Wall clock time and date at job start Tue Mar 31 2020 07:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46720 * 2 1 4 4 N 1.46491 * 109.47092 * 119.99702 * 2 1 3 5 5 C 1.34778 * 120.00378 * 274.72887 * 4 2 1 6 6 O 1.21591 * 119.99525 * 355.15292 * 5 4 2 7 7 N 1.34769 * 120.00401 * 175.16041 * 5 4 2 8 8 C 1.46930 * 120.63375 * 5.04982 * 7 5 4 9 9 C 1.53188 * 108.77472 * 233.58773 * 8 7 5 10 10 C 1.53040 * 109.31373 * 305.36298 * 9 8 7 11 11 C 1.53034 * 109.54171 * 61.36307 * 10 9 8 12 12 H 1.08999 * 109.49700 * 58.58899 * 11 10 9 13 13 C 1.50695 * 109.50203 * 178.68424 * 11 10 9 14 14 H 1.08001 * 119.99767 * 35.06961 * 13 11 10 15 15 C 1.37869 * 120.00571 * 215.06994 * 13 11 10 16 16 N 1.31520 * 120.00473 * 174.98365 * 15 13 11 17 17 Si 1.86803 * 119.99814 * 354.98144 * 15 13 11 18 18 H 1.48501 * 109.47367 * 94.94587 * 17 15 13 19 19 H 1.48504 * 109.47136 * 214.95088 * 17 15 13 20 20 H 1.48504 * 109.47196 * 334.94532 * 17 15 13 21 21 C 1.46935 * 120.63097 * 184.76517 * 7 5 4 22 22 C 1.53000 * 109.46929 * 239.99645 * 2 1 3 23 23 F 1.39895 * 109.47639 * 299.99685 * 22 2 1 24 24 F 1.39906 * 109.47071 * 60.00091 * 22 2 1 25 25 F 1.39907 * 109.46849 * 179.97438 * 22 2 1 26 26 H 1.08997 * 109.47308 * 60.00458 * 1 2 3 27 27 H 1.09007 * 109.47145 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47544 * 300.00143 * 1 2 3 29 29 H 0.97001 * 120.00360 * 94.99935 * 4 2 1 30 30 H 1.09001 * 109.58313 * 353.37098 * 8 7 5 31 31 H 1.08997 * 109.58690 * 113.65498 * 8 7 5 32 32 H 1.08997 * 109.50109 * 65.31439 * 9 8 7 33 33 H 1.09004 * 109.49680 * 185.41099 * 9 8 7 34 34 H 1.08995 * 109.46103 * 181.38851 * 10 9 8 35 35 H 1.09006 * 109.45582 * 301.35530 * 10 9 8 36 36 H 0.97003 * 119.99660 * 180.02562 * 16 15 13 37 37 H 1.08997 * 109.58844 * 246.20081 * 21 7 5 38 38 H 1.08999 * 109.58356 * 6.63098 * 21 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1961 5 6 2.1522 -0.0168 2.3558 6 8 1.9526 1.1821 2.3888 7 7 2.5076 -0.6720 3.4786 8 6 2.8595 -2.0978 3.4339 9 6 2.0024 -2.8495 4.4572 10 6 2.1738 -2.2027 5.8336 11 6 1.6975 -0.7494 5.7791 12 1 0.6527 -0.7204 5.4697 13 6 1.8365 -0.1231 7.1426 14 1 2.6624 -0.3985 7.7817 15 6 0.9094 0.8015 7.5744 16 7 0.9737 1.2745 8.7999 17 14 -0.4382 1.3826 6.4186 18 1 -1.6640 0.5745 6.6413 19 1 -0.7339 2.8138 6.6828 20 1 0.0120 1.2217 5.0126 21 6 2.5565 0.0275 4.7698 22 6 2.0400 -0.7213 -1.2492 23 9 1.5737 -2.0403 -1.2492 24 9 1.5736 -0.0619 -2.3916 25 9 3.4390 -0.7208 -1.2495 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 2.2490 -1.6317 1.1527 30 1 2.6656 -2.4909 2.4358 31 1 3.9148 -2.2215 3.6767 32 1 0.9548 -2.8008 4.1603 33 1 2.3201 -3.8913 4.5026 34 1 1.5842 -2.7509 6.5683 35 1 3.2255 -2.2295 6.1189 36 1 0.3211 1.9248 9.1037 37 1 3.5870 0.0733 5.1219 38 1 2.1626 1.0372 4.6535 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595638140.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:33:39 Heat of formation + Delta-G solvation = -207.676571 kcal Electronic energy + Delta-G solvation = -25075.026937 eV Core-core repulsion = 20922.438220 eV Total energy + Delta-G solvation = -4152.588717 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -51.23797 -48.72528 -48.70626 -41.55963 -38.82578 -36.79761 -35.30127 -33.74284 -32.30075 -31.55429 -27.55945 -27.05989 -26.18266 -23.41211 -23.22425 -21.76293 -20.76565 -19.81982 -19.51959 -19.47865 -18.89828 -18.14703 -17.22915 -16.65138 -16.36335 -15.82529 -15.62851 -15.42981 -15.28097 -15.24716 -15.11664 -14.86421 -14.85717 -14.79313 -14.54461 -14.39041 -14.03055 -13.83032 -13.60723 -13.11231 -13.08069 -12.74434 -12.56825 -12.40356 -12.03215 -11.77165 -11.63610 -11.39735 -11.09914 -10.97357 -10.77366 -10.55640 -9.48984 -8.33602 -6.35665 1.21213 1.26864 1.34810 1.47092 1.62194 2.01855 2.30347 2.56768 2.66539 2.92608 3.05327 3.17865 3.83912 3.95317 3.96630 4.13062 4.16836 4.45600 4.48767 4.58472 4.65076 4.68360 4.77970 4.97166 5.02272 5.06947 5.08862 5.13884 5.24112 5.41944 5.59341 5.63834 5.69579 5.88596 6.30606 6.73213 6.84412 7.31023 7.40496 8.82879 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.023974 B = 0.004589 C = 0.004180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.655615 B = 6099.948184 C = 6696.676350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.120 3.880 3 H 0.121 0.879 4 N -0.731 5.731 5 C 0.707 3.293 6 O -0.630 6.630 7 N -0.624 5.624 8 C 0.109 3.891 9 C -0.127 4.127 10 C -0.102 4.102 11 C 0.006 3.994 12 H 0.024 0.976 13 C -0.510 4.510 14 H 0.043 0.957 15 C 0.023 3.977 16 N -0.943 5.943 17 Si 0.930 3.070 18 H -0.268 1.268 19 H -0.291 1.291 20 H -0.256 1.256 21 C 0.141 3.859 22 C 0.460 3.540 23 F -0.174 7.174 24 F -0.171 7.171 25 F -0.182 7.182 26 H 0.098 0.902 27 H 0.083 0.917 28 H 0.062 0.938 29 H 0.413 0.587 30 H 0.101 0.899 31 H 0.085 0.915 32 H 0.059 0.941 33 H 0.105 0.895 34 H 0.052 0.948 35 H 0.057 0.943 36 H 0.266 0.734 37 H 0.060 0.940 38 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.170 -10.000 -22.501 24.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.012 3.988 3 H 0.139 0.861 4 N -0.392 5.392 5 C 0.408 3.592 6 O -0.511 6.511 7 N -0.359 5.359 8 C -0.013 4.013 9 C -0.165 4.165 10 C -0.139 4.139 11 C -0.014 4.014 12 H 0.042 0.958 13 C -0.548 4.548 14 H 0.061 0.939 15 C -0.176 4.176 16 N -0.582 5.582 17 Si 0.756 3.244 18 H -0.194 1.194 19 H -0.217 1.217 20 H -0.180 1.180 21 C 0.017 3.983 22 C 0.405 3.595 23 F -0.156 7.156 24 F -0.153 7.153 25 F -0.163 7.163 26 H 0.117 0.883 27 H 0.102 0.898 28 H 0.081 0.919 29 H 0.253 0.747 30 H 0.119 0.881 31 H 0.104 0.896 32 H 0.078 0.922 33 H 0.123 0.877 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.960 -9.061 -22.367 24.152 hybrid contribution -0.393 0.367 0.085 0.545 sum 0.567 -8.694 -22.282 23.925 Atomic orbital electron populations 1.22236 0.90798 1.04774 1.04569 1.21919 0.97962 0.98319 0.80597 0.86102 1.44856 1.72493 1.14242 1.07590 1.15874 0.77824 0.84567 0.80897 1.90891 1.60085 1.14702 1.85388 1.47637 1.70110 1.11888 1.06253 1.21938 1.00354 0.78284 1.00734 1.21945 1.00131 1.00289 0.94153 1.21456 1.00800 0.94844 0.96845 1.19523 0.95003 0.94471 0.92381 0.95771 1.21227 1.10534 1.23038 1.00045 0.93864 1.25781 0.99820 0.96139 0.95816 1.70028 1.37997 1.32055 1.18160 0.85991 0.80159 0.77502 0.80770 1.19354 1.21742 1.18018 1.21961 1.00154 0.95835 0.80301 1.20420 0.75478 0.77792 0.85782 1.93201 1.88315 1.37339 1.96717 1.93213 1.88403 1.80721 1.52927 1.93223 1.29982 1.96369 1.96763 0.88303 0.89764 0.91855 0.74690 0.88120 0.89642 0.92241 0.87695 0.92931 0.92468 0.92522 0.92135 0.93203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.99 9.24 71.98 0.67 -2.32 16 2 C 0.12 2.42 2.60 44.99 0.12 2.53 16 3 H 0.12 2.77 7.50 -2.39 -0.02 2.75 16 4 N -0.73 -16.83 4.89 -457.83 -2.24 -19.07 16 5 C 0.71 23.63 8.27 179.06 1.48 25.11 16 6 O -0.63 -26.83 15.40 -4.00 -0.06 -26.89 16 7 N -0.62 -20.48 2.97 -836.04 -2.48 -22.96 16 8 C 0.11 2.42 6.43 86.36 0.56 2.97 16 9 C -0.13 -3.04 6.08 30.67 0.19 -2.85 16 10 C -0.10 -3.51 5.15 30.62 0.16 -3.35 16 11 C 0.01 0.27 1.79 -11.32 -0.02 0.25 16 12 H 0.02 1.12 5.59 -2.39 -0.01 1.10 16 13 C -0.51 -28.14 8.86 25.60 0.23 -27.91 16 14 H 0.04 2.60 8.06 -2.91 -0.02 2.58 16 15 C 0.02 1.31 5.47 84.65 0.46 1.77 16 16 N -0.94 -58.53 13.96 21.45 0.30 -58.23 16 17 Si 0.93 46.12 26.64 68.60 1.83 47.95 16 18 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 19 H -0.29 -14.49 7.11 99.48 0.71 -13.78 16 20 H -0.26 -12.69 6.01 99.48 0.60 -12.09 16 21 C 0.14 5.89 5.53 86.51 0.48 6.37 16 22 C 0.46 7.87 2.75 71.98 0.20 8.07 16 23 F -0.17 -2.76 16.44 44.97 0.74 -2.02 16 24 F -0.17 -2.90 16.80 44.97 0.76 -2.15 16 25 F -0.18 -3.50 17.24 44.97 0.78 -2.73 16 26 H 0.10 1.38 7.80 -2.39 -0.02 1.36 16 27 H 0.08 1.29 7.80 -2.38 -0.02 1.28 16 28 H 0.06 1.49 8.14 -2.39 -0.02 1.48 16 29 H 0.41 7.09 5.77 -92.71 -0.53 6.56 16 30 H 0.10 1.50 5.57 -2.39 -0.01 1.49 16 31 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.10 1.78 8.14 -2.38 -0.02 1.76 16 34 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.06 1.93 8.14 -2.38 -0.02 1.92 16 36 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 37 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 38 H 0.05 2.43 5.97 -2.39 -0.01 2.41 16 Total: -1.00 -70.91 316.08 4.57 -66.34 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: 0.45 Total: 9.11 kcal Atomic # 6 Polarization: 6.14 SS G_CDS: 4.51 Total: 10.65 kcal Atomic # 7 Polarization: -95.84 SS G_CDS: -4.42 Total: -100.26 kcal Atomic # 8 Polarization: -26.83 SS G_CDS: -0.06 Total: -26.89 kcal Atomic # 9 Polarization: -9.16 SS G_CDS: 2.27 Total: -6.89 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 1.83 Total: 47.95 kcal Total: -70.91 4.57 -66.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595638140.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.338 kcal (2) G-P(sol) polarization free energy of solvation -70.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds