Wall clock time and date at job start Tue Mar 31 2020 07:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46496 * 109.47433 * 2 1 4 4 C 1.46492 * 120.00314 * 89.99666 * 3 2 1 5 5 C 1.50700 * 109.47154 * 90.00282 * 4 3 2 6 6 H 1.08003 * 119.99772 * 359.97438 * 5 4 3 7 7 C 1.37881 * 120.00283 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99613 * 359.97438 * 7 5 4 9 9 Si 1.86791 * 120.00243 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47067 * 89.99564 * 9 7 5 11 11 H 1.48498 * 109.47489 * 209.99800 * 9 7 5 12 12 H 1.48504 * 109.47388 * 329.99832 * 9 7 5 13 13 C 1.34781 * 119.99563 * 269.99669 * 3 2 1 14 14 O 1.21590 * 119.99936 * 179.97438 * 13 3 2 15 15 N 1.34773 * 120.00378 * 0.02562 * 13 3 2 16 16 C 1.46497 * 120.00511 * 174.37830 * 15 13 3 17 17 C 1.53007 * 112.84536 * 293.95803 * 16 15 13 18 18 F 1.39906 * 109.47086 * 65.14795 * 17 16 15 19 19 F 1.39900 * 109.47125 * 185.14477 * 17 16 15 20 20 F 1.39898 * 109.47237 * 305.14735 * 17 16 15 21 21 C 1.53776 * 113.61953 * 162.76495 * 16 15 13 22 22 C 1.54047 * 86.98526 * 270.83666 * 21 16 15 23 23 C 1.53777 * 113.61747 * 65.15089 * 16 15 13 24 24 H 1.09004 * 109.47288 * 300.00603 * 1 2 3 25 25 H 1.09010 * 109.46828 * 60.00271 * 1 2 3 26 26 H 1.08997 * 109.47706 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46796 * 239.99531 * 2 1 3 28 28 H 1.08999 * 109.46542 * 120.00141 * 2 1 3 29 29 H 1.09002 * 109.47373 * 210.00203 * 4 3 2 30 30 H 1.09000 * 109.47505 * 329.99866 * 4 3 2 31 31 H 0.96999 * 120.00113 * 179.97438 * 8 7 5 32 32 H 0.97002 * 119.99847 * 354.37622 * 15 13 3 33 33 H 1.09003 * 113.61470 * 25.42798 * 21 16 15 34 34 H 1.08994 * 113.61780 * 156.33435 * 21 16 15 35 35 H 1.08999 * 113.62648 * 220.02420 * 22 21 16 36 36 H 1.09003 * 113.69539 * 89.12005 * 22 21 16 37 37 H 1.09000 * 113.62024 * 203.67272 * 23 16 15 38 38 H 1.09004 * 113.61420 * 334.57213 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2625 2.0718 1.2686 5 6 3.6858 1.8350 1.7037 6 1 4.3426 1.2301 1.0961 7 6 4.1492 2.3897 2.8779 8 7 3.3491 3.1258 3.6180 9 14 5.9131 2.0956 3.4175 10 1 6.7852 3.1608 2.8607 11 1 5.9877 2.1195 4.9004 12 1 6.3689 0.7725 2.9203 13 6 2.2431 2.0164 -1.1673 14 8 2.6480 3.1629 -1.1674 15 7 2.0180 1.3812 -2.3344 16 6 2.1433 2.1082 -3.6001 17 6 1.0875 3.2035 -3.7631 18 9 1.2878 4.1922 -2.7937 19 9 1.1970 3.7708 -5.0373 20 9 -0.1875 2.6492 -3.6074 21 6 2.2735 1.1907 -4.8273 22 6 3.7955 1.2291 -4.5931 23 6 3.5751 2.5833 -3.8985 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8932 -0.5139 0.8900 29 1 2.0956 3.1410 1.1383 30 1 1.5817 1.6878 2.0283 31 1 3.6749 3.5157 4.4442 32 1 1.7730 0.4426 -2.3364 33 1 1.8330 0.2040 -4.6835 34 1 1.9632 1.6620 -5.7598 35 1 4.3773 1.2995 -5.5122 36 1 4.1555 0.4483 -3.9231 37 1 3.6200 3.4348 -4.5775 38 1 4.1847 2.7204 -3.0054 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602991629.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:43:58 Heat of formation + Delta-G solvation = -153.068452 kcal Electronic energy + Delta-G solvation = -25794.728610 eV Core-core repulsion = 21644.507879 eV Total energy + Delta-G solvation = -4150.220731 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.80129 -47.41495 -47.11191 -40.25844 -38.23826 -35.22174 -33.23577 -32.32316 -30.09908 -28.06212 -26.70155 -26.01522 -23.43447 -23.03484 -22.49534 -19.93920 -19.33347 -18.17417 -18.02023 -17.70680 -17.34260 -16.36291 -15.78006 -15.14546 -14.71866 -14.38895 -14.23918 -14.12991 -13.94109 -13.76007 -13.56995 -13.38784 -13.31741 -13.12258 -12.87101 -12.63081 -12.49266 -12.10594 -12.01475 -11.72804 -11.19540 -11.09333 -10.96474 -10.90904 -10.75108 -10.65066 -10.51481 -10.10433 -9.63334 -9.21206 -8.89962 -8.40701 -7.62493 -6.01490 -4.05979 2.80690 3.06743 3.32261 3.38421 3.40331 3.74810 3.82421 4.08898 4.20181 4.32897 4.49507 4.55683 4.71059 4.89055 4.99585 5.28504 5.32549 5.39027 5.47421 5.60594 5.66694 5.69656 5.78236 5.97633 6.04852 6.15361 6.21679 6.48611 6.65924 6.77994 7.38043 7.56465 7.68971 7.97074 8.26724 8.64618 8.95006 9.31181 9.59492 11.06403 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.019596 B = 0.005209 C = 0.004950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.517198 B = 5374.328066 C = 5655.699209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.110 3.890 3 N -0.608 5.608 4 C 0.262 3.738 5 C -0.525 4.525 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.275 1.275 13 C 0.697 3.303 14 O -0.561 6.561 15 N -0.730 5.730 16 C 0.128 3.872 17 C 0.444 3.556 18 F -0.155 7.155 19 F -0.187 7.187 20 F -0.188 7.188 21 C -0.130 4.130 22 C -0.131 4.131 23 C -0.131 4.131 24 H 0.062 0.938 25 H 0.051 0.949 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.085 0.915 29 H 0.044 0.956 30 H 0.033 0.967 31 H 0.263 0.737 32 H 0.400 0.600 33 H 0.085 0.915 34 H 0.105 0.895 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.410 -7.370 -16.871 18.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.015 4.015 3 N -0.343 5.343 4 C 0.143 3.857 5 C -0.564 4.564 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.200 1.200 13 C 0.398 3.602 14 O -0.436 6.436 15 N -0.390 5.390 16 C 0.036 3.964 17 C 0.388 3.612 18 F -0.136 7.136 19 F -0.169 7.169 20 F -0.170 7.170 21 C -0.168 4.168 22 C -0.168 4.168 23 C -0.170 4.170 24 H 0.081 0.919 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.103 0.897 29 H 0.062 0.938 30 H 0.050 0.950 31 H 0.072 0.928 32 H 0.237 0.763 33 H 0.103 0.897 34 H 0.124 0.876 35 H 0.097 0.903 36 H 0.106 0.894 37 H 0.114 0.886 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -4.153 -6.374 -16.594 18.255 hybrid contribution 0.491 -0.400 0.452 0.778 sum -3.662 -6.774 -16.143 17.885 Atomic orbital electron populations 1.22247 0.96768 1.01328 1.02607 1.21325 0.93527 0.84468 1.02153 1.47566 1.67322 1.13254 1.06176 1.19197 0.96062 0.93521 0.76965 1.21455 0.97020 1.31765 1.06132 0.92551 1.24926 0.97745 0.95004 0.96431 1.69933 1.35581 1.33507 1.14366 0.86515 0.84904 0.78534 0.77520 1.20601 1.21200 1.20029 1.15959 0.79262 0.84941 0.80027 1.90960 1.50813 1.16311 1.85519 1.44902 1.77738 1.13600 1.02809 1.22093 0.94467 0.92438 0.87448 1.21025 0.82137 0.84327 0.73744 1.93346 1.94612 1.63439 1.62234 1.93114 1.96063 1.86533 1.41205 1.93139 1.43065 1.85418 1.95357 1.23322 0.98265 0.99554 0.95669 1.22824 0.94858 0.97983 1.01166 1.23265 0.93351 0.97886 1.02466 0.91885 0.93009 0.92231 0.92642 0.89706 0.93755 0.94950 0.92752 0.76271 0.89685 0.87647 0.90287 0.89375 0.88647 0.88294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.32 10.24 37.16 0.38 -1.94 16 2 C 0.11 1.72 5.94 -4.04 -0.02 1.70 16 3 N -0.61 -12.77 2.46 -180.81 -0.44 -13.21 16 4 C 0.26 6.84 5.16 -5.20 -0.03 6.82 16 5 C -0.52 -14.80 9.39 -34.44 -0.32 -15.12 16 6 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.69 13.29 55.43 0.74 -25.95 16 9 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 C 0.70 14.49 7.72 -86.92 -0.67 13.82 16 14 O -0.56 -14.04 12.37 5.29 0.07 -13.97 16 15 N -0.73 -11.19 4.95 -51.66 -0.26 -11.44 16 16 C 0.13 1.76 0.68 -131.01 -0.09 1.67 16 17 C 0.44 6.98 2.68 37.16 0.10 7.08 16 18 F -0.16 -3.09 14.49 2.25 0.03 -3.06 16 19 F -0.19 -2.60 15.71 2.25 0.04 -2.56 16 20 F -0.19 -2.94 17.24 2.25 0.04 -2.90 16 21 C -0.13 -1.21 7.28 -25.78 -0.19 -1.40 16 22 C -0.13 -1.26 8.00 -25.78 -0.21 -1.47 16 23 C -0.13 -1.75 6.81 -25.92 -0.18 -1.93 16 24 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.05 0.71 8.14 -51.92 -0.42 0.28 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.70 6.29 -51.93 -0.33 0.37 16 28 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 29 H 0.04 1.32 7.42 -51.93 -0.39 0.94 16 30 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 31 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 32 H 0.40 4.94 6.36 -40.82 -0.26 4.68 16 33 H 0.08 0.64 8.09 -51.93 -0.42 0.22 16 34 H 0.11 0.86 7.32 -51.93 -0.38 0.48 16 35 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.10 1.16 7.67 -51.93 -0.40 0.77 16 38 H 0.10 1.66 7.17 -51.93 -0.37 1.28 16 LS Contribution 324.01 15.07 4.88 4.88 Total: -1.00 -33.19 324.01 -6.29 -39.48 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -5.04 Total: 1.02 kcal Atomic # 6 Polarization: 12.19 SS G_CDS: -1.32 Total: 10.87 kcal Atomic # 7 Polarization: -50.65 SS G_CDS: 0.04 Total: -50.61 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: 0.07 Total: -13.97 kcal Atomic # 9 Polarization: -8.63 SS G_CDS: 0.11 Total: -8.52 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.19 -6.29 -39.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602991629.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.589 kcal (2) G-P(sol) polarization free energy of solvation -33.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds