Wall clock time and date at job start Tue Mar 31 2020 07:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47093 * 2 1 4 4 N 1.46503 * 109.46796 * 239.99747 * 2 1 3 5 5 C 1.34775 * 119.99866 * 85.00538 * 4 2 1 6 6 O 1.21586 * 119.99972 * 355.01302 * 5 4 2 7 7 N 1.34776 * 120.00014 * 175.01819 * 5 4 2 8 8 C 1.46931 * 120.62944 * 4.93883 * 7 5 4 9 9 C 1.53629 * 108.54035 * 126.36861 * 8 7 5 10 10 C 1.53035 * 109.24328 * 54.85667 * 9 8 7 11 11 C 1.53037 * 109.54014 * 298.51100 * 10 9 8 12 12 H 1.08999 * 109.49398 * 301.41582 * 11 10 9 13 13 C 1.50697 * 109.52671 * 181.33001 * 11 10 9 14 14 H 1.08002 * 120.00046 * 0.14554 * 13 11 10 15 15 C 1.37881 * 120.00260 * 180.14106 * 13 11 10 16 16 N 1.31520 * 119.99646 * 0.02562 * 15 13 11 17 17 Si 1.86793 * 120.00344 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47167 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47336 * 120.00368 * 17 15 13 20 20 H 1.48500 * 109.47216 * 240.00328 * 17 15 13 21 21 C 1.46924 * 120.63100 * 185.22165 * 7 5 4 22 22 C 1.52998 * 109.46941 * 119.99867 * 2 1 3 23 23 F 1.39901 * 109.47195 * 60.00164 * 22 2 1 24 24 F 1.39905 * 109.47013 * 179.97438 * 22 2 1 25 25 F 1.39899 * 109.47369 * 300.00040 * 22 2 1 26 26 H 1.08998 * 109.47160 * 60.00233 * 1 2 3 27 27 H 1.08998 * 109.47546 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46892 * 300.00152 * 1 2 3 29 29 H 0.96994 * 119.99968 * 265.00035 * 4 2 1 30 30 H 1.09000 * 109.58374 * 246.19980 * 8 7 5 31 31 H 1.08995 * 109.58614 * 6.62857 * 8 7 5 32 32 H 1.08993 * 109.63490 * 294.86546 * 9 8 7 33 33 H 1.09005 * 109.42867 * 174.72204 * 9 8 7 34 34 H 1.08992 * 109.46244 * 178.48802 * 10 9 8 35 35 H 1.09006 * 109.44689 * 58.51679 * 10 9 8 36 36 H 0.97000 * 119.99572 * 179.97438 * 16 15 13 37 37 H 1.09001 * 109.58583 * 353.37067 * 21 7 5 38 38 H 1.08992 * 109.58884 * 113.65830 * 21 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1470 -0.0184 -2.3571 6 8 1.7733 1.1360 -2.4358 7 7 2.6900 -0.6256 -3.4309 8 6 3.0468 -2.0501 -3.3845 9 6 2.3733 -2.7612 -4.5681 10 6 2.7660 -2.0574 -5.8690 11 6 2.2748 -0.6084 -5.8354 12 1 1.1929 -0.5940 -5.7036 13 6 2.6330 0.0750 -7.1299 14 1 3.1566 -0.4700 -7.9014 15 6 2.2921 1.3960 -7.3295 16 7 1.6549 2.0598 -6.3898 17 14 2.7355 2.2429 -8.9343 18 1 3.4439 1.2847 -9.8204 19 1 1.4966 2.7132 -9.6045 20 1 3.6179 3.4039 -8.6540 21 6 2.9420 0.1258 -4.6680 22 6 2.0399 -0.7212 1.2493 23 9 1.5736 -2.0402 1.2493 24 9 3.4390 -0.7217 1.2490 25 9 1.5736 -0.0617 2.3915 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 2.2489 -1.6318 -1.1526 30 1 4.1289 -2.1583 -3.4574 31 1 2.6963 -2.4843 -2.4482 32 1 1.2905 -2.7266 -4.4482 33 1 2.7030 -3.7997 -4.6024 34 1 2.3116 -2.5753 -6.7136 35 1 3.8507 -2.0707 -5.9757 36 1 1.4154 2.9893 -6.5300 37 1 2.5223 1.1279 -4.5789 38 1 4.0157 0.1936 -4.8421 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595638141.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:33:43 Heat of formation + Delta-G solvation = -187.047823 kcal Electronic energy + Delta-G solvation = -25011.999788 eV Core-core repulsion = 20860.305601 eV Total energy + Delta-G solvation = -4151.694187 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.32075 -47.82779 -47.77793 -39.93852 -37.19644 -35.34257 -33.47679 -31.96179 -30.62266 -29.58988 -26.55849 -25.10394 -24.55932 -22.16092 -21.82587 -20.32781 -19.32053 -18.62630 -18.53830 -18.12064 -16.96930 -16.16700 -15.85537 -15.00945 -14.79185 -14.62794 -14.52980 -14.23195 -14.05498 -13.94631 -13.94412 -13.77450 -13.57858 -13.42657 -12.87749 -12.71425 -12.60051 -12.14868 -12.11484 -11.89583 -11.40138 -11.01926 -10.93147 -10.52190 -10.43251 -10.25608 -9.91415 -9.60850 -9.15930 -9.12579 -8.97685 -8.44117 -7.74595 -5.99932 -4.08940 2.38754 2.84253 3.30052 3.38530 3.41355 3.50376 3.62966 3.89696 4.01461 4.26527 4.43478 4.86825 4.96581 5.19802 5.30064 5.43904 5.45782 5.56405 5.63921 5.93271 6.07271 6.12300 6.28166 6.38777 6.51110 6.61733 6.74426 6.94588 6.97423 7.27298 7.36965 7.69931 7.89031 8.02549 8.38694 8.40955 8.94608 9.06011 9.56841 11.05079 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.026460 B = 0.004099 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.934105 B = 6829.677267 C = 7430.180111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.127 3.873 3 H 0.128 0.872 4 N -0.752 5.752 5 C 0.706 3.294 6 O -0.574 6.574 7 N -0.617 5.617 8 C 0.113 3.887 9 C -0.133 4.133 10 C -0.110 4.110 11 C 0.039 3.961 12 H 0.029 0.971 13 C -0.521 4.521 14 H 0.059 0.941 15 C 0.063 3.937 16 N -0.879 5.879 17 Si 0.892 3.108 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C 0.128 3.872 22 C 0.446 3.554 23 F -0.181 7.181 24 F -0.178 7.178 25 F -0.176 7.176 26 H 0.091 0.909 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.397 0.603 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.051 0.949 35 H 0.050 0.950 36 H 0.263 0.737 37 H 0.124 0.876 38 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.492 -8.407 14.440 16.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.019 3.981 3 H 0.146 0.854 4 N -0.413 5.413 5 C 0.408 3.592 6 O -0.451 6.451 7 N -0.353 5.353 8 C -0.011 4.011 9 C -0.171 4.171 10 C -0.148 4.148 11 C 0.020 3.980 12 H 0.047 0.953 13 C -0.560 4.560 14 H 0.077 0.923 15 C -0.140 4.140 16 N -0.516 5.516 17 Si 0.719 3.281 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.210 1.210 21 C 0.007 3.993 22 C 0.391 3.609 23 F -0.163 7.163 24 F -0.160 7.160 25 F -0.157 7.157 26 H 0.110 0.890 27 H 0.087 0.913 28 H 0.094 0.906 29 H 0.234 0.766 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.142 0.858 38 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 0.186 -7.357 14.404 16.175 hybrid contribution 0.457 -0.212 -0.523 0.727 sum 0.643 -7.570 13.881 15.823 Atomic orbital electron populations 1.22264 0.91936 1.03762 1.04812 1.21770 0.97190 0.98369 0.80819 0.85390 1.45173 1.73889 1.13756 1.08486 1.15793 0.78953 0.84680 0.79783 1.90953 1.54789 1.16267 1.83051 1.47804 1.63885 1.09905 1.13743 1.21635 0.99471 0.82021 0.97961 1.22018 1.00544 0.98149 0.96397 1.21618 1.00083 0.98611 0.94480 1.18988 0.96323 0.89263 0.93417 0.95267 1.21112 1.38190 0.96250 1.00409 0.92307 1.25059 0.94771 0.97597 0.96604 1.69905 1.38969 1.10227 1.32527 0.86544 0.78177 0.79561 0.83776 1.19799 1.21028 1.20972 1.22261 0.98527 0.99176 0.79305 1.20857 0.75792 0.77791 0.86452 1.93177 1.88440 1.37911 1.96772 1.93219 1.29633 1.96347 1.96771 1.93191 1.88474 1.80722 1.53341 0.89042 0.91331 0.90625 0.76613 0.91810 0.92210 0.92096 0.92232 0.92986 0.93145 0.92707 0.85769 0.94024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.91 9.24 37.16 0.34 -1.57 16 2 C 0.13 1.58 2.51 -67.93 -0.17 1.41 16 3 H 0.13 1.70 7.65 -51.93 -0.40 1.30 16 4 N -0.75 -10.76 4.89 -58.68 -0.29 -11.05 16 5 C 0.71 13.69 8.26 -86.92 -0.72 12.97 16 6 O -0.57 -13.54 15.43 5.29 0.08 -13.45 16 7 N -0.62 -12.01 2.97 -178.23 -0.53 -12.54 16 8 C 0.11 1.69 6.42 -3.48 -0.02 1.67 16 9 C -0.13 -2.06 6.10 -26.39 -0.16 -2.22 16 10 C -0.11 -2.13 5.11 -26.69 -0.14 -2.27 16 11 C 0.04 0.95 2.25 -91.65 -0.21 0.75 16 12 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 13 C -0.52 -13.90 8.57 -34.44 -0.29 -14.20 16 14 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 15 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 16 N -0.88 -25.34 11.39 55.43 0.63 -24.71 16 17 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 18 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 C 0.13 3.02 5.41 -3.71 -0.02 3.00 16 22 C 0.45 4.92 2.75 37.16 0.10 5.03 16 23 F -0.18 -1.95 16.44 2.25 0.04 -1.91 16 24 F -0.18 -2.14 17.24 2.25 0.04 -2.11 16 25 F -0.18 -1.89 16.80 2.25 0.04 -1.85 16 26 H 0.09 1.26 8.10 -51.93 -0.42 0.84 16 27 H 0.07 0.71 7.80 -51.93 -0.41 0.30 16 28 H 0.07 0.70 7.80 -51.93 -0.41 0.30 16 29 H 0.40 4.81 5.80 -40.82 -0.24 4.57 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.06 0.71 5.64 -51.93 -0.29 0.42 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 37 H 0.12 3.46 5.11 -51.93 -0.27 3.19 16 38 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 318.85 15.07 4.81 4.81 Total: -1.00 -30.21 318.85 -6.51 -36.72 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -4.92 Total: 3.90 kcal Atomic # 6 Polarization: 7.56 SS G_CDS: -1.38 Total: 6.18 kcal Atomic # 7 Polarization: -48.11 SS G_CDS: -0.18 Total: -48.29 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: 0.08 Total: -13.45 kcal Atomic # 9 Polarization: -5.98 SS G_CDS: 0.11 Total: -5.87 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.21 -6.51 -36.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595638141.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.328 kcal (2) G-P(sol) polarization free energy of solvation -30.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds