Wall clock time and date at job start Tue Mar 31 2020 06:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00339 * 2 1 3 5 5 N 1.29411 * 125.69255 * 300.02540 * 4 2 1 6 6 N 1.26401 * 116.47610 * 179.97438 * 5 4 2 7 7 C 1.29411 * 116.47384 * 359.97438 * 6 5 4 8 8 C 1.50705 * 125.69826 * 179.97438 * 7 6 5 9 9 N 1.46903 * 109.47149 * 90.02341 * 8 7 6 10 10 C 1.46898 * 110.99610 * 180.02562 * 9 8 7 11 11 C 1.52999 * 109.46850 * 179.97438 * 10 9 8 12 12 H 1.09004 * 109.46934 * 54.99775 * 11 10 9 13 13 C 1.47193 * 109.47419 * 295.00290 * 11 10 9 14 14 N 8.67400 * 82.88945 * 129.36877 * 2 1 3 15 15 C 1.52995 * 109.47174 * 174.99486 * 11 10 9 16 16 C 1.50704 * 109.47272 * 184.99817 * 15 11 10 17 17 H 1.08001 * 119.99986 * 0.02562 * 16 15 11 18 18 C 1.37873 * 120.00083 * 180.02562 * 16 15 11 19 19 N 1.31519 * 120.00114 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 120.00173 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.46883 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46904 * 120.00162 * 20 18 16 23 23 H 1.48497 * 109.47036 * 240.00352 * 20 18 16 24 24 S 1.71216 * 125.69766 * 119.71477 * 4 2 1 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 29 29 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 31 31 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 32 32 H 1.09001 * 109.46968 * 210.02328 * 8 7 6 33 33 H 1.08998 * 109.46717 * 330.02261 * 8 7 6 34 34 H 1.00906 * 110.99551 * 303.95386 * 9 8 7 35 35 H 1.08994 * 109.47040 * 299.99697 * 10 9 8 36 36 H 1.08996 * 109.47460 * 59.99979 * 10 9 8 37 37 H 1.08993 * 109.47701 * 305.00228 * 15 11 10 38 38 H 1.09004 * 109.47006 * 65.00510 * 15 11 10 39 39 H 0.96996 * 119.99969 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2305 5 7 1.7882 -0.3661 2.4538 6 7 2.2992 -1.0895 3.3556 7 6 3.0094 -2.0946 2.9554 8 6 3.7108 -3.0864 3.8475 9 7 2.8078 -4.2083 4.1373 10 6 3.4590 -5.1970 5.0069 11 6 2.4897 -6.3473 5.2864 12 1 2.1379 -6.7635 4.3424 13 6 1.3419 -5.8451 6.0591 14 7 0.4563 -5.4597 6.6541 15 6 3.2071 -7.4355 6.0877 16 6 2.2915 -8.6204 6.2575 17 1 1.2975 -8.5996 5.8357 18 6 2.7228 -9.7310 6.9513 19 7 3.9331 -9.7562 7.4654 20 14 1.5881 -11.2001 7.1612 21 1 0.2910 -10.9229 6.4935 22 1 2.2133 -12.3998 6.5487 23 1 1.3584 -11.4454 8.6076 24 16 3.0152 -2.1124 1.2433 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9562 0.8900 32 1 4.6035 -3.4590 3.3451 33 1 3.9952 -2.5987 4.7798 34 1 1.9444 -3.8816 4.5448 35 1 4.3502 -5.5842 4.5131 36 1 3.7414 -4.7237 5.9473 37 1 4.1068 -7.7448 5.5559 38 1 3.4806 -7.0444 7.0677 39 1 4.2363 -10.5374 7.9538 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000569778017.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:10 Heat of formation + Delta-G solvation = 44.452470 kcal Electronic energy + Delta-G solvation = -19933.557259 eV Core-core repulsion = 16808.804040 eV Total energy + Delta-G solvation = -3124.753219 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.121 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.37145 -39.01332 -37.21735 -36.53159 -35.49272 -33.73512 -31.73853 -29.19274 -28.09346 -27.72291 -25.77964 -24.05186 -23.59111 -23.11294 -20.41004 -19.93254 -18.56439 -18.26856 -17.17893 -16.96487 -16.69282 -16.53982 -15.59691 -15.46266 -14.94474 -14.87735 -14.59725 -14.30865 -14.24108 -14.01836 -13.89097 -13.41139 -13.35880 -13.08468 -13.06998 -12.74509 -12.57540 -12.50022 -12.35019 -12.22926 -12.14133 -11.99081 -11.47650 -11.38107 -11.17334 -11.09382 -10.72084 -10.62965 -10.54897 -9.60061 -8.19551 -6.26982 -0.57164 -0.04363 0.39001 1.38727 1.42249 1.48870 1.52182 1.92988 1.95436 2.41423 2.83013 3.15780 3.16889 3.24130 3.51813 3.78844 3.96968 4.08602 4.14128 4.14483 4.40242 4.48587 4.54750 4.61349 4.72477 4.77234 4.88128 4.90696 4.94603 4.95962 5.05651 5.29782 5.35288 5.48760 5.62798 5.76764 5.81541 6.04406 6.21152 6.73695 6.87883 7.41515 7.54429 8.91384 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.032525 B = 0.002567 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.667691 B =10904.540224 C =11073.588599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.014 4.014 3 C -0.138 4.138 4 C -0.025 4.025 5 N -0.294 5.294 6 N -0.297 5.297 7 C -0.030 4.030 8 C 0.137 3.863 9 N -0.686 5.686 10 C 0.078 3.922 11 C 0.019 3.981 12 H 0.126 0.874 13 C 0.249 3.751 14 N -0.509 5.509 15 C 0.038 3.962 16 C -0.538 4.538 17 H 0.052 0.948 18 C 0.012 3.988 19 N -0.922 5.922 20 Si 0.946 3.054 21 H -0.271 1.271 22 H -0.272 1.272 23 H -0.286 1.286 24 S 0.253 5.747 25 H 0.093 0.907 26 H 0.046 0.954 27 H 0.052 0.948 28 H 0.120 0.880 29 H 0.058 0.942 30 H 0.092 0.908 31 H 0.047 0.953 32 H 0.131 0.869 33 H 0.066 0.934 34 H 0.334 0.666 35 H 0.123 0.877 36 H 0.040 0.960 37 H 0.043 0.957 38 H 0.001 0.999 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.705 18.361 -20.657 27.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.036 4.036 3 C -0.197 4.197 4 C -0.304 4.304 5 N -0.131 5.131 6 N -0.136 5.136 7 C -0.310 4.310 8 C 0.005 3.995 9 N -0.317 5.317 10 C -0.051 4.051 11 C -0.003 4.003 12 H 0.144 0.856 13 C -0.067 4.067 14 N -0.186 5.186 15 C 0.000 4.000 16 C -0.576 4.576 17 H 0.070 0.930 18 C -0.187 4.187 19 N -0.562 5.562 20 Si 0.772 3.228 21 H -0.196 1.196 22 H -0.197 1.197 23 H -0.213 1.213 24 S 0.499 5.501 25 H 0.112 0.888 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.138 0.862 29 H 0.077 0.923 30 H 0.111 0.889 31 H 0.066 0.934 32 H 0.149 0.851 33 H 0.084 0.916 34 H 0.151 0.849 35 H 0.141 0.859 36 H 0.059 0.941 37 H 0.062 0.938 38 H 0.020 0.980 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.521 18.679 -19.972 27.388 hybrid contribution -0.477 -0.619 1.676 1.849 sum 1.045 18.060 -18.296 25.729 Atomic orbital electron populations 1.21832 0.92462 1.02375 1.03304 1.20029 0.97155 0.96531 0.89909 1.21814 1.01290 0.93308 1.03297 1.29902 1.01531 0.99499 0.99499 1.71325 1.20038 1.24323 0.97448 1.71450 1.09506 1.04206 1.28409 1.29278 1.02666 1.00030 0.98993 1.20523 0.94756 0.87317 0.96904 1.60658 1.07104 1.13882 1.50076 1.22022 0.97045 0.90500 0.95579 1.19282 0.87444 0.95913 0.97681 0.85640 1.29743 0.93883 0.90771 0.92338 1.80987 1.13180 1.12628 1.11829 1.18998 0.95680 0.90806 0.94547 1.21580 1.00435 1.01228 1.34359 0.92994 1.25679 0.96375 1.01243 0.95413 1.70025 1.18469 1.30710 1.36987 0.85676 0.79410 0.80094 0.77578 1.19583 1.19684 1.21270 1.83392 1.43115 1.21769 1.01825 0.88785 0.93448 0.92861 0.86206 0.92267 0.88902 0.93402 0.85085 0.91559 0.84883 0.85873 0.94140 0.93833 0.98023 0.92716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.18 71.98 0.66 -1.10 16 2 C -0.01 -0.17 3.37 -11.54 -0.04 -0.21 16 3 C -0.14 -1.50 9.17 71.98 0.66 -0.84 16 4 C -0.03 -0.49 6.04 88.47 0.53 0.04 16 5 N -0.29 -7.94 11.66 -50.85 -0.59 -8.53 16 6 N -0.30 -8.56 11.66 -50.84 -0.59 -9.16 16 7 C -0.03 -0.69 7.04 88.47 0.62 -0.06 16 8 C 0.14 2.70 6.28 85.56 0.54 3.23 16 9 N -0.69 -16.44 6.49 -517.94 -3.36 -19.80 16 10 C 0.08 1.99 5.12 86.30 0.44 2.44 16 11 C 0.02 0.64 2.42 -12.60 -0.03 0.61 16 12 H 0.13 4.02 8.14 -2.39 -0.02 4.00 16 13 C 0.25 9.99 12.97 89.46 1.16 11.15 16 14 N -0.51 -22.64 18.53 19.99 0.37 -22.27 16 15 C 0.04 1.71 4.42 29.85 0.13 1.84 16 16 C -0.54 -28.07 8.60 25.60 0.22 -27.85 16 17 H 0.05 2.71 7.59 -2.91 -0.02 2.69 16 18 C 0.01 0.64 5.46 84.65 0.46 1.11 16 19 N -0.92 -52.16 13.29 21.45 0.28 -51.88 16 20 Si 0.95 43.22 29.54 68.60 2.03 45.25 16 21 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 22 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 23 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 24 S 0.25 4.12 23.04 -56.49 -1.30 2.82 16 25 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 28 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.13 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.33 9.49 7.80 -89.69 -0.70 8.79 16 35 H 0.12 2.55 8.14 -2.39 -0.02 2.53 16 36 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.00 0.07 8.14 -2.38 -0.02 0.05 16 39 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 Total: -1.00 -68.63 353.26 2.55 -66.08 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: 0.36 Total: 7.13 kcal Atomic # 6 Polarization: -15.01 SS G_CDS: 5.36 Total: -9.64 kcal Atomic # 7 Polarization: -107.74 SS G_CDS: -3.89 Total: -111.63 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Atomic # 16 Polarization: 4.12 SS G_CDS: -1.30 Total: 2.82 kcal Total: -68.63 2.55 -66.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569778017.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.527 kcal (2) G-P(sol) polarization free energy of solvation -68.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds