Wall clock time and date at job start Tue Mar 31 2020 07:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46498 * 119.99632 * 2 1 4 4 C 1.52995 * 109.47331 * 269.99765 * 3 2 1 5 5 F 1.39905 * 109.47000 * 59.99987 * 4 3 2 6 6 F 1.39902 * 109.47702 * 180.02562 * 4 3 2 7 7 F 1.39901 * 109.47216 * 300.00033 * 4 3 2 8 8 C 1.34775 * 120.00659 * 179.97438 * 2 1 3 9 9 O 1.21588 * 120.00445 * 173.48158 * 8 2 1 10 10 N 1.34775 * 119.99577 * 353.48605 * 8 2 1 11 11 C 1.46929 * 120.63315 * 159.76591 * 10 8 2 12 12 C 1.53180 * 108.77884 * 126.36769 * 11 10 8 13 13 C 1.53043 * 109.31494 * 54.63597 * 12 11 10 14 14 C 1.53034 * 109.53797 * 298.63920 * 13 12 11 15 15 H 1.09004 * 109.49646 * 301.41081 * 14 13 12 16 16 C 1.50697 * 109.49880 * 181.34610 * 14 13 12 17 17 H 1.08000 * 120.00165 * 0.06133 * 16 14 13 18 18 C 1.37882 * 120.00328 * 180.02562 * 16 14 13 19 19 N 1.31518 * 119.99553 * 359.97438 * 18 16 14 20 20 Si 1.86799 * 120.00229 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47106 * 0.02562 * 20 18 16 22 22 H 1.48507 * 109.46924 * 119.99710 * 20 18 16 23 23 H 1.48492 * 109.47083 * 239.99864 * 20 18 16 24 24 C 1.46998 * 120.61800 * 339.74407 * 10 8 2 25 25 H 1.08996 * 109.47115 * 272.24448 * 1 2 3 26 26 H 1.08995 * 109.47239 * 32.24990 * 1 2 3 27 27 H 1.09002 * 109.46817 * 152.24987 * 1 2 3 28 28 H 1.09001 * 109.47433 * 30.00288 * 3 2 1 29 29 H 1.09003 * 109.47388 * 149.99382 * 3 2 1 30 30 H 1.09007 * 109.58375 * 6.57993 * 11 10 8 31 31 H 1.09002 * 109.58736 * 246.15910 * 11 10 8 32 32 H 1.09007 * 109.50141 * 294.68428 * 12 11 10 33 33 H 1.09005 * 109.50221 * 174.59201 * 12 11 10 34 34 H 1.08995 * 109.46511 * 178.61584 * 13 12 11 35 35 H 1.09005 * 109.44510 * 58.64756 * 13 12 11 36 36 H 0.96999 * 119.99679 * 180.02562 * 19 18 16 37 37 H 1.08997 * 109.58279 * 113.84917 * 24 10 8 38 38 H 1.09004 * 109.62291 * 353.39949 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7104 -1.4424 5 9 1.2300 1.8777 -2.1020 6 9 3.1524 2.9218 -1.4425 7 9 3.2086 0.7355 -2.1019 8 6 2.1390 -1.1671 0.0005 9 8 3.3490 -1.1705 -0.1190 10 7 1.4717 -2.3305 0.1335 11 6 2.0821 -3.5968 -0.2941 12 6 2.0368 -4.5855 0.8750 13 6 0.5948 -4.7185 1.3699 14 6 0.0969 -3.3595 1.8671 15 1 0.7457 -3.0053 2.6682 16 6 -1.3115 -3.4985 2.3847 17 1 -1.8026 -4.4601 2.3626 18 6 -1.9731 -2.3981 2.8874 19 7 -1.3746 -1.2273 2.9155 20 14 -3.7192 -2.5702 3.5284 21 1 -4.1616 -3.9806 3.3869 22 1 -3.7613 -2.1801 4.9607 23 1 -4.6223 -1.6869 2.7479 24 6 0.1195 -2.3564 0.7095 25 1 -0.3633 0.0402 1.0268 26 1 -0.3633 0.8691 -0.5483 27 1 -0.3633 -0.9095 -0.4785 28 1 1.6083 2.0284 0.5139 29 1 3.1498 1.1386 0.5139 30 1 3.1179 -3.4229 -0.5858 31 1 1.5259 -4.0037 -1.1386 32 1 2.6674 -4.2198 1.6855 33 1 2.3987 -5.5586 0.5428 34 1 0.5559 -5.4402 2.1858 35 1 -0.0395 -5.0606 0.5520 36 1 -1.8399 -0.4532 3.2694 37 1 -0.5966 -2.6623 -0.0531 38 1 -0.1395 -1.3646 1.0803 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594806265.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:57:51 Heat of formation + Delta-G solvation = -151.177151 kcal Electronic energy + Delta-G solvation = -25748.715731 eV Core-core repulsion = 21598.577013 eV Total energy + Delta-G solvation = -4150.138718 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.87814 -47.45461 -47.29480 -40.15525 -37.04227 -35.53712 -33.27318 -32.26797 -30.15195 -29.07201 -26.88402 -25.16187 -24.09169 -22.89999 -21.80560 -19.92591 -19.08735 -18.30243 -18.23949 -17.38947 -16.61738 -16.22443 -15.86255 -14.99253 -14.67231 -14.42654 -14.38579 -14.08408 -13.94742 -13.81211 -13.51106 -13.49992 -13.42353 -13.16187 -12.79873 -12.49451 -12.39583 -12.21005 -12.05592 -11.75058 -11.58769 -11.09015 -10.73678 -10.51171 -10.37193 -10.26689 -9.89270 -9.69523 -9.12427 -8.91794 -8.58197 -8.46865 -7.69331 -6.22061 -4.25509 2.71935 2.98415 3.18486 3.28109 3.31801 3.56819 4.04763 4.15151 4.24178 4.30897 4.51673 5.09937 5.14022 5.38441 5.44051 5.55972 5.62193 5.80006 5.94675 6.08475 6.27160 6.32820 6.39863 6.46845 6.56453 6.61524 6.81301 6.90178 6.92993 7.08015 7.38234 7.54534 7.70902 7.86400 8.19481 8.41986 8.78874 8.99622 9.40365 10.85644 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.018057 B = 0.005673 C = 0.004563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.300567 B = 4934.318265 C = 6135.107233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.625 5.625 3 C 0.100 3.900 4 C 0.430 3.570 5 F -0.187 7.187 6 F -0.189 7.189 7 F -0.172 7.172 8 C 0.713 3.287 9 O -0.596 6.596 10 N -0.624 5.624 11 C 0.134 3.866 12 C -0.133 4.133 13 C -0.111 4.111 14 C 0.036 3.964 15 H 0.030 0.970 16 C -0.507 4.507 17 H 0.059 0.941 18 C 0.062 3.938 19 N -0.897 5.897 20 Si 0.894 3.106 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.283 1.283 24 C 0.075 3.925 25 H 0.101 0.899 26 H 0.057 0.943 27 H 0.090 0.910 28 H 0.119 0.881 29 H 0.124 0.876 30 H 0.079 0.921 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.050 0.950 35 H 0.048 0.952 36 H 0.262 0.738 37 H 0.042 0.958 38 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.719 4.358 -6.309 8.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.362 5.362 3 C -0.028 4.028 4 C 0.374 3.626 5 F -0.168 7.168 6 F -0.170 7.170 7 F -0.154 7.154 8 C 0.416 3.584 9 O -0.475 6.475 10 N -0.360 5.360 11 C 0.010 3.990 12 C -0.171 4.171 13 C -0.148 4.148 14 C 0.017 3.983 15 H 0.048 0.952 16 C -0.546 4.546 17 H 0.078 0.922 18 C -0.138 4.138 19 N -0.537 5.537 20 Si 0.722 3.278 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.209 1.209 24 C -0.044 4.044 25 H 0.119 0.881 26 H 0.075 0.925 27 H 0.108 0.892 28 H 0.137 0.863 29 H 0.142 0.858 30 H 0.097 0.903 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.060 0.940 38 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 4.309 4.485 -6.345 8.885 hybrid contribution -1.097 0.046 0.129 1.106 sum 3.211 4.532 -6.216 8.336 Atomic orbital electron populations 1.22854 0.77910 1.03232 1.04392 1.46744 1.07364 1.03349 1.78708 1.22294 1.02368 0.88328 0.89821 1.21570 0.74012 0.74799 0.92228 1.93155 1.44488 1.95383 1.83800 1.93155 1.79824 1.46967 1.97085 1.93237 1.76370 1.62454 1.83299 1.15875 0.84719 0.80548 0.77233 1.90847 1.12047 1.86169 1.58481 1.47526 1.19570 1.04048 1.64821 1.21363 0.98381 0.83176 0.96051 1.21938 0.99169 0.97759 0.98232 1.21620 0.93493 1.00174 0.99557 1.19030 0.96360 0.89708 0.93228 0.95183 1.21231 0.98451 0.95155 1.39771 0.92230 1.24970 0.98151 0.95371 0.95334 1.69771 1.37207 0.99754 1.46926 0.86491 0.84393 0.78256 0.78628 1.19816 1.21020 1.20912 1.23478 0.78457 1.07587 0.94911 0.88072 0.92483 0.89211 0.86279 0.85834 0.90297 0.92662 0.92110 0.92313 0.93129 0.93277 0.92801 0.93992 0.83773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.94 8.39 59.85 0.50 1.45 16 2 N -0.63 -10.81 2.79 -194.72 -0.54 -11.36 16 3 C 0.10 1.40 5.43 -4.05 -0.02 1.38 16 4 C 0.43 6.22 3.29 37.15 0.12 6.34 16 5 F -0.19 -2.71 16.19 2.25 0.04 -2.68 16 6 F -0.19 -2.52 17.32 2.25 0.04 -2.48 16 7 F -0.17 -2.96 15.98 2.25 0.04 -2.93 16 8 C 0.71 14.41 7.65 -86.92 -0.66 13.74 16 9 O -0.60 -13.15 14.64 5.29 0.08 -13.07 16 10 N -0.62 -12.43 2.90 -178.44 -0.52 -12.95 16 11 C 0.13 2.38 6.43 -3.71 -0.02 2.35 16 12 C -0.13 -2.29 6.08 -26.62 -0.16 -2.46 16 13 C -0.11 -2.17 5.11 -26.69 -0.14 -2.30 16 14 C 0.04 0.82 2.25 -91.66 -0.21 0.62 16 15 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 16 C -0.51 -12.58 8.56 -34.44 -0.29 -12.88 16 17 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 18 C 0.06 1.54 5.30 -17.82 -0.09 1.44 16 19 N -0.90 -22.11 10.68 55.43 0.59 -21.52 16 20 Si 0.89 19.42 29.54 -169.99 -5.02 14.40 16 21 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 22 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 23 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 24 C 0.08 1.59 3.35 -3.67 -0.01 1.58 16 25 H 0.10 1.87 5.89 -51.93 -0.31 1.56 16 26 H 0.06 0.79 7.21 -51.93 -0.37 0.42 16 27 H 0.09 1.57 5.07 -51.93 -0.26 1.31 16 28 H 0.12 1.29 8.07 -51.93 -0.42 0.87 16 29 H 0.12 1.74 7.52 -51.93 -0.39 1.35 16 30 H 0.08 1.41 7.11 -51.92 -0.37 1.04 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.06 1.12 8.14 -51.92 -0.42 0.70 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.26 6.18 8.31 -40.82 -0.34 5.84 16 37 H 0.04 0.88 7.60 -51.93 -0.39 0.49 16 38 H 0.15 3.09 1.81 -60.91 -0.11 2.98 16 LS Contribution 308.37 15.07 4.65 4.65 Total: -1.00 -27.47 308.37 -6.35 -33.82 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -4.71 Total: 2.86 kcal Atomic # 6 Polarization: 12.25 SS G_CDS: -0.99 Total: 11.26 kcal Atomic # 7 Polarization: -45.36 SS G_CDS: -0.47 Total: -45.83 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: 0.08 Total: -13.07 kcal Atomic # 9 Polarization: -8.20 SS G_CDS: 0.11 Total: -8.09 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.02 Total: 14.40 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -27.47 -6.35 -33.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594806265.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.356 kcal (2) G-P(sol) polarization free energy of solvation -27.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds