Wall clock time and date at job start Tue Mar 31 2020 07:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47331 * 2 1 4 4 C 1.53004 * 109.47223 * 239.99760 * 2 1 3 5 5 C 1.50696 * 109.46978 * 65.00548 * 4 2 1 6 6 O 1.21282 * 120.00083 * 359.97438 * 5 4 2 7 7 N 1.34777 * 119.99905 * 180.02562 * 5 4 2 8 8 C 1.46967 * 120.59439 * 179.97438 * 7 5 4 9 9 C 1.53374 * 108.63231 * 235.20661 * 8 7 5 10 10 N 1.46972 * 108.63217 * 310.57203 * 9 8 7 11 11 C 1.36935 * 120.59045 * 235.20705 * 10 9 8 12 12 H 1.08002 * 119.99725 * 151.84492 * 11 10 9 13 13 C 1.38804 * 120.00405 * 331.57419 * 11 10 9 14 14 N 1.31622 * 119.99787 * 342.82520 * 13 11 10 15 15 Si 1.86800 * 120.00346 * 162.82771 * 13 11 10 16 16 H 1.48493 * 109.47374 * 89.99790 * 15 13 11 17 17 H 1.48496 * 109.47349 * 210.00137 * 15 13 11 18 18 H 1.48504 * 109.47003 * 329.99893 * 15 13 11 19 19 C 1.46962 * 118.81330 * 55.48066 * 10 9 8 20 20 C 1.46958 * 120.59449 * 359.97334 * 7 5 4 21 21 C 1.53009 * 109.46956 * 119.99984 * 2 1 3 22 22 F 1.39899 * 109.47039 * 179.97438 * 21 2 1 23 23 F 1.39899 * 109.46958 * 300.00058 * 21 2 1 24 24 F 1.39899 * 109.46897 * 59.99728 * 21 2 1 25 25 H 1.09001 * 109.47331 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46987 * 300.00412 * 1 2 3 27 27 H 1.09006 * 109.46890 * 60.00073 * 1 2 3 28 28 H 1.08997 * 109.47072 * 304.99717 * 4 2 1 29 29 H 1.09005 * 109.46717 * 185.00278 * 4 2 1 30 30 H 1.08996 * 109.60899 * 115.45556 * 8 7 5 31 31 H 1.09001 * 109.60456 * 354.94534 * 8 7 5 32 32 H 1.09002 * 109.60640 * 190.83592 * 9 8 7 33 33 H 1.08999 * 109.75615 * 70.39807 * 9 8 7 34 34 H 0.96999 * 119.99847 * 179.97438 * 14 13 11 35 35 H 1.08998 * 109.60973 * 64.26416 * 19 10 9 36 36 H 1.08995 * 109.61395 * 184.77560 * 19 10 9 37 37 H 1.09002 * 109.60988 * 244.54275 * 20 7 5 38 38 H 1.09006 * 109.61277 * 4.88162 * 20 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6415 0.0570 -2.4765 6 8 1.0111 1.0869 -2.3633 7 7 1.9846 -0.3920 -3.7001 8 6 1.6023 0.3563 -4.9059 9 6 0.8278 -0.5819 -5.8398 10 7 1.5916 -1.8283 -5.9922 11 6 1.9402 -2.2844 -7.2354 12 1 2.8284 -2.8860 -7.3604 13 6 1.1490 -1.9784 -8.3341 14 7 -0.0850 -1.5552 -8.1590 15 14 1.8355 -2.1672 -10.0611 16 1 1.5586 -3.5393 -10.5566 17 1 1.1916 -1.1767 -10.9607 18 1 3.3022 -1.9355 -10.0388 19 6 1.9691 -2.5795 -4.7868 20 6 2.7478 -1.6386 -3.8525 21 6 2.0400 -0.7213 1.2493 22 9 3.4390 -0.7218 1.2491 23 9 1.5736 -0.0618 2.3916 24 9 1.5736 -2.0402 1.2493 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.6055 -1.7199 -1.2951 29 1 3.1264 -0.7995 -1.2055 30 1 2.4977 0.7182 -5.4110 31 1 0.9700 1.1995 -4.6278 32 1 0.7033 -0.1079 -6.8135 33 1 -0.1504 -0.8022 -5.4124 34 1 -0.6377 -1.3410 -8.9268 35 1 1.0715 -2.9383 -4.2833 36 1 2.5984 -3.4250 -5.0647 37 1 3.7250 -1.4190 -4.2826 38 1 2.8747 -2.1113 -2.8785 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599538610.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:32:33 Heat of formation + Delta-G solvation = -186.781187 kcal Electronic energy + Delta-G solvation = -24764.677425 eV Core-core repulsion = 20612.994800 eV Total energy + Delta-G solvation = -4151.682625 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -51.09661 -48.58262 -48.54997 -41.20806 -38.61874 -36.07842 -35.63671 -33.07347 -32.14788 -29.54213 -28.21649 -27.24168 -25.41622 -24.43004 -22.84459 -21.78881 -20.18363 -19.55033 -19.29916 -18.84558 -18.28540 -17.35924 -16.96886 -16.66043 -16.52881 -15.78311 -15.49431 -15.46917 -15.29096 -15.03757 -14.99893 -14.90347 -14.72999 -14.68626 -14.54267 -14.05275 -13.98505 -13.38986 -13.25145 -13.13815 -12.66468 -12.48771 -12.35955 -12.34709 -12.25787 -12.20413 -12.00128 -11.83455 -11.65322 -10.76821 -10.59681 -9.80777 -8.65139 -7.88361 -5.36817 1.48054 1.50836 1.58697 1.60047 1.68536 2.07772 2.51597 2.79903 2.99265 3.08229 3.27174 3.55058 3.61101 3.76741 3.85833 4.17579 4.25361 4.31900 4.42870 4.50313 4.52122 4.55454 4.68771 4.77283 4.82968 4.90978 4.92872 5.07458 5.25883 5.27755 5.47624 5.61555 5.68645 6.35894 6.51385 7.10178 7.15782 7.80211 8.32721 9.16738 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.037353 B = 0.003475 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.424223 B = 8056.402381 C = 8319.558497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.113 4.113 3 H 0.122 0.878 4 C -0.136 4.136 5 C 0.514 3.486 6 O -0.579 6.579 7 N -0.602 5.602 8 C 0.103 3.897 9 C 0.169 3.831 10 N -0.610 5.610 11 C -0.264 4.264 12 H 0.075 0.925 13 C -0.049 4.049 14 N -0.936 5.936 15 Si 0.967 3.033 16 H -0.286 1.286 17 H -0.296 1.296 18 H -0.267 1.267 19 C 0.123 3.877 20 C 0.096 3.904 21 C 0.461 3.539 22 F -0.184 7.184 23 F -0.185 7.185 24 F -0.183 7.183 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.122 0.878 29 H 0.129 0.871 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.067 0.933 33 H -0.007 1.007 34 H 0.250 0.750 35 H 0.018 0.982 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.539 0.772 17.823 19.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.132 4.132 3 H 0.140 0.860 4 C -0.176 4.176 5 C 0.304 3.696 6 O -0.460 6.460 7 N -0.333 5.333 8 C -0.021 4.021 9 C 0.042 3.958 10 N -0.333 5.333 11 C -0.394 4.394 12 H 0.093 0.907 13 C -0.245 4.245 14 N -0.582 5.582 15 Si 0.795 3.205 16 H -0.212 1.212 17 H -0.223 1.223 18 H -0.192 1.192 19 C -0.003 4.003 20 C -0.027 4.027 21 C 0.407 3.593 22 F -0.165 7.165 23 F -0.167 7.167 24 F -0.164 7.164 25 H 0.088 0.912 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.140 0.860 29 H 0.147 0.853 30 H 0.083 0.917 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.011 0.989 34 H 0.059 0.941 35 H 0.036 0.964 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 6.134 1.299 17.779 18.852 hybrid contribution -0.157 -0.170 -1.106 1.130 sum 5.977 1.128 16.673 17.748 Atomic orbital electron populations 1.21946 0.91324 1.03629 1.04461 1.22108 1.00033 1.01673 0.89425 0.86002 1.21756 1.05295 1.00737 0.89772 1.20771 0.78725 0.85315 0.84804 1.90632 1.42184 1.26603 1.86618 1.48124 1.54584 1.25120 1.05494 1.22084 0.99600 0.94968 0.85443 1.20885 0.90847 0.86642 0.97380 1.44270 1.64623 1.22398 1.02024 1.19562 1.04541 1.30456 0.84806 0.90720 1.25827 0.94851 1.01677 1.02115 1.70177 1.07272 1.50662 1.30119 0.85285 0.78253 0.76995 0.79937 1.21231 1.22256 1.19216 1.21586 0.96955 0.94161 0.87567 1.22504 0.94644 0.83839 1.01739 1.20511 0.75255 0.77553 0.85960 1.93181 1.30124 1.96425 1.96794 1.93170 1.88527 1.80849 1.54140 1.93177 1.88450 1.37998 1.96809 0.91200 0.90575 0.90590 0.86037 0.85301 0.91719 0.90437 0.91448 0.98899 0.94089 0.96438 0.90240 0.90524 0.86331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.21 8.69 71.98 0.63 -2.58 16 2 C -0.11 -2.13 2.01 -10.79 -0.02 -2.15 16 3 H 0.12 2.34 7.96 -2.39 -0.02 2.32 16 4 C -0.14 -2.62 3.27 29.85 0.10 -2.52 16 5 C 0.51 14.86 7.41 87.66 0.65 15.51 16 6 O -0.58 -20.26 13.37 -3.04 -0.04 -20.30 16 7 N -0.60 -19.12 2.95 -817.23 -2.41 -21.53 16 8 C 0.10 3.95 6.59 86.42 0.57 4.52 16 9 C 0.17 8.00 5.51 86.41 0.48 8.48 16 10 N -0.61 -28.74 2.96 -697.42 -2.06 -30.80 16 11 C -0.26 -13.67 9.57 84.03 0.80 -12.86 16 12 H 0.08 3.69 7.89 -2.91 -0.02 3.66 16 13 C -0.05 -2.65 4.91 84.86 0.42 -2.23 16 14 N -0.94 -54.20 11.20 21.65 0.24 -53.96 16 15 Si 0.97 43.21 29.59 68.60 2.03 45.24 16 16 H -0.29 -12.61 7.11 99.48 0.71 -11.91 16 17 H -0.30 -13.45 7.11 99.48 0.71 -12.75 16 18 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 19 C 0.12 4.44 6.70 86.55 0.58 5.02 16 20 C 0.10 2.60 6.52 86.55 0.56 3.16 16 21 C 0.46 8.35 2.69 71.99 0.19 8.54 16 22 F -0.18 -3.35 16.71 44.97 0.75 -2.60 16 23 F -0.19 -3.61 16.80 44.97 0.76 -2.86 16 24 F -0.18 -3.45 16.37 44.97 0.74 -2.71 16 25 H 0.07 1.33 7.80 -2.39 -0.02 1.31 16 26 H 0.08 1.37 7.80 -2.39 -0.02 1.35 16 27 H 0.08 1.98 5.95 -2.38 -0.01 1.97 16 28 H 0.12 2.04 7.52 -2.39 -0.02 2.02 16 29 H 0.13 1.88 7.43 -2.38 -0.02 1.86 16 30 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 31 H 0.08 3.00 6.99 -2.39 -0.02 2.99 16 32 H 0.07 3.61 6.00 -2.39 -0.01 3.60 16 33 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 34 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 35 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.08 2.65 7.93 -2.39 -0.02 2.63 16 37 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.12 2.15 5.91 -2.38 -0.01 2.13 16 Total: -1.00 -64.13 315.21 6.04 -58.09 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: 1.08 Total: 8.53 kcal Atomic # 6 Polarization: 17.93 SS G_CDS: 4.96 Total: 22.89 kcal Atomic # 7 Polarization: -102.06 SS G_CDS: -4.23 Total: -106.29 kcal Atomic # 8 Polarization: -20.26 SS G_CDS: -0.04 Total: -20.30 kcal Atomic # 9 Polarization: -10.41 SS G_CDS: 2.24 Total: -8.16 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -64.13 6.04 -58.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599538610.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.688 kcal (2) G-P(sol) polarization free energy of solvation -64.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds