0.79 16 8 N -0.92 -54.55 11.29 21.45 0.24 -54.30 16 9 Si 0.96 43.65 29.54 68.60 2.03 45.67 16 10 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 11 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 12 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 13 N -0.65 -27.54 6.13 -473.35 -2.90 -30.45 16 14 C 0.06 2.04 3.01 44.91 0.14 2.18 16 15 H 0.10 3.77 7.72 -2.39 -0.02 3.76 16 16 C -0.11 -2.45 6.89 31.65 0.22 -2.23 16 17 C 0.10 1.61 7.26 86.83 0.63 2.24 16 18 N -0.62 -14.18 2.80 -817.96 -2.29 -16.48 16 19 C 0.09 1.52 5.91 86.38 0.51 2.03 16 20 C 0.43 9.20 3.29 71.98 0.24 9.44 16 21 F -0.20 -5.99 16.97 44.97 0.76 -5.23 16 22 F -0.18 -3.65 17.32 44.97 0.78 -2.87 16 23 F -0.18 -3.66 16.54 44.97 0.74 -2.92 16 24 C 0.48 16.76 7.09 87.90 0.62 17.38 16 25 O -0.55 -24.28 17.44 -3.06 -0.05 -24.33 16 26 H 0.04 1.80 6.50 -2.39 -0.02 1.79 16 27 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 28 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.07 3.94 5.94 -2.38 -0.01 3.92 16 31 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 32 H 0.32 13.44 6.20 -89.69 -0.56 12.89 16 33 H 0.09 1.98 8.09 -2.39 -0.02 1.96 16 34 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.11 1.20 7.52 -2.39 -0.02 1.18 16 36 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.17 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.12 2.28 7.92 -2.39 -0.02 2.26 16 Total: -1.00 -71.50 326.20 3.81 -67.69 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: 0.53 Total: 18.34 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: 3.97 Total: 4.88 kcal Atomic # 7 Polarization: -96.28 SS G_CDS: -4.95 Total: -101.23 kcal Atomic # 8 Polarization: -24.28 SS G_CDS: -0.05 Total: -24.33 kcal Atomic # 9 Polarization: -13.30 SS G_CDS: 2.29 Total: -11.02 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.67 kcal Total: -71.50 3.81 -67.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514947591.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.117 kcal (2) G-P(sol) polarization free energy of solvation -71.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds