Wall clock time and date at job start Tue Mar 31 2020 06:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46776 * 2 1 4 4 H 1.09003 * 109.46868 * 304.05899 * 3 2 1 5 5 C 1.50701 * 109.46902 * 184.06348 * 3 2 1 6 6 H 1.08000 * 120.00191 * 240.00189 * 5 3 2 7 7 C 1.37873 * 120.00211 * 59.99624 * 5 3 2 8 8 N 1.31517 * 120.00017 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 120.00391 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.46693 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47065 * 120.00156 * 9 7 5 12 12 H 1.48497 * 109.47240 * 240.00278 * 9 7 5 13 13 N 1.46901 * 109.47307 * 64.06377 * 3 2 1 14 14 C 1.46892 * 110.99761 * 204.17719 * 13 3 2 15 15 H 1.09000 * 110.54151 * 324.21552 * 14 13 3 16 16 C 1.54632 * 110.48846 * 201.60035 * 14 13 3 17 17 C 1.54475 * 101.76682 * 266.12159 * 16 14 13 18 18 N 1.46757 * 105.47408 * 334.58104 * 17 16 14 19 19 C 1.46506 * 124.35162 * 197.03481 * 18 17 16 20 20 C 1.52990 * 109.47303 * 270.00196 * 19 18 17 21 21 F 1.39905 * 109.47501 * 60.00113 * 20 19 18 22 22 F 1.39901 * 109.47230 * 179.97438 * 20 19 18 23 23 F 1.39899 * 109.47488 * 299.99851 * 20 19 18 24 24 C 1.34421 * 111.30350 * 17.01725 * 18 17 16 25 25 O 1.21282 * 124.94507 * 179.32754 * 24 18 17 26 26 H 1.08995 * 109.47473 * 294.89499 * 1 2 3 27 27 H 1.09001 * 109.46996 * 54.90528 * 1 2 3 28 28 H 1.09001 * 109.46916 * 174.89946 * 1 2 3 29 29 H 1.08997 * 109.47499 * 239.99558 * 2 1 3 30 30 H 1.09001 * 109.46888 * 119.99422 * 2 1 3 31 31 H 0.97000 * 120.00536 * 179.97438 * 8 7 5 32 32 H 1.00898 * 111.00123 * 80.22058 * 13 3 2 33 33 H 1.09003 * 110.96855 * 147.99707 * 16 14 13 34 34 H 1.09003 * 110.96345 * 24.24034 * 16 14 13 35 35 H 1.09004 * 110.24558 * 215.57744 * 17 16 14 36 36 H 1.09004 * 110.32075 * 93.61755 * 17 16 14 37 37 H 1.09004 * 109.46803 * 30.00638 * 19 18 17 38 38 H 1.08999 * 109.47065 * 149.99669 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6184 1.9769 -0.8514 5 6 3.5436 1.4438 -0.1007 6 1 4.1369 1.8926 0.6822 7 6 4.1619 0.8719 -1.1922 8 7 3.4395 0.3257 -2.1459 9 14 6.0257 0.8740 -1.3174 10 1 6.6011 1.5456 -0.1244 11 1 6.5190 -0.5251 -1.3833 12 1 6.4387 1.6027 -2.5436 13 7 1.6320 2.1061 1.2455 14 6 1.5747 3.5635 1.0710 15 1 2.3658 3.8999 0.4008 16 6 1.6843 4.2771 2.4385 17 6 0.1982 4.4711 2.8126 18 7 -0.5274 4.4899 1.5370 19 6 -1.8910 4.9986 1.3691 20 6 -2.8904 3.8614 1.5897 21 9 -2.7389 3.3519 2.8839 22 9 -4.1925 4.3473 1.4299 23 9 -2.6537 2.8451 0.6579 24 6 0.2200 3.9808 0.5425 25 8 -0.1411 3.8675 -0.6098 26 1 -0.3634 0.4326 0.9321 27 1 -0.3633 0.5908 -0.8409 28 1 -0.3633 -1.0236 -0.0914 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 3.8744 -0.0764 -2.9140 32 1 2.2464 1.8568 2.0060 33 1 2.1900 5.2375 2.3380 34 1 2.1911 3.6456 3.1684 35 1 0.0618 5.4163 3.3381 36 1 -0.1478 3.6429 3.4311 37 1 -2.0754 5.7904 2.0951 38 1 -2.0090 5.3956 0.3608 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000514947592.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:57 Heat of formation + Delta-G solvation = -210.069044 kcal Electronic energy + Delta-G solvation = -25485.753076 eV Core-core repulsion = 21333.060613 eV Total energy + Delta-G solvation = -4152.692462 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -51.06096 -48.59764 -48.55872 -41.49019 -37.90937 -37.40870 -34.93527 -33.56382 -31.90940 -29.34338 -28.53014 -26.95171 -24.77698 -24.36709 -22.66023 -21.43862 -20.71412 -19.51733 -19.43943 -18.75100 -18.57335 -17.44551 -17.21796 -16.62649 -16.34950 -15.57418 -15.49545 -15.42702 -15.35193 -15.00035 -14.80822 -14.73080 -14.70698 -14.56889 -14.37527 -14.14275 -13.56030 -13.34872 -13.31397 -13.24568 -13.06210 -12.87195 -12.63590 -12.34084 -12.23373 -11.97913 -11.56200 -11.35799 -11.04245 -10.88212 -10.44837 -9.95106 -9.15092 -8.04248 -6.27314 1.32088 1.40095 1.41678 1.52258 1.75970 1.93643 2.41595 2.85557 3.01950 3.17162 3.28634 3.49383 3.57459 3.80187 4.05718 4.15326 4.25055 4.43510 4.54970 4.66304 4.70072 4.80673 4.87253 5.07124 5.13672 5.19309 5.33944 5.42601 5.48346 5.59457 5.76375 5.91003 6.08369 6.13663 6.30337 6.79453 7.00903 7.12867 7.44871 8.94410 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.024687 B = 0.004845 C = 0.004467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.948268 B = 5778.325111 C = 6266.787461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.099 4.099 3 C 0.223 3.777 4 H -0.007 1.007 5 C -0.555 4.555 6 H 0.064 0.936 7 C 0.013 3.987 8 N -0.917 5.917 9 Si 0.957 3.043 10 H -0.260 1.260 11 H -0.282 1.282 12 H -0.287 1.287 13 N -0.660 5.660 14 C 0.053 3.947 15 H 0.053 0.947 16 C -0.119 4.119 17 C 0.109 3.891 18 N -0.615 5.615 19 C 0.090 3.910 20 C 0.426 3.574 21 F -0.182 7.182 22 F -0.182 7.182 23 F -0.200 7.200 24 C 0.528 3.472 25 O -0.563 6.563 26 H 0.051 0.949 27 H 0.012 0.988 28 H 0.044 0.956 29 H 0.059 0.941 30 H 0.038 0.962 31 H 0.260 0.740 32 H 0.347 0.653 33 H 0.107 0.893 34 H 0.111 0.889 35 H 0.125 0.875 36 H 0.079 0.921 37 H 0.176 0.824 38 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.528 12.066 14.514 20.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.138 4.138 3 C 0.114 3.886 4 H 0.011 0.989 5 C -0.594 4.594 6 H 0.082 0.918 7 C -0.186 4.186 8 N -0.556 5.556 9 Si 0.783 3.217 10 H -0.184 1.184 11 H -0.208 1.208 12 H -0.214 1.214 13 N -0.294 5.294 14 C -0.061 4.061 15 H 0.071 0.929 16 C -0.156 4.156 17 C -0.012 4.012 18 N -0.349 5.349 19 C -0.035 4.035 20 C 0.371 3.629 21 F -0.164 7.164 22 F -0.164 7.164 23 F -0.182 7.182 24 C 0.316 3.684 25 O -0.439 6.439 26 H 0.070 0.930 27 H 0.032 0.968 28 H 0.063 0.937 29 H 0.077 0.923 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.167 0.833 33 H 0.125 0.875 34 H 0.130 0.870 35 H 0.143 0.857 36 H 0.097 0.903 37 H 0.193 0.807 38 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -9.451 11.830 13.636 20.377 hybrid contribution 1.483 -0.522 -1.002 1.864 sum -7.969 11.308 12.634 18.735 Atomic orbital electron populations 1.21472 0.97296 0.98938 0.99686 1.21340 0.93409 0.98714 1.00344 1.18943 0.91905 0.91145 0.86592 0.98897 1.22191 0.93377 1.37684 1.06130 0.91831 1.25788 1.02604 0.94825 0.95393 1.70074 1.36706 1.38762 1.10078 0.85527 0.80469 0.77667 0.78044 1.18384 1.20770 1.21372 1.60567 1.56745 1.03615 1.08458 1.22069 0.92922 0.91548 0.99511 0.92885 1.22851 0.96695 1.02253 0.93847 1.22422 0.90407 1.04960 0.83384 1.48167 1.13024 1.62324 1.11384 1.22716 0.78794 0.92736 1.09234 1.21769 0.82083 0.85376 0.73721 1.93169 1.95535 1.88986 1.38712 1.93176 1.40226 1.87606 1.95350 1.93237 1.94318 1.63979 1.66637 1.21456 0.88131 0.74456 0.84348 1.90686 1.77236 1.55267 1.20736 0.93020 0.96849 0.93737 0.92294 0.94302 0.93077 0.83279 0.87459 0.87047 0.85661 0.90279 0.80675 0.86249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.37 9.73 71.98 0.70 -4.67 16 2 C -0.10 -5.04 5.45 30.60 0.17 -4.87 16 3 C 0.22 11.45 1.84 44.17 0.08 11.53 16 4 H -0.01 -0.43 7.30 -2.39 -0.02 -0.45 16 5 C -0.55 -29.67 8.26 25.60 0.21 -29.46 16 6 H 0.06 3.20 7.75 -2.91 -0.02 3.18 16 7 C 0.01 0.75 5.29 84.65 0.45 1.19 16 8 N -0.92 -54.66 11.30 21.45 0.24 -54.42 16 9 Si 0.96 43.28 29.54 68.60 2.03 45.31 16 10 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 11 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 12 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 13 N -0.66 -26.30 5.58 -473.34 -2.64 -28.94 16 14 C 0.05 1.86 3.03 44.91 0.14 1.99 16 15 H 0.05 2.18 7.69 -2.39 -0.02 2.17 16 16 C -0.12 -2.33 6.85 31.65 0.22 -2.11 16 17 C 0.11 1.79 7.22 86.83 0.63 2.41 16 18 N -0.61 -15.17 2.81 -817.99 -2.30 -17.46 16 19 C 0.09 1.72 5.91 86.37 0.51 2.23 16 20 C 0.43 10.50 3.29 71.98 0.24 10.74 16 21 F -0.18 -4.37 17.09 44.97 0.77 -3.60 16 22 F -0.18 -4.12 17.32 44.97 0.78 -3.34 16 23 F -0.20 -7.06 16.96 44.97 0.76 -6.30 16 24 C 0.53 19.46 7.22 87.90 0.63 20.10 16 25 O -0.56 -26.85 17.11 -3.03 -0.05 -26.90 16 26 H 0.05 2.25 7.87 -2.39 -0.02 2.23 16 27 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.06 3.38 5.97 -2.39 -0.01 3.37 16 30 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 32 H 0.35 12.41 7.83 -89.70 -0.70 11.71 16 33 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.11 1.85 7.60 -2.39 -0.02 1.84 16 35 H 0.13 0.93 8.14 -2.38 -0.02 0.91 16 36 H 0.08 1.34 8.12 -2.38 -0.02 1.32 16 37 H 0.18 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.12 2.43 7.93 -2.39 -0.02 2.41 16 Total: -1.00 -75.16 328.33 3.94 -71.22 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: 0.38 Total: 15.35 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: 3.97 Total: 9.08 kcal Atomic # 7 Polarization: -96.13 SS G_CDS: -4.70 Total: -100.83 kcal Atomic # 8 Polarization: -26.85 SS G_CDS: -0.05 Total: -26.90 kcal Atomic # 9 Polarization: -15.55 SS G_CDS: 2.31 Total: -13.24 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -75.16 3.94 -71.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514947592.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.845 kcal (2) G-P(sol) polarization free energy of solvation -75.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds