Wall clock time and date at job start Tue Mar 31 2020 06:35:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00339 * 2 1 3 5 5 N 1.29411 * 125.69255 * 300.02540 * 4 2 1 6 6 N 1.26401 * 116.47610 * 179.97438 * 5 4 2 7 7 C 1.29411 * 116.47384 * 359.97438 * 6 5 4 8 8 C 1.50705 * 125.69826 * 179.97438 * 7 6 5 9 9 N 1.46903 * 109.47149 * 90.02341 * 8 7 6 10 10 C 1.46898 * 110.99610 * 180.02562 * 9 8 7 11 11 C 1.52999 * 109.46850 * 179.97438 * 10 9 8 12 12 H 1.09004 * 109.46934 * 54.99775 * 11 10 9 13 13 C 1.47193 * 109.47419 * 295.00290 * 11 10 9 14 14 N 8.67400 * 82.88945 * 129.36877 * 2 1 3 15 15 C 1.52995 * 109.47174 * 174.99486 * 11 10 9 16 16 C 1.50704 * 109.47272 * 184.99817 * 15 11 10 17 17 H 1.08001 * 119.99986 * 0.02562 * 16 15 11 18 18 C 1.37873 * 120.00083 * 180.02562 * 16 15 11 19 19 N 1.31519 * 120.00114 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 120.00173 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.46883 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46904 * 120.00162 * 20 18 16 23 23 H 1.48497 * 109.47036 * 240.00352 * 20 18 16 24 24 S 1.71216 * 125.69766 * 119.71477 * 4 2 1 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 29 29 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 31 31 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 32 32 H 1.09001 * 109.46968 * 210.02328 * 8 7 6 33 33 H 1.08998 * 109.46717 * 330.02261 * 8 7 6 34 34 H 1.00906 * 110.99551 * 303.95386 * 9 8 7 35 35 H 1.08994 * 109.47040 * 299.99697 * 10 9 8 36 36 H 1.08996 * 109.47460 * 59.99979 * 10 9 8 37 37 H 1.08993 * 109.47701 * 305.00228 * 15 11 10 38 38 H 1.09004 * 109.47006 * 65.00510 * 15 11 10 39 39 H 0.96996 * 119.99969 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2305 5 7 1.7882 -0.3661 2.4538 6 7 2.2992 -1.0895 3.3556 7 6 3.0094 -2.0946 2.9554 8 6 3.7108 -3.0864 3.8475 9 7 2.8078 -4.2083 4.1373 10 6 3.4590 -5.1970 5.0069 11 6 2.4897 -6.3473 5.2864 12 1 2.1379 -6.7635 4.3424 13 6 1.3419 -5.8451 6.0591 14 7 0.4563 -5.4597 6.6541 15 6 3.2071 -7.4355 6.0877 16 6 2.2915 -8.6204 6.2575 17 1 1.2975 -8.5996 5.8357 18 6 2.7228 -9.7310 6.9513 19 7 3.9331 -9.7562 7.4654 20 14 1.5881 -11.2001 7.1612 21 1 0.2910 -10.9229 6.4935 22 1 2.2133 -12.3998 6.5487 23 1 1.3584 -11.4454 8.6076 24 16 3.0152 -2.1124 1.2433 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9562 0.8900 32 1 4.6035 -3.4590 3.3451 33 1 3.9952 -2.5987 4.7798 34 1 1.9444 -3.8816 4.5448 35 1 4.3502 -5.5842 4.5131 36 1 3.7414 -4.7237 5.9473 37 1 4.1068 -7.7448 5.5559 38 1 3.4806 -7.0444 7.0677 39 1 4.2363 -10.5374 7.9538 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569778017.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:11 Heat of formation + Delta-G solvation = 65.321572 kcal Electronic energy + Delta-G solvation = -19932.652307 eV Core-core repulsion = 16808.804040 eV Total energy + Delta-G solvation = -3123.848267 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.121 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.50412 -37.68406 -36.37883 -35.38290 -33.73250 -32.17387 -30.59971 -28.04175 -27.58733 -26.36091 -24.68375 -22.83016 -22.42812 -21.80162 -19.59259 -19.15911 -16.83170 -16.69263 -16.11700 -16.02479 -15.83116 -14.85596 -14.79338 -14.34478 -13.95727 -13.72923 -13.49114 -13.30504 -12.91430 -12.67160 -12.55440 -12.41435 -12.17126 -12.03380 -11.70999 -11.69954 -11.57190 -11.30900 -11.07871 -10.79769 -10.61378 -10.53588 -10.34849 -10.27772 -9.93779 -9.86984 -9.57645 -9.25568 -8.59402 -8.48159 -6.12444 -4.15530 0.22524 0.71571 1.20323 2.36996 3.26952 3.35348 3.39955 3.53610 3.59806 3.63576 4.04242 4.34455 4.37730 4.41426 4.61327 4.73077 4.74127 4.79469 5.14638 5.23855 5.24763 5.25884 5.34430 5.41210 5.43980 5.46612 5.54395 5.62858 5.80668 5.88538 6.02856 6.23302 6.47274 6.80599 7.16869 7.39129 7.48769 7.82835 8.19727 8.36980 8.39093 8.89196 9.50257 10.98455 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.032525 B = 0.002567 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.667691 B =10904.540224 C =11073.588599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.011 4.011 3 C -0.141 4.141 4 C -0.022 4.022 5 N -0.257 5.257 6 N -0.258 5.258 7 C -0.011 4.011 8 C 0.136 3.864 9 N -0.687 5.687 10 C 0.067 3.933 11 C 0.008 3.992 12 H 0.112 0.888 13 C 0.237 3.763 14 N -0.472 5.472 15 C 0.032 3.968 16 C -0.526 4.526 17 H 0.057 0.943 18 C 0.062 3.938 19 N -0.891 5.891 20 Si 0.892 3.108 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.284 1.284 24 S 0.192 5.808 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.058 0.942 28 H 0.092 0.908 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.102 0.898 33 H 0.068 0.932 34 H 0.346 0.654 35 H 0.097 0.903 36 H 0.042 0.958 37 H 0.041 0.959 38 H 0.025 0.975 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.161 18.398 -18.229 25.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.033 4.033 3 C -0.200 4.200 4 C -0.301 4.301 5 N -0.094 5.094 6 N -0.097 5.097 7 C -0.290 4.290 8 C 0.004 3.996 9 N -0.320 5.320 10 C -0.062 4.062 11 C -0.014 4.014 12 H 0.130 0.870 13 C -0.080 4.080 14 N -0.148 5.148 15 C -0.006 4.006 16 C -0.564 4.564 17 H 0.076 0.924 18 C -0.140 4.140 19 N -0.530 5.530 20 Si 0.719 3.281 21 H -0.197 1.197 22 H -0.208 1.208 23 H -0.210 1.210 24 S 0.438 5.562 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.077 0.923 28 H 0.110 0.890 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.120 0.880 33 H 0.086 0.914 34 H 0.165 0.835 35 H 0.115 0.885 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.044 0.956 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.971 18.713 -17.529 25.659 hybrid contribution -0.308 -0.658 0.997 1.234 sum 0.663 18.055 -16.531 24.489 Atomic orbital electron populations 1.21838 0.92487 1.02716 1.03111 1.19758 0.97142 0.96028 0.90396 1.21826 1.01207 0.93855 1.03136 1.29301 1.02297 0.99148 0.99383 1.71361 1.18555 1.23218 0.96295 1.71491 1.08248 1.02961 1.26976 1.29115 1.02684 1.00211 0.96987 1.20392 0.94539 0.88131 0.96559 1.60671 1.07242 1.13174 1.50904 1.22141 0.97615 0.91587 0.94890 1.19319 0.87957 0.95577 0.98561 0.87032 1.29233 0.94028 0.91715 0.92980 1.80987 1.11857 1.11231 1.10763 1.19173 0.95829 0.90624 0.95004 1.21172 1.00176 0.99990 1.35075 0.92441 1.24954 0.95117 0.98658 0.95267 1.69944 1.17140 1.29901 1.36018 0.86532 0.81035 0.82550 0.77954 1.19684 1.20801 1.20983 1.83705 1.44577 1.23321 1.04610 0.91284 0.91339 0.92271 0.88976 0.92444 0.91287 0.91356 0.87998 0.91388 0.83533 0.88503 0.94007 0.94094 0.95641 0.92824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 9.18 37.16 0.34 -0.65 16 2 C -0.01 -0.07 3.37 -91.77 -0.31 -0.38 16 3 C -0.14 -0.88 9.17 37.15 0.34 -0.54 16 4 C -0.02 -0.23 6.04 -13.30 -0.08 -0.31 16 5 N -0.26 -3.45 11.66 32.58 0.38 -3.07 16 6 N -0.26 -3.70 11.66 32.58 0.38 -3.32 16 7 C -0.01 -0.13 7.04 -13.30 -0.09 -0.22 16 8 C 0.14 1.46 6.28 -4.97 -0.03 1.43 16 9 N -0.69 -8.81 6.49 -115.06 -0.75 -9.56 16 10 C 0.07 0.92 5.12 -3.83 -0.02 0.90 16 11 C 0.01 0.14 2.42 -93.41 -0.23 -0.09 16 12 H 0.11 1.90 8.14 -51.93 -0.42 1.47 16 13 C 0.24 4.80 12.97 -20.81 -0.27 4.53 16 14 N -0.47 -10.44 18.53 42.09 0.78 -9.66 16 15 C 0.03 0.73 4.42 -27.88 -0.12 0.60 16 16 C -0.53 -13.83 8.60 -34.44 -0.30 -14.12 16 17 H 0.06 1.52 7.59 -52.49 -0.40 1.12 16 18 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 19 N -0.89 -25.23 13.29 55.43 0.74 -24.50 16 20 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 21 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 24 S 0.19 1.78 23.04 -107.50 -2.48 -0.70 16 25 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 26 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.35 5.03 7.80 -39.29 -0.31 4.72 16 35 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.26 7.04 8.31 -40.82 -0.34 6.71 16 LS Contribution 353.26 15.07 5.32 5.32 Total: -1.00 -31.50 353.26 -7.27 -38.77 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: -5.76 Total: -2.21 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: -0.86 Total: -7.25 kcal Atomic # 7 Polarization: -51.64 SS G_CDS: 1.53 Total: -50.11 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: 1.78 SS G_CDS: -2.48 Total: -0.70 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.50 -7.27 -38.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569778017.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.089 kcal (2) G-P(sol) polarization free energy of solvation -31.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds