Wall clock time and date at job start Tue Mar 31 2020 07:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47093 * 2 1 4 4 N 1.46503 * 109.46796 * 239.99747 * 2 1 3 5 5 C 1.34775 * 119.99866 * 85.00538 * 4 2 1 6 6 O 1.21586 * 119.99972 * 355.01302 * 5 4 2 7 7 N 1.34776 * 120.00014 * 175.01819 * 5 4 2 8 8 C 1.46931 * 120.62944 * 4.93883 * 7 5 4 9 9 C 1.53629 * 108.54035 * 126.36861 * 8 7 5 10 10 C 1.53035 * 109.24328 * 54.85667 * 9 8 7 11 11 C 1.53037 * 109.54014 * 298.51100 * 10 9 8 12 12 H 1.08999 * 109.49398 * 301.41582 * 11 10 9 13 13 C 1.50697 * 109.52671 * 181.33001 * 11 10 9 14 14 H 1.08002 * 120.00046 * 0.14554 * 13 11 10 15 15 C 1.37881 * 120.00260 * 180.14106 * 13 11 10 16 16 N 1.31520 * 119.99646 * 0.02562 * 15 13 11 17 17 Si 1.86793 * 120.00344 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47167 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47336 * 120.00368 * 17 15 13 20 20 H 1.48500 * 109.47216 * 240.00328 * 17 15 13 21 21 C 1.46924 * 120.63100 * 185.22165 * 7 5 4 22 22 C 1.52998 * 109.46941 * 119.99867 * 2 1 3 23 23 F 1.39901 * 109.47195 * 60.00164 * 22 2 1 24 24 F 1.39905 * 109.47013 * 179.97438 * 22 2 1 25 25 F 1.39899 * 109.47369 * 300.00040 * 22 2 1 26 26 H 1.08998 * 109.47160 * 60.00233 * 1 2 3 27 27 H 1.08998 * 109.47546 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46892 * 300.00152 * 1 2 3 29 29 H 0.96994 * 119.99968 * 265.00035 * 4 2 1 30 30 H 1.09000 * 109.58374 * 246.19980 * 8 7 5 31 31 H 1.08995 * 109.58614 * 6.62857 * 8 7 5 32 32 H 1.08993 * 109.63490 * 294.86546 * 9 8 7 33 33 H 1.09005 * 109.42867 * 174.72204 * 9 8 7 34 34 H 1.08992 * 109.46244 * 178.48802 * 10 9 8 35 35 H 1.09006 * 109.44689 * 58.51679 * 10 9 8 36 36 H 0.97000 * 119.99572 * 179.97438 * 16 15 13 37 37 H 1.09001 * 109.58583 * 353.37067 * 21 7 5 38 38 H 1.08992 * 109.58884 * 113.65830 * 21 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1470 -0.0184 -2.3571 6 8 1.7733 1.1360 -2.4358 7 7 2.6900 -0.6256 -3.4309 8 6 3.0468 -2.0501 -3.3845 9 6 2.3733 -2.7612 -4.5681 10 6 2.7660 -2.0574 -5.8690 11 6 2.2748 -0.6084 -5.8354 12 1 1.1929 -0.5940 -5.7036 13 6 2.6330 0.0750 -7.1299 14 1 3.1566 -0.4700 -7.9014 15 6 2.2921 1.3960 -7.3295 16 7 1.6549 2.0598 -6.3898 17 14 2.7355 2.2429 -8.9343 18 1 3.4439 1.2847 -9.8204 19 1 1.4966 2.7132 -9.6045 20 1 3.6179 3.4039 -8.6540 21 6 2.9420 0.1258 -4.6680 22 6 2.0399 -0.7212 1.2493 23 9 1.5736 -2.0402 1.2493 24 9 3.4390 -0.7217 1.2490 25 9 1.5736 -0.0617 2.3915 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 2.2489 -1.6318 -1.1526 30 1 4.1289 -2.1583 -3.4574 31 1 2.6963 -2.4843 -2.4482 32 1 1.2905 -2.7266 -4.4482 33 1 2.7030 -3.7997 -4.6024 34 1 2.3116 -2.5753 -6.7136 35 1 3.8507 -2.0707 -5.9757 36 1 1.4154 2.9893 -6.5300 37 1 2.5223 1.1279 -4.5789 38 1 4.0157 0.1936 -4.8421 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595638141.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:33:42 Heat of formation + Delta-G solvation = -205.941691 kcal Electronic energy + Delta-G solvation = -25012.819087 eV Core-core repulsion = 20860.305601 eV Total energy + Delta-G solvation = -4152.513487 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -51.22728 -48.71499 -48.69209 -41.42778 -38.71067 -36.69955 -35.31984 -33.61511 -31.96609 -31.20650 -27.52480 -27.00492 -26.07583 -23.53170 -23.15526 -21.77743 -20.76436 -19.67863 -19.49695 -19.38140 -18.48265 -17.91393 -17.16518 -16.55342 -16.40026 -15.82282 -15.59732 -15.27760 -15.21887 -15.14127 -15.10786 -14.85051 -14.83741 -14.58892 -14.44990 -14.27877 -13.95952 -13.60003 -13.50400 -13.04324 -12.89812 -12.64078 -12.38980 -12.26817 -12.19995 -11.86145 -11.62376 -11.28348 -10.95086 -10.83834 -10.51978 -10.47613 -9.33897 -8.08457 -6.25365 1.27683 1.41697 1.43475 1.54928 1.68282 2.12329 2.43441 2.58330 2.78485 2.94234 3.19138 3.22499 3.87610 3.96600 4.01658 4.14668 4.29182 4.51882 4.61341 4.66413 4.73927 4.80963 4.85671 5.11289 5.12124 5.17239 5.25044 5.29341 5.33119 5.57414 5.61974 5.85455 5.95733 6.09647 6.37101 6.87613 6.97476 7.44462 7.54555 8.94831 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.026460 B = 0.004099 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.934105 B = 6829.677267 C = 7430.180111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.122 3.878 3 H 0.117 0.883 4 N -0.732 5.732 5 C 0.703 3.297 6 O -0.625 6.625 7 N -0.623 5.623 8 C 0.108 3.892 9 C -0.125 4.125 10 C -0.105 4.105 11 C 0.038 3.962 12 H -0.014 1.014 13 C -0.535 4.535 14 H 0.062 0.938 15 C 0.011 3.989 16 N -0.914 5.914 17 Si 0.956 3.044 18 H -0.261 1.261 19 H -0.284 1.284 20 H -0.283 1.283 21 C 0.142 3.858 22 C 0.461 3.539 23 F -0.174 7.174 24 F -0.182 7.182 25 F -0.170 7.170 26 H 0.061 0.939 27 H 0.082 0.918 28 H 0.098 0.902 29 H 0.411 0.589 30 H 0.083 0.917 31 H 0.098 0.902 32 H 0.050 0.950 33 H 0.104 0.896 34 H 0.051 0.949 35 H 0.058 0.942 36 H 0.259 0.741 37 H 0.079 0.921 38 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.314 -10.685 15.352 18.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.014 3.986 3 H 0.135 0.865 4 N -0.393 5.393 5 C 0.405 3.595 6 O -0.505 6.505 7 N -0.359 5.359 8 C -0.015 4.015 9 C -0.163 4.163 10 C -0.143 4.143 11 C 0.018 3.982 12 H 0.005 0.995 13 C -0.573 4.573 14 H 0.080 0.920 15 C -0.189 4.189 16 N -0.552 5.552 17 Si 0.782 3.218 18 H -0.185 1.185 19 H -0.210 1.210 20 H -0.209 1.209 21 C 0.020 3.980 22 C 0.406 3.594 23 F -0.156 7.156 24 F -0.163 7.163 25 F -0.152 7.152 26 H 0.081 0.919 27 H 0.101 0.899 28 H 0.116 0.884 29 H 0.250 0.750 30 H 0.101 0.899 31 H 0.116 0.884 32 H 0.069 0.931 33 H 0.122 0.878 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.068 0.932 37 H 0.097 0.903 38 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 1.019 -9.713 15.350 18.194 hybrid contribution 0.180 0.469 -0.767 0.917 sum 1.200 -9.244 14.583 17.308 Atomic orbital electron populations 1.22210 0.90886 1.04601 1.04502 1.21885 0.98044 0.98011 0.80677 0.86519 1.44857 1.72874 1.14134 1.07465 1.15929 0.78549 0.84208 0.80816 1.90921 1.56769 1.18742 1.84050 1.47688 1.63958 1.11731 1.12492 1.21993 1.00819 0.79002 0.99642 1.21975 1.00096 1.00081 0.94166 1.21508 1.00318 0.95467 0.97003 1.18919 0.93789 0.92677 0.92769 0.99535 1.21548 1.37609 0.96590 1.01595 0.92014 1.25871 0.94787 0.98491 0.99711 1.70099 1.40418 1.10203 1.34505 0.85536 0.77821 0.78498 0.79990 1.18483 1.20979 1.20876 1.21641 0.97496 0.97632 0.81272 1.20394 0.75467 0.77779 0.85731 1.93198 1.88326 1.37318 1.96719 1.93220 1.29969 1.96370 1.96760 1.93209 1.88394 1.80716 1.52855 0.91943 0.89879 0.88353 0.74955 0.89878 0.88446 0.93088 0.87786 0.93043 0.92340 0.93173 0.90314 0.94437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.51 9.24 71.98 0.67 -2.85 16 2 C 0.12 2.88 2.51 44.99 0.11 2.99 16 3 H 0.12 3.10 7.65 -2.39 -0.02 3.08 16 4 N -0.73 -19.92 4.89 -457.82 -2.24 -22.16 16 5 C 0.70 27.48 8.26 179.06 1.48 28.95 16 6 O -0.62 -30.83 15.43 -3.99 -0.06 -30.89 16 7 N -0.62 -24.12 2.97 -836.05 -2.48 -26.60 16 8 C 0.11 2.89 6.42 86.51 0.56 3.44 16 9 C -0.13 -3.51 6.10 30.82 0.19 -3.32 16 10 C -0.11 -3.94 5.11 30.62 0.16 -3.78 16 11 C 0.04 1.88 2.25 -11.46 -0.03 1.85 16 12 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 13 C -0.53 -29.13 8.57 25.60 0.22 -28.91 16 14 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 15 C 0.01 0.61 5.30 84.65 0.45 1.06 16 16 N -0.91 -55.16 11.39 21.45 0.24 -54.91 16 17 Si 0.96 43.96 29.54 68.60 2.03 45.99 16 18 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 19 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 20 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 21 C 0.14 6.96 5.41 86.37 0.47 7.43 16 22 C 0.46 9.08 2.75 71.98 0.20 9.28 16 23 F -0.17 -3.16 16.44 44.97 0.74 -2.43 16 24 F -0.18 -3.95 17.24 44.97 0.78 -3.17 16 25 F -0.17 -3.25 16.80 44.97 0.76 -2.50 16 26 H 0.06 1.74 8.10 -2.39 -0.02 1.73 16 27 H 0.08 1.53 7.80 -2.39 -0.02 1.51 16 28 H 0.10 1.65 7.80 -2.39 -0.02 1.63 16 29 H 0.41 8.71 5.80 -92.71 -0.54 8.17 16 30 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.10 1.89 5.64 -2.39 -0.01 1.87 16 32 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.10 2.09 8.14 -2.38 -0.02 2.07 16 34 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 36 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 37 H 0.08 4.64 5.11 -2.39 -0.01 4.63 16 38 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -69.71 318.85 4.78 -64.94 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: 0.55 Total: 15.60 kcal Atomic # 6 Polarization: 11.67 SS G_CDS: 4.46 Total: 16.13 kcal Atomic # 7 Polarization: -99.20 SS G_CDS: -4.47 Total: -103.68 kcal Atomic # 8 Polarization: -30.83 SS G_CDS: -0.06 Total: -30.89 kcal Atomic # 9 Polarization: -10.36 SS G_CDS: 2.27 Total: -8.09 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -69.71 4.78 -64.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595638141.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.006 kcal (2) G-P(sol) polarization free energy of solvation -69.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds