Wall clock time and date at job start Tue Mar 31 2020 07:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46720 * 2 1 4 4 N 1.46491 * 109.47092 * 119.99702 * 2 1 3 5 5 C 1.34778 * 120.00378 * 274.72887 * 4 2 1 6 6 O 1.21591 * 119.99525 * 355.15292 * 5 4 2 7 7 N 1.34769 * 120.00401 * 175.16041 * 5 4 2 8 8 C 1.46930 * 120.63375 * 5.04982 * 7 5 4 9 9 C 1.53188 * 108.77472 * 233.58773 * 8 7 5 10 10 C 1.53040 * 109.31373 * 305.36298 * 9 8 7 11 11 C 1.53034 * 109.54171 * 61.36307 * 10 9 8 12 12 H 1.08999 * 109.49700 * 58.58899 * 11 10 9 13 13 C 1.50695 * 109.50203 * 178.68424 * 11 10 9 14 14 H 1.08001 * 119.99767 * 35.06961 * 13 11 10 15 15 C 1.37869 * 120.00571 * 215.06994 * 13 11 10 16 16 N 1.31520 * 120.00473 * 174.98365 * 15 13 11 17 17 Si 1.86803 * 119.99814 * 354.98144 * 15 13 11 18 18 H 1.48501 * 109.47367 * 94.94587 * 17 15 13 19 19 H 1.48504 * 109.47136 * 214.95088 * 17 15 13 20 20 H 1.48504 * 109.47196 * 334.94532 * 17 15 13 21 21 C 1.46935 * 120.63097 * 184.76517 * 7 5 4 22 22 C 1.53000 * 109.46929 * 239.99645 * 2 1 3 23 23 F 1.39895 * 109.47639 * 299.99685 * 22 2 1 24 24 F 1.39906 * 109.47071 * 60.00091 * 22 2 1 25 25 F 1.39907 * 109.46849 * 179.97438 * 22 2 1 26 26 H 1.08997 * 109.47308 * 60.00458 * 1 2 3 27 27 H 1.09007 * 109.47145 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47544 * 300.00143 * 1 2 3 29 29 H 0.97001 * 120.00360 * 94.99935 * 4 2 1 30 30 H 1.09001 * 109.58313 * 353.37098 * 8 7 5 31 31 H 1.08997 * 109.58690 * 113.65498 * 8 7 5 32 32 H 1.08997 * 109.50109 * 65.31439 * 9 8 7 33 33 H 1.09004 * 109.49680 * 185.41099 * 9 8 7 34 34 H 1.08995 * 109.46103 * 181.38851 * 10 9 8 35 35 H 1.09006 * 109.45582 * 301.35530 * 10 9 8 36 36 H 0.97003 * 119.99660 * 180.02562 * 16 15 13 37 37 H 1.08997 * 109.58844 * 246.20081 * 21 7 5 38 38 H 1.08999 * 109.58356 * 6.63098 * 21 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1961 5 6 2.1522 -0.0168 2.3558 6 8 1.9526 1.1821 2.3888 7 7 2.5076 -0.6720 3.4786 8 6 2.8595 -2.0978 3.4339 9 6 2.0024 -2.8495 4.4572 10 6 2.1738 -2.2027 5.8336 11 6 1.6975 -0.7494 5.7791 12 1 0.6527 -0.7204 5.4697 13 6 1.8365 -0.1231 7.1426 14 1 2.6624 -0.3985 7.7817 15 6 0.9094 0.8015 7.5744 16 7 0.9737 1.2745 8.7999 17 14 -0.4382 1.3826 6.4186 18 1 -1.6640 0.5745 6.6413 19 1 -0.7339 2.8138 6.6828 20 1 0.0120 1.2217 5.0126 21 6 2.5565 0.0275 4.7698 22 6 2.0400 -0.7213 -1.2492 23 9 1.5737 -2.0403 -1.2492 24 9 1.5736 -0.0619 -2.3916 25 9 3.4390 -0.7208 -1.2495 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 2.2490 -1.6317 1.1527 30 1 2.6656 -2.4909 2.4358 31 1 3.9148 -2.2215 3.6767 32 1 0.9548 -2.8008 4.1603 33 1 2.3201 -3.8913 4.5026 34 1 1.5842 -2.7509 6.5683 35 1 3.2255 -2.2295 6.1189 36 1 0.3211 1.9248 9.1037 37 1 3.5870 0.0733 5.1219 38 1 2.1626 1.0372 4.6535 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595638140.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:33:40 Heat of formation + Delta-G solvation = -187.064007 kcal Electronic energy + Delta-G solvation = -25074.133109 eV Core-core repulsion = 20922.438220 eV Total energy + Delta-G solvation = -4151.694889 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.43109 -47.93543 -47.88984 -40.23035 -37.44474 -35.60167 -33.52031 -32.06922 -30.97763 -30.18672 -26.70537 -25.27666 -24.78070 -22.23738 -21.95445 -20.44991 -19.38353 -18.75823 -18.67110 -18.39385 -17.18778 -16.75327 -16.06634 -15.28917 -14.92443 -14.77432 -14.53684 -14.33083 -14.14526 -14.06268 -14.05000 -13.89969 -13.86460 -13.58824 -13.05658 -13.00608 -12.63187 -12.49027 -12.34765 -12.17980 -11.55955 -11.32617 -11.10160 -10.67394 -10.60768 -10.12955 -9.92700 -9.73336 -9.41399 -9.38144 -9.13897 -8.65412 -8.06096 -6.13736 -4.14637 2.24027 2.63380 3.28364 3.31764 3.40006 3.42356 3.49532 3.76224 3.80370 4.06209 4.40788 4.70526 4.82764 5.01344 5.17187 5.28728 5.30059 5.41638 5.48810 5.77439 5.89076 5.92806 6.10908 6.16064 6.19144 6.35258 6.54593 6.60035 6.69669 6.84410 7.08230 7.25597 7.35020 7.70968 8.07276 8.45328 8.73992 8.91741 9.49637 10.98658 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.023974 B = 0.004589 C = 0.004180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.655615 B = 6099.948184 C = 6696.676350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.124 3.876 3 H 0.131 0.869 4 N -0.749 5.749 5 C 0.709 3.291 6 O -0.585 6.585 7 N -0.620 5.620 8 C 0.114 3.886 9 C -0.137 4.137 10 C -0.103 4.103 11 C 0.007 3.993 12 H 0.035 0.965 13 C -0.515 4.515 14 H 0.075 0.925 15 C 0.076 3.924 16 N -0.895 5.895 17 Si 0.869 3.131 18 H -0.280 1.280 19 H -0.287 1.287 20 H -0.254 1.254 21 C 0.128 3.872 22 C 0.447 3.553 23 F -0.181 7.181 24 F -0.175 7.175 25 F -0.178 7.178 26 H 0.078 0.922 27 H 0.070 0.930 28 H 0.087 0.913 29 H 0.399 0.601 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.054 0.946 36 H 0.265 0.735 37 H 0.061 0.939 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.356 -7.808 -19.656 21.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.016 3.984 3 H 0.149 0.851 4 N -0.410 5.410 5 C 0.411 3.589 6 O -0.463 6.463 7 N -0.355 5.355 8 C -0.009 4.009 9 C -0.175 4.175 10 C -0.141 4.141 11 C -0.013 4.013 12 H 0.053 0.947 13 C -0.553 4.553 14 H 0.093 0.907 15 C -0.127 4.127 16 N -0.532 5.532 17 Si 0.696 3.304 18 H -0.206 1.206 19 H -0.213 1.213 20 H -0.178 1.178 21 C 0.007 3.993 22 C 0.392 3.608 23 F -0.162 7.162 24 F -0.156 7.156 25 F -0.159 7.159 26 H 0.097 0.903 27 H 0.089 0.911 28 H 0.106 0.894 29 H 0.237 0.763 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.141 -6.798 -19.472 20.656 hybrid contribution -0.531 -0.269 -0.784 0.985 sum 0.609 -7.067 -20.257 21.463 Atomic orbital electron populations 1.22271 0.91847 1.03970 1.04757 1.21815 0.97151 0.98675 0.80804 0.85103 1.45116 1.73505 1.13831 1.08517 1.15771 0.78181 0.85024 0.79968 1.90918 1.58344 1.12502 1.84543 1.47783 1.69947 1.10201 1.07613 1.21592 0.99494 0.81143 0.98708 1.22007 0.99787 0.98504 0.97218 1.21555 1.01096 0.97671 0.93811 1.19567 0.95132 0.91796 0.94831 0.94713 1.20892 1.12254 1.23853 0.98259 0.90654 1.25067 0.97340 0.95583 0.94685 1.69906 1.36469 1.30512 1.16304 0.86961 0.82314 0.78204 0.82927 1.20604 1.21345 1.17791 1.22567 1.00916 0.97434 0.78407 1.20797 0.75820 0.77803 0.86377 1.93183 1.88422 1.37838 1.96762 1.93199 1.88467 1.80705 1.53266 1.93223 1.29579 1.96343 1.96767 0.90336 0.91096 0.89420 0.76301 0.91943 0.91331 0.92087 0.91684 0.92106 0.92692 0.92534 0.92104 0.89780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.73 9.24 37.16 0.34 -1.39 16 2 C 0.12 1.39 2.60 -67.93 -0.18 1.21 16 3 H 0.13 1.58 7.50 -51.93 -0.39 1.19 16 4 N -0.75 -9.64 4.89 -58.68 -0.29 -9.93 16 5 C 0.71 12.39 8.27 -86.92 -0.72 11.67 16 6 O -0.59 -12.48 15.40 5.29 0.08 -12.39 16 7 N -0.62 -10.76 2.97 -178.22 -0.53 -11.28 16 8 C 0.11 1.50 6.43 -3.71 -0.02 1.48 16 9 C -0.14 -1.91 6.08 -26.61 -0.16 -2.07 16 10 C -0.10 -1.87 5.15 -26.69 -0.14 -2.01 16 11 C 0.01 0.15 1.79 -91.43 -0.16 -0.02 16 12 H 0.03 0.81 5.59 -51.93 -0.29 0.52 16 13 C -0.51 -13.79 8.86 -34.45 -0.31 -14.10 16 14 H 0.08 2.18 8.06 -52.49 -0.42 1.75 16 15 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 16 N -0.89 -26.85 13.96 55.43 0.77 -26.08 16 17 Si 0.87 21.69 26.64 -169.99 -4.53 17.16 16 18 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 19 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 20 H -0.25 -6.33 6.01 56.52 0.34 -5.99 16 21 C 0.13 2.68 5.53 -3.48 -0.02 2.66 16 22 C 0.45 4.49 2.75 37.16 0.10 4.60 16 23 F -0.18 -1.77 16.44 2.25 0.04 -1.73 16 24 F -0.17 -1.73 16.80 2.25 0.04 -1.69 16 25 F -0.18 -1.96 17.24 2.25 0.04 -1.92 16 26 H 0.08 0.65 7.80 -51.93 -0.41 0.25 16 27 H 0.07 0.66 7.80 -51.93 -0.41 0.26 16 28 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.40 4.26 5.77 -40.82 -0.24 4.03 16 30 H 0.06 0.64 5.57 -51.93 -0.29 0.35 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 35 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 37 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 38 H 0.08 2.01 5.97 -51.93 -0.31 1.70 16 LS Contribution 316.08 15.07 4.76 4.76 Total: -1.00 -31.33 316.08 -5.87 -37.20 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -4.90 Total: 1.83 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: -1.36 Total: 4.09 kcal Atomic # 7 Polarization: -47.25 SS G_CDS: -0.04 Total: -47.30 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: 0.08 Total: -12.39 kcal Atomic # 9 Polarization: -5.46 SS G_CDS: 0.11 Total: -5.35 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.53 Total: 17.16 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.33 -5.87 -37.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595638140.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.862 kcal (2) G-P(sol) polarization free energy of solvation -31.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds