Wall clock time and date at job start Tue Mar 31 2020 06:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46776 * 2 1 4 4 H 1.09003 * 109.46868 * 304.05899 * 3 2 1 5 5 C 1.50701 * 109.46902 * 184.06348 * 3 2 1 6 6 H 1.08000 * 120.00191 * 240.00189 * 5 3 2 7 7 C 1.37873 * 120.00211 * 59.99624 * 5 3 2 8 8 N 1.31517 * 120.00017 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 120.00391 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.46693 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47065 * 120.00156 * 9 7 5 12 12 H 1.48497 * 109.47240 * 240.00278 * 9 7 5 13 13 N 1.46901 * 109.47307 * 64.06377 * 3 2 1 14 14 C 1.46892 * 110.99761 * 204.17719 * 13 3 2 15 15 H 1.09000 * 110.54151 * 324.21552 * 14 13 3 16 16 C 1.54632 * 110.48846 * 201.60035 * 14 13 3 17 17 C 1.54475 * 101.76682 * 266.12159 * 16 14 13 18 18 N 1.46757 * 105.47408 * 334.58104 * 17 16 14 19 19 C 1.46506 * 124.35162 * 197.03481 * 18 17 16 20 20 C 1.52990 * 109.47303 * 270.00196 * 19 18 17 21 21 F 1.39905 * 109.47501 * 60.00113 * 20 19 18 22 22 F 1.39901 * 109.47230 * 179.97438 * 20 19 18 23 23 F 1.39899 * 109.47488 * 299.99851 * 20 19 18 24 24 C 1.34421 * 111.30350 * 17.01725 * 18 17 16 25 25 O 1.21282 * 124.94507 * 179.32754 * 24 18 17 26 26 H 1.08995 * 109.47473 * 294.89499 * 1 2 3 27 27 H 1.09001 * 109.46996 * 54.90528 * 1 2 3 28 28 H 1.09001 * 109.46916 * 174.89946 * 1 2 3 29 29 H 1.08997 * 109.47499 * 239.99558 * 2 1 3 30 30 H 1.09001 * 109.46888 * 119.99422 * 2 1 3 31 31 H 0.97000 * 120.00536 * 179.97438 * 8 7 5 32 32 H 1.00898 * 111.00123 * 80.22058 * 13 3 2 33 33 H 1.09003 * 110.96855 * 147.99707 * 16 14 13 34 34 H 1.09003 * 110.96345 * 24.24034 * 16 14 13 35 35 H 1.09004 * 110.24558 * 215.57744 * 17 16 14 36 36 H 1.09004 * 110.32075 * 93.61755 * 17 16 14 37 37 H 1.09004 * 109.46803 * 30.00638 * 19 18 17 38 38 H 1.08999 * 109.47065 * 149.99669 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6184 1.9769 -0.8514 5 6 3.5436 1.4438 -0.1007 6 1 4.1369 1.8926 0.6822 7 6 4.1619 0.8719 -1.1922 8 7 3.4395 0.3257 -2.1459 9 14 6.0257 0.8740 -1.3174 10 1 6.6011 1.5456 -0.1244 11 1 6.5190 -0.5251 -1.3833 12 1 6.4387 1.6027 -2.5436 13 7 1.6320 2.1061 1.2455 14 6 1.5747 3.5635 1.0710 15 1 2.3658 3.8999 0.4008 16 6 1.6843 4.2771 2.4385 17 6 0.1982 4.4711 2.8126 18 7 -0.5274 4.4899 1.5370 19 6 -1.8910 4.9986 1.3691 20 6 -2.8904 3.8614 1.5897 21 9 -2.7389 3.3519 2.8839 22 9 -4.1925 4.3473 1.4299 23 9 -2.6537 2.8451 0.6579 24 6 0.2200 3.9808 0.5425 25 8 -0.1411 3.8675 -0.6098 26 1 -0.3634 0.4326 0.9321 27 1 -0.3633 0.5908 -0.8409 28 1 -0.3633 -1.0236 -0.0914 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 3.8744 -0.0764 -2.9140 32 1 2.2464 1.8568 2.0060 33 1 2.1900 5.2375 2.3380 34 1 2.1911 3.6456 3.1684 35 1 0.0618 5.4163 3.3381 36 1 -0.1478 3.6429 3.4311 37 1 -2.0754 5.7904 2.0951 38 1 -2.0090 5.3956 0.3608 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000514947592.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:58 Heat of formation + Delta-G solvation = -187.965142 kcal Electronic energy + Delta-G solvation = -25484.794579 eV Core-core repulsion = 21333.060613 eV Total energy + Delta-G solvation = -4151.733965 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.98979 -47.57233 -47.39997 -40.22742 -36.28318 -35.93530 -33.45711 -31.70302 -30.38597 -28.19755 -26.91673 -25.34085 -23.58653 -22.60862 -21.51843 -19.60662 -19.39725 -18.44228 -18.34934 -17.60202 -16.58662 -16.24567 -15.93418 -15.12120 -14.71434 -14.41435 -14.35649 -14.13357 -13.91115 -13.68038 -13.60392 -13.57932 -13.40299 -13.06661 -12.78853 -12.64093 -12.56631 -12.24963 -11.92224 -11.51081 -11.33238 -11.20723 -10.90510 -10.81625 -10.66406 -10.18997 -9.62836 -9.49007 -9.38156 -9.06334 -8.83634 -8.35493 -7.42721 -5.98624 -4.12418 2.51039 2.84769 3.09058 3.26230 3.34771 3.36172 3.84631 3.97380 4.30650 4.39060 4.62792 4.64415 4.93721 4.98061 5.07048 5.18602 5.28881 5.46927 5.63998 5.95406 6.02308 6.21572 6.41321 6.48885 6.58832 6.79882 7.09926 7.19016 7.27841 7.41218 7.61088 7.78211 7.99758 8.11954 8.27781 8.45791 8.58153 8.98489 9.55083 11.02254 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.024687 B = 0.004845 C = 0.004467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.948268 B = 5778.325111 C = 6266.787461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.103 4.103 3 C 0.211 3.789 4 H 0.046 0.954 5 C -0.549 4.549 6 H 0.054 0.946 7 C 0.069 3.931 8 N -0.880 5.880 9 Si 0.889 3.111 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.668 5.668 14 C 0.065 3.935 15 H 0.087 0.913 16 C -0.134 4.134 17 C 0.112 3.888 18 N -0.625 5.625 19 C 0.091 3.909 20 C 0.430 3.570 21 F -0.184 7.184 22 F -0.188 7.188 23 F -0.168 7.168 24 C 0.538 3.462 25 O -0.504 6.504 26 H 0.042 0.958 27 H 0.039 0.961 28 H 0.023 0.977 29 H 0.091 0.909 30 H 0.029 0.971 31 H 0.261 0.739 32 H 0.337 0.663 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.119 0.881 38 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.881 10.474 11.366 17.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.142 4.142 3 C 0.104 3.896 4 H 0.064 0.936 5 C -0.588 4.588 6 H 0.073 0.927 7 C -0.135 4.135 8 N -0.518 5.518 9 Si 0.717 3.283 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.211 1.211 13 N -0.301 5.301 14 C -0.049 4.049 15 H 0.105 0.895 16 C -0.172 4.172 17 C -0.010 4.010 18 N -0.361 5.361 19 C -0.035 4.035 20 C 0.373 3.627 21 F -0.165 7.165 22 F -0.170 7.170 23 F -0.149 7.149 24 C 0.325 3.675 25 O -0.375 6.375 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.042 0.958 29 H 0.109 0.891 30 H 0.048 0.952 31 H 0.071 0.929 32 H 0.156 0.844 33 H 0.100 0.900 34 H 0.112 0.888 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.137 0.863 38 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -9.792 10.212 10.404 17.561 hybrid contribution 1.679 -0.069 -0.068 1.682 sum -8.113 10.143 10.336 16.599 Atomic orbital electron populations 1.21660 0.98818 0.98143 1.00489 1.21472 0.92147 0.98949 1.01608 1.19332 0.92786 0.91368 0.86153 0.93647 1.21841 0.92436 1.38474 1.06074 0.92748 1.24934 0.97942 0.94978 0.95605 1.69904 1.34826 1.37624 1.09444 0.86600 0.86065 0.77727 0.77905 1.19943 1.20989 1.21055 1.60777 1.57045 1.01832 1.10464 1.21990 0.93845 0.92856 0.96206 0.89535 1.22813 0.95037 1.01638 0.97731 1.22083 0.92027 1.02058 0.84854 1.48172 1.12295 1.64191 1.11465 1.22359 0.81070 0.92746 1.07373 1.21417 0.81265 0.85621 0.74354 1.93170 1.95500 1.88870 1.38999 1.93166 1.40543 1.87876 1.95403 1.93292 1.94055 1.62286 1.65291 1.21306 0.87232 0.74524 0.84405 1.90723 1.76002 1.52707 1.18110 0.93886 0.94179 0.95801 0.89096 0.95197 0.92866 0.84389 0.90012 0.88774 0.90766 0.90526 0.86312 0.85934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.01 9.73 37.16 0.36 -2.65 16 2 C -0.10 -2.54 5.45 -26.73 -0.15 -2.68 16 3 C 0.21 5.22 1.84 -68.86 -0.13 5.10 16 4 H 0.05 1.32 7.30 -51.93 -0.38 0.94 16 5 C -0.55 -14.43 8.26 -34.44 -0.28 -14.72 16 6 H 0.05 1.38 7.75 -52.49 -0.41 0.97 16 7 C 0.07 1.87 5.29 -17.82 -0.09 1.77 16 8 N -0.88 -25.22 11.30 55.43 0.63 -24.60 16 9 Si 0.89 20.87 29.54 -169.99 -5.02 15.84 16 10 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 N -0.67 -13.26 5.58 -100.96 -0.56 -13.83 16 14 C 0.06 1.13 3.03 -67.72 -0.20 0.93 16 15 H 0.09 1.71 7.69 -51.93 -0.40 1.31 16 16 C -0.13 -1.55 6.85 -25.10 -0.17 -1.72 16 17 C 0.11 1.17 7.22 -3.13 -0.02 1.15 16 18 N -0.62 -8.42 2.81 -172.42 -0.48 -8.91 16 19 C 0.09 0.99 5.91 -4.04 -0.02 0.96 16 20 C 0.43 5.64 3.29 37.15 0.12 5.76 16 21 F -0.18 -2.43 17.09 2.25 0.04 -2.39 16 22 F -0.19 -2.29 17.32 2.25 0.04 -2.25 16 23 F -0.17 -2.92 16.96 2.25 0.04 -2.88 16 24 C 0.54 9.82 7.22 -10.86 -0.08 9.74 16 25 O -0.50 -11.37 17.11 5.56 0.10 -11.28 16 26 H 0.04 0.93 7.87 -51.93 -0.41 0.52 16 27 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.09 2.50 5.97 -51.93 -0.31 2.19 16 30 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 32 H 0.34 6.23 7.83 -39.29 -0.31 5.92 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.09 0.98 7.60 -51.93 -0.39 0.59 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.08 0.83 8.12 -51.93 -0.42 0.40 16 37 H 0.12 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.12 1.33 7.93 -51.93 -0.41 0.92 16 LS Contribution 328.33 15.07 4.95 4.95 Total: -1.00 -31.82 328.33 -6.06 -37.88 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -5.11 Total: 3.82 kcal Atomic # 6 Polarization: 4.31 SS G_CDS: -0.67 Total: 3.64 kcal Atomic # 7 Polarization: -46.91 SS G_CDS: -0.42 Total: -47.33 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: 0.10 Total: -11.28 kcal Atomic # 9 Polarization: -7.64 SS G_CDS: 0.12 Total: -7.53 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.82 -6.06 -37.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514947592.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.082 kcal (2) G-P(sol) polarization free energy of solvation -31.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds