Wall clock time and date at job start Tue Mar 31 2020 07:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47331 * 2 1 4 4 C 1.53004 * 109.47223 * 239.99760 * 2 1 3 5 5 C 1.50696 * 109.46978 * 65.00548 * 4 2 1 6 6 O 1.21282 * 120.00083 * 359.97438 * 5 4 2 7 7 N 1.34777 * 119.99905 * 180.02562 * 5 4 2 8 8 C 1.46967 * 120.59439 * 179.97438 * 7 5 4 9 9 C 1.53374 * 108.63231 * 235.20661 * 8 7 5 10 10 N 1.46972 * 108.63217 * 310.57203 * 9 8 7 11 11 C 1.36935 * 120.59045 * 235.20705 * 10 9 8 12 12 H 1.08002 * 119.99725 * 151.84492 * 11 10 9 13 13 C 1.38804 * 120.00405 * 331.57419 * 11 10 9 14 14 N 1.31622 * 119.99787 * 342.82520 * 13 11 10 15 15 Si 1.86800 * 120.00346 * 162.82771 * 13 11 10 16 16 H 1.48493 * 109.47374 * 89.99790 * 15 13 11 17 17 H 1.48496 * 109.47349 * 210.00137 * 15 13 11 18 18 H 1.48504 * 109.47003 * 329.99893 * 15 13 11 19 19 C 1.46962 * 118.81330 * 55.48066 * 10 9 8 20 20 C 1.46958 * 120.59449 * 359.97334 * 7 5 4 21 21 C 1.53009 * 109.46956 * 119.99984 * 2 1 3 22 22 F 1.39899 * 109.47039 * 179.97438 * 21 2 1 23 23 F 1.39899 * 109.46958 * 300.00058 * 21 2 1 24 24 F 1.39899 * 109.46897 * 59.99728 * 21 2 1 25 25 H 1.09001 * 109.47331 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46987 * 300.00412 * 1 2 3 27 27 H 1.09006 * 109.46890 * 60.00073 * 1 2 3 28 28 H 1.08997 * 109.47072 * 304.99717 * 4 2 1 29 29 H 1.09005 * 109.46717 * 185.00278 * 4 2 1 30 30 H 1.08996 * 109.60899 * 115.45556 * 8 7 5 31 31 H 1.09001 * 109.60456 * 354.94534 * 8 7 5 32 32 H 1.09002 * 109.60640 * 190.83592 * 9 8 7 33 33 H 1.08999 * 109.75615 * 70.39807 * 9 8 7 34 34 H 0.96999 * 119.99847 * 179.97438 * 14 13 11 35 35 H 1.08998 * 109.60973 * 64.26416 * 19 10 9 36 36 H 1.08995 * 109.61395 * 184.77560 * 19 10 9 37 37 H 1.09002 * 109.60988 * 244.54275 * 20 7 5 38 38 H 1.09006 * 109.61277 * 4.88162 * 20 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6415 0.0570 -2.4765 6 8 1.0111 1.0869 -2.3633 7 7 1.9846 -0.3920 -3.7001 8 6 1.6023 0.3563 -4.9059 9 6 0.8278 -0.5819 -5.8398 10 7 1.5916 -1.8283 -5.9922 11 6 1.9402 -2.2844 -7.2354 12 1 2.8284 -2.8860 -7.3604 13 6 1.1490 -1.9784 -8.3341 14 7 -0.0850 -1.5552 -8.1590 15 14 1.8355 -2.1672 -10.0611 16 1 1.5586 -3.5393 -10.5566 17 1 1.1916 -1.1767 -10.9607 18 1 3.3022 -1.9355 -10.0388 19 6 1.9691 -2.5795 -4.7868 20 6 2.7478 -1.6386 -3.8525 21 6 2.0400 -0.7213 1.2493 22 9 3.4390 -0.7218 1.2491 23 9 1.5736 -0.0618 2.3916 24 9 1.5736 -2.0402 1.2493 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.6055 -1.7199 -1.2951 29 1 3.1264 -0.7995 -1.2055 30 1 2.4977 0.7182 -5.4110 31 1 0.9700 1.1995 -4.6278 32 1 0.7033 -0.1079 -6.8135 33 1 -0.1504 -0.8022 -5.4124 34 1 -0.6377 -1.3410 -8.9268 35 1 1.0715 -2.9383 -4.2833 36 1 2.5984 -3.4250 -5.0647 37 1 3.7250 -1.4190 -4.2826 38 1 2.8747 -2.1113 -2.8785 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599538610.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:32:34 Heat of formation + Delta-G solvation = -170.014347 kcal Electronic energy + Delta-G solvation = -24763.950360 eV Core-core repulsion = 20612.994800 eV Total energy + Delta-G solvation = -4150.955560 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.26250 -47.74858 -47.71662 -39.92432 -37.11771 -35.05708 -33.99543 -31.26038 -30.62325 -28.31899 -26.72645 -26.30373 -23.72140 -22.93008 -21.70868 -20.40195 -18.96527 -18.58976 -18.27148 -17.81683 -16.77267 -16.00528 -15.81895 -15.28777 -14.83144 -14.73485 -14.62939 -14.16567 -14.02997 -13.88956 -13.86836 -13.75934 -13.63306 -13.35702 -13.15094 -13.09772 -12.70089 -12.18712 -11.89078 -11.48601 -11.43063 -11.36014 -11.23492 -10.84762 -10.78277 -10.62198 -10.31219 -10.01869 -9.91197 -9.46542 -8.64691 -8.32884 -6.77157 -5.89896 -3.35412 2.56126 2.82140 3.25351 3.31217 3.39032 3.40770 3.68247 3.89172 3.91596 4.40016 4.53235 4.70114 4.77065 5.04194 5.20403 5.27876 5.35715 5.39593 5.62326 5.67241 5.69883 5.78660 5.81937 6.06123 6.18142 6.25731 6.31983 6.42523 6.62660 6.78258 7.18384 7.48213 7.67719 7.79116 8.31111 8.41162 9.06902 9.69572 10.25906 11.17627 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.037353 B = 0.003475 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.424223 B = 8056.402381 C = 8319.558497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.116 4.116 3 H 0.121 0.879 4 C -0.143 4.143 5 C 0.515 3.485 6 O -0.553 6.553 7 N -0.593 5.593 8 C 0.087 3.913 9 C 0.158 3.842 10 N -0.591 5.591 11 C -0.260 4.260 12 H 0.068 0.932 13 C 0.005 3.995 14 N -0.900 5.900 15 Si 0.904 3.096 16 H -0.286 1.286 17 H -0.289 1.289 18 H -0.278 1.278 19 C 0.130 3.870 20 C 0.086 3.914 21 C 0.453 3.547 22 F -0.185 7.185 23 F -0.183 7.183 24 F -0.182 7.182 25 H 0.063 0.937 26 H 0.065 0.935 27 H 0.100 0.900 28 H 0.106 0.894 29 H 0.102 0.898 30 H 0.061 0.939 31 H 0.081 0.919 32 H 0.100 0.900 33 H 0.024 0.976 34 H 0.256 0.744 35 H 0.024 0.976 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.621 1.533 16.258 16.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.136 4.136 3 H 0.139 0.861 4 C -0.183 4.183 5 C 0.303 3.697 6 O -0.432 6.432 7 N -0.325 5.325 8 C -0.036 4.036 9 C 0.032 3.968 10 N -0.314 5.314 11 C -0.389 4.389 12 H 0.085 0.915 13 C -0.194 4.194 14 N -0.544 5.544 15 Si 0.733 3.267 16 H -0.213 1.213 17 H -0.215 1.215 18 H -0.204 1.204 19 C 0.003 3.997 20 C -0.039 4.039 21 C 0.399 3.601 22 F -0.167 7.167 23 F -0.165 7.165 24 F -0.164 7.164 25 H 0.082 0.918 26 H 0.084 0.916 27 H 0.119 0.881 28 H 0.124 0.876 29 H 0.120 0.880 30 H 0.079 0.921 31 H 0.100 0.900 32 H 0.118 0.882 33 H 0.042 0.958 34 H 0.066 0.934 35 H 0.042 0.958 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.182 2.080 16.170 16.831 hybrid contribution 0.467 -0.387 -0.698 0.925 sum 4.649 1.693 15.472 16.244 Atomic orbital electron populations 1.22005 0.90894 1.03466 1.05186 1.22168 1.00404 1.01537 0.89450 0.86089 1.21726 1.03557 1.00926 0.92070 1.20089 0.79848 0.85493 0.84300 1.90632 1.41262 1.25137 1.86215 1.48063 1.53986 1.24578 1.05836 1.22541 1.00203 0.95976 0.84909 1.21195 0.91415 0.85880 0.98336 1.44014 1.64631 1.21653 1.01077 1.19177 1.04691 1.31466 0.83592 0.91458 1.25087 0.94610 1.01058 0.98644 1.70018 1.05961 1.48747 1.29683 0.86280 0.78565 0.77554 0.84253 1.21305 1.21462 1.20385 1.21358 0.96570 0.93139 0.88652 1.22517 0.95640 0.85378 1.00362 1.20706 0.75319 0.77783 0.86338 1.93174 1.30231 1.96441 1.96818 1.93169 1.88479 1.80778 1.54043 1.93173 1.88426 1.37937 1.96823 0.91793 0.91607 0.88124 0.87616 0.87953 0.92074 0.90018 0.88217 0.95824 0.93404 0.95796 0.91366 0.91334 0.90879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.76 8.69 37.16 0.32 -1.43 16 2 C -0.12 -1.25 2.01 -90.61 -0.18 -1.43 16 3 H 0.12 1.31 7.96 -51.93 -0.41 0.89 16 4 C -0.14 -1.63 3.27 -27.88 -0.09 -1.72 16 5 C 0.52 7.98 7.41 -10.99 -0.08 7.90 16 6 O -0.55 -9.91 13.37 5.56 0.07 -9.83 16 7 N -0.59 -9.97 2.95 -172.24 -0.51 -10.48 16 8 C 0.09 1.66 6.59 -3.59 -0.02 1.64 16 9 C 0.16 3.63 5.51 -3.59 -0.02 3.61 16 10 N -0.59 -13.92 2.96 -171.79 -0.51 -14.43 16 11 C -0.26 -6.75 9.57 -15.06 -0.14 -6.89 16 12 H 0.07 1.70 7.89 -52.49 -0.41 1.29 16 13 C 0.01 0.14 4.91 -17.43 -0.09 0.05 16 14 N -0.90 -25.22 11.20 55.49 0.62 -24.59 16 15 Si 0.90 20.81 29.59 -169.99 -5.03 15.78 16 16 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 18 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 19 C 0.13 2.45 6.70 -3.39 -0.02 2.43 16 20 C 0.09 1.30 6.52 -3.39 -0.02 1.27 16 21 C 0.45 4.78 2.69 37.16 0.10 4.88 16 22 F -0.19 -2.01 16.71 2.25 0.04 -1.97 16 23 F -0.18 -2.01 16.80 2.25 0.04 -1.98 16 24 F -0.18 -2.01 16.37 2.25 0.04 -1.97 16 25 H 0.06 0.67 7.80 -51.93 -0.41 0.27 16 26 H 0.06 0.65 7.80 -51.93 -0.41 0.24 16 27 H 0.10 1.34 5.95 -51.93 -0.31 1.04 16 28 H 0.11 1.12 7.52 -51.93 -0.39 0.73 16 29 H 0.10 1.00 7.43 -51.93 -0.39 0.62 16 30 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.08 1.56 6.99 -51.93 -0.36 1.19 16 32 H 0.10 2.55 6.00 -51.93 -0.31 2.23 16 33 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 35 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.07 1.22 7.93 -51.93 -0.41 0.80 16 37 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.07 0.85 5.91 -51.93 -0.31 0.54 16 LS Contribution 315.21 15.07 4.75 4.75 Total: -1.00 -29.15 315.21 -5.68 -34.83 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: -4.94 Total: -0.42 kcal Atomic # 6 Polarization: 10.56 SS G_CDS: -0.25 Total: 10.31 kcal Atomic # 7 Polarization: -49.11 SS G_CDS: -0.39 Total: -49.50 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.07 Total: -9.83 kcal Atomic # 9 Polarization: -6.03 SS G_CDS: 0.11 Total: -5.92 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.03 Total: 15.78 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.15 -5.68 -34.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599538610.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.182 kcal (2) G-P(sol) polarization free energy of solvation -29.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds