Wall clock time and date at job start Tue Mar 31 2020 07:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.47304 * 2 1 4 4 C 1.46496 * 119.99880 * 270.00471 * 3 2 1 5 5 C 1.50703 * 109.47077 * 269.99336 * 4 3 2 6 6 H 1.08005 * 119.99703 * 0.02562 * 5 4 3 7 7 C 1.37872 * 120.00292 * 180.02562 * 5 4 3 8 8 N 1.31518 * 119.99761 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00272 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47148 * 89.99653 * 9 7 5 11 11 H 1.48496 * 109.47010 * 210.00013 * 9 7 5 12 12 H 1.48497 * 109.46708 * 330.00096 * 9 7 5 13 13 C 1.34777 * 119.99854 * 89.99731 * 3 2 1 14 14 O 1.21274 * 120.00135 * 180.27973 * 13 3 2 15 15 C 1.50706 * 119.99766 * 0.02562 * 13 3 2 16 16 N 1.46902 * 109.46577 * 179.97438 * 15 13 3 17 17 C 1.47480 * 111.00244 * 74.02923 * 16 15 13 18 18 C 1.53516 * 87.92926 * 138.69954 * 17 16 15 19 19 C 1.53005 * 114.34304 * 220.31497 * 18 17 16 20 20 F 1.39894 * 109.46911 * 153.92785 * 19 18 17 21 21 F 1.39900 * 109.46864 * 273.92912 * 19 18 17 22 22 F 1.39899 * 109.46983 * 33.92708 * 19 18 17 23 23 C 1.47485 * 110.99842 * 170.00232 * 16 15 13 24 24 H 1.09007 * 109.46888 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47070 * 299.99586 * 1 2 3 26 26 H 1.08996 * 109.47306 * 59.99842 * 1 2 3 27 27 H 1.09001 * 109.46783 * 240.00151 * 2 1 3 28 28 H 1.08996 * 109.47306 * 120.00158 * 2 1 3 29 29 H 1.08997 * 109.47682 * 29.99532 * 4 3 2 30 30 H 1.09004 * 109.47271 * 149.99629 * 4 3 2 31 31 H 0.96999 * 119.99754 * 180.02562 * 8 7 5 32 32 H 1.09000 * 109.47161 * 299.99737 * 15 13 3 33 33 H 1.09001 * 109.46740 * 59.99879 * 15 13 3 34 34 H 1.08988 * 113.47550 * 253.46710 * 17 16 15 35 35 H 1.09000 * 113.47109 * 23.93480 * 17 16 15 36 36 H 1.09000 * 114.17144 * 87.62419 * 18 17 16 37 37 H 1.09005 * 113.46968 * 336.06160 * 23 16 15 38 38 H 1.08999 * 113.47666 * 106.46271 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8351 -1.7038 6 1 4.3427 1.2303 -1.0961 7 6 4.1494 2.3905 -2.8774 8 7 3.3493 3.1266 -3.6176 9 14 5.9134 2.0965 -3.4171 10 1 5.9761 0.8760 -4.2606 11 1 6.3929 3.2641 -4.1993 12 1 6.7735 1.9156 -2.2201 13 6 2.2430 2.0166 1.1672 14 8 2.6424 3.1616 1.1673 15 6 1.9922 1.3059 2.4723 16 7 2.3109 2.2058 3.5889 17 6 1.2735 3.2423 3.7450 18 6 1.3825 3.0438 5.2633 19 6 0.0421 3.0702 6.0007 20 9 0.1450 2.3278 7.1819 21 9 -0.2947 4.3926 6.3088 22 9 -0.9496 2.5143 5.1853 23 6 1.8569 1.6374 4.8718 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.5817 1.6878 -2.0284 30 1 2.0955 3.1411 -1.1384 31 1 3.6753 3.5170 -4.4435 32 1 0.9444 1.0114 2.5302 33 1 2.6228 0.4186 2.5298 34 1 1.5928 4.2298 3.4121 35 1 0.3051 2.9521 3.3375 36 1 2.1478 3.6565 5.7397 37 1 1.0441 0.9189 4.7650 38 1 2.6707 1.2638 5.4934 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000574268791.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:43:55 Heat of formation + Delta-G solvation = -147.282154 kcal Electronic energy + Delta-G solvation = -24436.814206 eV Core-core repulsion = 20286.844388 eV Total energy + Delta-G solvation = -4149.969818 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.32241 -47.84026 -47.79200 -40.56040 -38.58192 -35.27783 -32.88289 -31.70428 -30.12136 -28.08069 -26.46009 -26.27232 -23.87932 -23.04092 -22.14864 -20.43807 -18.81696 -18.63757 -18.48967 -17.65632 -16.70211 -16.38056 -15.96912 -15.47229 -14.94814 -14.72108 -14.58399 -14.43594 -14.24888 -14.11739 -13.98020 -13.93204 -13.80024 -13.41264 -12.96190 -12.85159 -12.64498 -12.11765 -11.99324 -11.77901 -11.56096 -11.30888 -11.19863 -11.02407 -10.91331 -10.74798 -10.52654 -10.13070 -9.63628 -9.20721 -8.79609 -8.43687 -7.68212 -6.04544 -4.09181 2.47326 3.30003 3.33047 3.37024 3.37291 3.40903 3.43676 3.72842 3.80736 4.10563 4.38619 4.45038 4.61392 4.78673 4.85583 5.07190 5.16449 5.23156 5.29819 5.31260 5.43611 5.54578 5.58949 5.70113 5.77386 5.97329 6.06807 6.19062 6.42572 6.65809 7.06739 7.42916 7.53555 7.92015 8.23144 8.39480 8.89944 9.08283 9.56087 11.03550 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.026696 B = 0.003531 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.586930 B = 7928.636385 C = 8277.488298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.106 3.894 3 N -0.598 5.598 4 C 0.248 3.752 5 C -0.526 4.526 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.507 3.493 14 O -0.524 6.524 15 C -0.002 4.002 16 N -0.439 5.439 17 C 0.021 3.979 18 C -0.177 4.177 19 C 0.462 3.538 20 F -0.183 7.183 21 F -0.181 7.181 22 F -0.182 7.182 23 C 0.010 3.990 24 H 0.060 0.940 25 H 0.048 0.952 26 H 0.061 0.939 27 H 0.083 0.917 28 H 0.063 0.937 29 H 0.032 0.968 30 H 0.043 0.957 31 H 0.263 0.737 32 H 0.068 0.932 33 H 0.104 0.896 34 H 0.109 0.891 35 H 0.082 0.918 36 H 0.147 0.853 37 H 0.080 0.920 38 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.114 -5.680 17.958 20.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.019 4.019 3 N -0.331 5.331 4 C 0.129 3.871 5 C -0.565 4.565 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.726 3.274 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.292 3.708 14 O -0.400 6.400 15 C -0.133 4.133 16 N -0.161 5.161 17 C -0.108 4.108 18 C -0.197 4.197 19 C 0.407 3.593 20 F -0.164 7.164 21 F -0.162 7.162 22 F -0.164 7.164 23 C -0.119 4.119 24 H 0.079 0.921 25 H 0.067 0.933 26 H 0.081 0.919 27 H 0.102 0.898 28 H 0.081 0.919 29 H 0.050 0.950 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.122 0.878 34 H 0.128 0.872 35 H 0.100 0.900 36 H 0.164 0.836 37 H 0.098 0.902 38 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -7.220 -4.793 17.622 19.637 hybrid contribution -0.146 -0.565 -0.265 0.641 sum -7.366 -5.358 17.356 19.601 Atomic orbital electron populations 1.22225 0.96833 1.01439 1.02248 1.21418 0.93438 0.84317 1.02692 1.48261 1.63930 1.13242 1.07676 1.19257 0.96276 0.93597 0.77996 1.21437 0.96925 1.31854 1.06255 0.92468 1.24932 0.97858 0.94893 0.96405 1.69933 1.35707 1.33466 1.14329 0.86497 0.84699 0.77652 0.78591 1.20673 1.21089 1.19863 1.19962 0.79076 0.87135 0.84582 1.90677 1.44830 1.17664 1.86842 1.22773 1.01104 0.97418 0.92054 1.68956 1.39669 1.07365 1.00121 1.23838 0.96083 1.01060 0.89839 1.24268 0.93656 1.03158 0.98570 1.20363 0.87779 0.73513 0.77631 1.93182 1.96368 1.77215 1.49643 1.93196 1.93714 1.35927 1.93408 1.93166 1.65006 1.85565 1.72651 1.23883 1.00748 0.93590 0.93650 0.92114 0.93315 0.91939 0.89821 0.91897 0.95046 0.93929 0.92732 0.91420 0.87751 0.87233 0.89963 0.83561 0.90228 0.87779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.16 10.24 37.16 0.38 -1.78 16 2 C 0.11 1.62 5.93 -4.04 -0.02 1.59 16 3 N -0.60 -12.28 2.46 -175.06 -0.43 -12.71 16 4 C 0.25 6.40 5.16 -5.19 -0.03 6.37 16 5 C -0.53 -14.85 9.39 -34.44 -0.32 -15.17 16 6 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 8 N -0.90 -26.56 13.29 55.43 0.74 -25.82 16 9 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 13 C 0.51 10.24 7.51 -10.98 -0.08 10.15 16 14 O -0.52 -12.93 15.33 5.56 0.09 -12.84 16 15 C 0.00 -0.03 3.86 -4.97 -0.02 -0.05 16 16 N -0.44 -6.01 6.06 -246.06 -1.49 -7.51 16 17 C 0.02 0.26 6.16 -7.54 -0.05 0.21 16 18 C -0.18 -1.70 4.14 -90.09 -0.37 -2.07 16 19 C 0.46 4.56 3.08 37.16 0.11 4.68 16 20 F -0.18 -1.80 17.19 2.25 0.04 -1.76 16 21 F -0.18 -1.95 17.32 2.25 0.04 -1.91 16 22 F -0.18 -1.95 15.73 2.25 0.04 -1.92 16 23 C 0.01 0.10 7.10 -7.54 -0.05 0.05 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.05 0.59 7.22 -51.93 -0.38 0.21 16 26 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 27 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 28 H 0.06 0.78 6.44 -51.93 -0.33 0.45 16 29 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 30 H 0.04 1.25 7.42 -51.93 -0.39 0.86 16 31 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 32 H 0.07 0.81 6.61 -51.93 -0.34 0.46 16 33 H 0.10 1.32 7.40 -51.93 -0.38 0.94 16 34 H 0.11 1.55 8.13 -51.94 -0.42 1.13 16 35 H 0.08 1.02 6.65 -51.93 -0.35 0.67 16 36 H 0.15 1.23 8.14 -51.93 -0.42 0.80 16 37 H 0.08 0.67 7.54 -51.93 -0.39 0.28 16 38 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 328.51 15.07 4.95 4.95 Total: -1.00 -32.89 328.51 -6.66 -39.56 By element: Atomic # 1 Polarization: 2.54 SS G_CDS: -5.06 Total: -2.51 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: -0.55 Total: 5.63 kcal Atomic # 7 Polarization: -44.85 SS G_CDS: -1.19 Total: -46.04 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: 0.09 Total: -12.84 kcal Atomic # 9 Polarization: -5.70 SS G_CDS: 0.11 Total: -5.59 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.89 -6.66 -39.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574268791.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.727 kcal (2) G-P(sol) polarization free energy of solvation -32.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds