Wall clock time and date at job start Tue Mar 31 2020 07:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46498 * 119.99632 * 2 1 4 4 C 1.52995 * 109.47331 * 269.99765 * 3 2 1 5 5 F 1.39905 * 109.47000 * 59.99987 * 4 3 2 6 6 F 1.39902 * 109.47702 * 180.02562 * 4 3 2 7 7 F 1.39901 * 109.47216 * 300.00033 * 4 3 2 8 8 C 1.34775 * 120.00659 * 179.97438 * 2 1 3 9 9 O 1.21588 * 120.00445 * 173.48158 * 8 2 1 10 10 N 1.34775 * 119.99577 * 353.48605 * 8 2 1 11 11 C 1.46929 * 120.63315 * 159.76591 * 10 8 2 12 12 C 1.53180 * 108.77884 * 126.36769 * 11 10 8 13 13 C 1.53043 * 109.31494 * 54.63597 * 12 11 10 14 14 C 1.53034 * 109.53797 * 298.63920 * 13 12 11 15 15 H 1.09004 * 109.49646 * 301.41081 * 14 13 12 16 16 C 1.50697 * 109.49880 * 181.34610 * 14 13 12 17 17 H 1.08000 * 120.00165 * 0.06133 * 16 14 13 18 18 C 1.37882 * 120.00328 * 180.02562 * 16 14 13 19 19 N 1.31518 * 119.99553 * 359.97438 * 18 16 14 20 20 Si 1.86799 * 120.00229 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47106 * 0.02562 * 20 18 16 22 22 H 1.48507 * 109.46924 * 119.99710 * 20 18 16 23 23 H 1.48492 * 109.47083 * 239.99864 * 20 18 16 24 24 C 1.46998 * 120.61800 * 339.74407 * 10 8 2 25 25 H 1.08996 * 109.47115 * 272.24448 * 1 2 3 26 26 H 1.08995 * 109.47239 * 32.24990 * 1 2 3 27 27 H 1.09002 * 109.46817 * 152.24987 * 1 2 3 28 28 H 1.09001 * 109.47433 * 30.00288 * 3 2 1 29 29 H 1.09003 * 109.47388 * 149.99382 * 3 2 1 30 30 H 1.09007 * 109.58375 * 6.57993 * 11 10 8 31 31 H 1.09002 * 109.58736 * 246.15910 * 11 10 8 32 32 H 1.09007 * 109.50141 * 294.68428 * 12 11 10 33 33 H 1.09005 * 109.50221 * 174.59201 * 12 11 10 34 34 H 1.08995 * 109.46511 * 178.61584 * 13 12 11 35 35 H 1.09005 * 109.44510 * 58.64756 * 13 12 11 36 36 H 0.96999 * 119.99679 * 180.02562 * 19 18 16 37 37 H 1.08997 * 109.58279 * 113.84917 * 24 10 8 38 38 H 1.09004 * 109.62291 * 353.39949 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7104 -1.4424 5 9 1.2300 1.8777 -2.1020 6 9 3.1524 2.9218 -1.4425 7 9 3.2086 0.7355 -2.1019 8 6 2.1390 -1.1671 0.0005 9 8 3.3490 -1.1705 -0.1190 10 7 1.4717 -2.3305 0.1335 11 6 2.0821 -3.5968 -0.2941 12 6 2.0368 -4.5855 0.8750 13 6 0.5948 -4.7185 1.3699 14 6 0.0969 -3.3595 1.8671 15 1 0.7457 -3.0053 2.6682 16 6 -1.3115 -3.4985 2.3847 17 1 -1.8026 -4.4601 2.3626 18 6 -1.9731 -2.3981 2.8874 19 7 -1.3746 -1.2273 2.9155 20 14 -3.7192 -2.5702 3.5284 21 1 -4.1616 -3.9806 3.3869 22 1 -3.7613 -2.1801 4.9607 23 1 -4.6223 -1.6869 2.7479 24 6 0.1195 -2.3564 0.7095 25 1 -0.3633 0.0402 1.0268 26 1 -0.3633 0.8691 -0.5483 27 1 -0.3633 -0.9095 -0.4785 28 1 1.6083 2.0284 0.5139 29 1 3.1498 1.1386 0.5139 30 1 3.1179 -3.4229 -0.5858 31 1 1.5259 -4.0037 -1.1386 32 1 2.6674 -4.2198 1.6855 33 1 2.3987 -5.5586 0.5428 34 1 0.5559 -5.4402 2.1858 35 1 -0.0395 -5.0606 0.5520 36 1 -1.8399 -0.4532 3.2694 37 1 -0.5966 -2.6623 -0.0531 38 1 -0.1395 -1.3646 1.0803 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594806265.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:57:51 Heat of formation + Delta-G solvation = -165.690058 kcal Electronic energy + Delta-G solvation = -25749.345058 eV Core-core repulsion = 21598.577013 eV Total energy + Delta-G solvation = -4150.768045 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -51.04837 -48.58302 -48.52491 -41.67080 -38.60849 -37.00427 -35.05635 -33.76956 -31.76922 -30.43422 -28.34236 -26.90882 -25.50930 -24.26250 -23.34113 -21.50353 -20.55524 -19.48711 -19.44756 -18.65474 -18.38052 -17.80746 -17.34057 -16.56428 -16.35429 -15.79922 -15.64266 -15.38288 -15.24785 -15.00128 -14.93881 -14.75093 -14.69673 -14.67719 -14.41610 -13.99135 -13.85746 -13.70345 -13.41033 -13.15417 -12.99656 -12.79866 -12.36004 -12.18485 -12.05859 -11.79892 -11.51772 -11.39719 -10.85683 -10.58202 -10.40615 -9.93838 -9.24146 -8.08768 -6.18853 1.41429 1.46461 1.51539 1.59663 1.70637 2.11361 2.47576 2.75452 2.87500 3.07703 3.22073 3.32586 3.98487 4.08663 4.15064 4.17286 4.29866 4.35878 4.58024 4.60871 4.77514 4.82675 4.90757 5.01698 5.06916 5.18041 5.25739 5.30852 5.33700 5.57845 5.64365 5.90714 5.93555 6.08217 6.37034 6.82603 6.90828 7.44577 7.49553 8.97657 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.018057 B = 0.005673 C = 0.004563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.300567 B = 4934.318265 C = 6135.107233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.625 5.625 3 C 0.096 3.904 4 C 0.436 3.564 5 F -0.186 7.186 6 F -0.180 7.180 7 F -0.190 7.190 8 C 0.704 3.296 9 O -0.620 6.620 10 N -0.630 5.630 11 C 0.129 3.871 12 C -0.123 4.123 13 C -0.106 4.106 14 C 0.034 3.966 15 H -0.012 1.012 16 C -0.530 4.530 17 H 0.053 0.947 18 C 0.027 3.973 19 N -0.908 5.908 20 Si 0.950 3.050 21 H -0.275 1.275 22 H -0.288 1.288 23 H -0.276 1.276 24 C 0.087 3.913 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.077 0.923 28 H 0.156 0.844 29 H 0.122 0.878 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.043 0.957 33 H 0.094 0.906 34 H 0.048 0.952 35 H 0.057 0.943 36 H 0.265 0.735 37 H 0.041 0.959 38 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.096 4.720 -6.886 8.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.361 5.361 3 C -0.031 4.031 4 C 0.380 3.620 5 F -0.167 7.167 6 F -0.162 7.162 7 F -0.172 7.172 8 C 0.407 3.593 9 O -0.501 6.501 10 N -0.366 5.366 11 C 0.006 3.994 12 C -0.161 4.161 13 C -0.144 4.144 14 C 0.015 3.985 15 H 0.006 0.994 16 C -0.568 4.568 17 H 0.071 0.929 18 C -0.173 4.173 19 N -0.547 5.547 20 Si 0.777 3.223 21 H -0.200 1.200 22 H -0.214 1.214 23 H -0.201 1.201 24 C -0.034 4.034 25 H 0.101 0.899 26 H 0.105 0.895 27 H 0.096 0.904 28 H 0.173 0.827 29 H 0.140 0.860 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.062 0.938 33 H 0.112 0.888 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.059 0.941 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 3.684 4.862 -6.931 9.233 hybrid contribution -0.887 -0.026 0.331 0.947 sum 2.797 4.836 -6.600 8.647 Atomic orbital electron populations 1.22688 0.77377 1.04015 1.03458 1.46811 1.07760 1.03659 1.77886 1.22581 1.02804 0.87793 0.89888 1.21512 0.73827 0.74690 0.92015 1.93156 1.44365 1.95358 1.83830 1.93172 1.79654 1.46308 1.97032 1.93205 1.76906 1.63364 1.83722 1.16106 0.84626 0.81284 0.77234 1.90822 1.12966 1.86622 1.59662 1.47603 1.19193 1.04949 1.64807 1.21534 0.98550 0.82529 0.96759 1.21863 0.97294 0.99431 0.97523 1.21535 0.95022 0.98150 0.99688 1.18975 0.94817 0.91984 0.92768 0.99384 1.21438 0.99461 0.95106 1.40844 0.92863 1.25561 1.01034 0.95245 0.95449 1.69856 1.38133 1.00035 1.46724 0.85633 0.80910 0.78042 0.77755 1.19973 1.21387 1.20114 1.23247 0.79071 1.06885 0.94148 0.89905 0.89511 0.90414 0.82655 0.85964 0.90406 0.90676 0.93837 0.88794 0.93366 0.92446 0.92511 0.94055 0.84025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.08 8.39 127.77 1.07 3.15 16 2 N -0.63 -20.97 2.79 -888.24 -2.48 -23.45 16 3 C 0.10 2.52 5.43 86.38 0.47 2.99 16 4 C 0.44 11.84 3.29 71.98 0.24 12.08 16 5 F -0.19 -5.00 16.19 44.97 0.73 -4.27 16 6 F -0.18 -4.46 17.32 44.97 0.78 -3.68 16 7 F -0.19 -6.38 15.98 44.97 0.72 -5.67 16 8 C 0.70 28.18 7.65 179.06 1.37 29.55 16 9 O -0.62 -27.18 14.64 -3.99 -0.06 -27.24 16 10 N -0.63 -24.89 2.90 -836.72 -2.43 -27.32 16 11 C 0.13 4.44 6.43 86.36 0.56 5.00 16 12 C -0.12 -4.11 6.08 30.67 0.19 -3.93 16 13 C -0.11 -4.10 5.11 30.62 0.16 -3.94 16 14 C 0.03 1.57 2.25 -11.46 -0.03 1.54 16 15 H -0.01 -0.65 8.14 -2.38 -0.02 -0.67 16 16 C -0.53 -26.43 8.56 25.60 0.22 -26.21 16 17 H 0.05 2.66 7.74 -2.91 -0.02 2.63 16 18 C 0.03 1.31 5.30 84.66 0.45 1.76 16 19 N -0.91 -44.66 10.68 21.45 0.23 -44.43 16 20 Si 0.95 39.44 29.54 68.60 2.03 41.46 16 21 H -0.28 -11.40 7.11 99.48 0.71 -10.70 16 22 H -0.29 -12.05 7.11 99.48 0.71 -11.34 16 23 H -0.28 -11.06 7.11 99.48 0.71 -10.35 16 24 C 0.09 3.65 3.35 86.35 0.29 3.94 16 25 H 0.08 3.00 5.89 -2.39 -0.01 2.99 16 26 H 0.09 2.21 7.21 -2.39 -0.02 2.20 16 27 H 0.08 2.66 5.07 -2.39 -0.01 2.64 16 28 H 0.16 2.92 8.07 -2.39 -0.02 2.90 16 29 H 0.12 3.30 7.52 -2.39 -0.02 3.28 16 30 H 0.08 2.71 7.11 -2.38 -0.02 2.69 16 31 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 33 H 0.09 2.49 8.14 -2.38 -0.02 2.47 16 34 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 36 H 0.27 12.36 8.31 -92.71 -0.77 11.59 16 37 H 0.04 1.73 7.60 -2.39 -0.02 1.71 16 38 H 0.14 6.08 1.81 -10.82 -0.02 6.06 16 Total: -1.00 -58.33 308.37 5.57 -52.76 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: 1.08 Total: 15.88 kcal Atomic # 6 Polarization: 20.96 SS G_CDS: 4.98 Total: 25.94 kcal Atomic # 7 Polarization: -90.51 SS G_CDS: -4.68 Total: -95.19 kcal Atomic # 8 Polarization: -27.18 SS G_CDS: -0.06 Total: -27.24 kcal Atomic # 9 Polarization: -15.84 SS G_CDS: 2.23 Total: -13.62 kcal Atomic # 14 Polarization: 39.44 SS G_CDS: 2.03 Total: 41.46 kcal Total: -58.33 5.57 -52.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594806265.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.925 kcal (2) G-P(sol) polarization free energy of solvation -58.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds