Wall clock time and date at job start Tue Mar 31 2020 07:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46496 * 109.47433 * 2 1 4 4 C 1.46492 * 120.00314 * 89.99666 * 3 2 1 5 5 C 1.50700 * 109.47154 * 90.00282 * 4 3 2 6 6 H 1.08003 * 119.99772 * 359.97438 * 5 4 3 7 7 C 1.37881 * 120.00283 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99613 * 359.97438 * 7 5 4 9 9 Si 1.86791 * 120.00243 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47067 * 89.99564 * 9 7 5 11 11 H 1.48498 * 109.47489 * 209.99800 * 9 7 5 12 12 H 1.48504 * 109.47388 * 329.99832 * 9 7 5 13 13 C 1.34781 * 119.99563 * 269.99669 * 3 2 1 14 14 O 1.21590 * 119.99936 * 179.97438 * 13 3 2 15 15 N 1.34773 * 120.00378 * 0.02562 * 13 3 2 16 16 C 1.46497 * 120.00511 * 174.37830 * 15 13 3 17 17 C 1.53007 * 112.84536 * 293.95803 * 16 15 13 18 18 F 1.39906 * 109.47086 * 65.14795 * 17 16 15 19 19 F 1.39900 * 109.47125 * 185.14477 * 17 16 15 20 20 F 1.39898 * 109.47237 * 305.14735 * 17 16 15 21 21 C 1.53776 * 113.61953 * 162.76495 * 16 15 13 22 22 C 1.54047 * 86.98526 * 270.83666 * 21 16 15 23 23 C 1.53777 * 113.61747 * 65.15089 * 16 15 13 24 24 H 1.09004 * 109.47288 * 300.00603 * 1 2 3 25 25 H 1.09010 * 109.46828 * 60.00271 * 1 2 3 26 26 H 1.08997 * 109.47706 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46796 * 239.99531 * 2 1 3 28 28 H 1.08999 * 109.46542 * 120.00141 * 2 1 3 29 29 H 1.09002 * 109.47373 * 210.00203 * 4 3 2 30 30 H 1.09000 * 109.47505 * 329.99866 * 4 3 2 31 31 H 0.96999 * 120.00113 * 179.97438 * 8 7 5 32 32 H 0.97002 * 119.99847 * 354.37622 * 15 13 3 33 33 H 1.09003 * 113.61470 * 25.42798 * 21 16 15 34 34 H 1.08994 * 113.61780 * 156.33435 * 21 16 15 35 35 H 1.08999 * 113.62648 * 220.02420 * 22 21 16 36 36 H 1.09003 * 113.69539 * 89.12005 * 22 21 16 37 37 H 1.09000 * 113.62024 * 203.67272 * 23 16 15 38 38 H 1.09004 * 113.61420 * 334.57213 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2625 2.0718 1.2686 5 6 3.6858 1.8350 1.7037 6 1 4.3426 1.2301 1.0961 7 6 4.1492 2.3897 2.8779 8 7 3.3491 3.1258 3.6180 9 14 5.9131 2.0956 3.4175 10 1 6.7852 3.1608 2.8607 11 1 5.9877 2.1195 4.9004 12 1 6.3689 0.7725 2.9203 13 6 2.2431 2.0164 -1.1673 14 8 2.6480 3.1629 -1.1674 15 7 2.0180 1.3812 -2.3344 16 6 2.1433 2.1082 -3.6001 17 6 1.0875 3.2035 -3.7631 18 9 1.2878 4.1922 -2.7937 19 9 1.1970 3.7708 -5.0373 20 9 -0.1875 2.6492 -3.6074 21 6 2.2735 1.1907 -4.8273 22 6 3.7955 1.2291 -4.5931 23 6 3.5751 2.5833 -3.8985 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8932 -0.5139 0.8900 29 1 2.0956 3.1410 1.1383 30 1 1.5817 1.6878 2.0283 31 1 3.6749 3.5157 4.4442 32 1 1.7730 0.4426 -2.3364 33 1 1.8330 0.2040 -4.6835 34 1 1.9632 1.6620 -5.7598 35 1 4.3773 1.2995 -5.5122 36 1 4.1555 0.4483 -3.9231 37 1 3.6200 3.4348 -4.5775 38 1 4.1847 2.7204 -3.0054 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602991629.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:43:58 Heat of formation + Delta-G solvation = -174.836299 kcal Electronic energy + Delta-G solvation = -25795.672535 eV Core-core repulsion = 21644.507879 eV Total energy + Delta-G solvation = -4151.164656 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -51.05562 -48.61558 -48.48284 -41.59013 -39.53238 -36.87530 -35.09375 -33.95023 -31.60701 -29.44333 -28.44223 -26.91733 -25.17279 -24.42172 -23.77759 -21.23310 -20.64998 -19.39528 -19.30321 -18.95334 -18.89914 -18.46517 -17.15390 -16.55522 -16.22463 -16.02696 -15.48466 -15.35900 -15.32849 -15.01736 -14.98583 -14.71681 -14.68689 -14.56245 -14.29690 -14.05395 -13.65135 -13.40268 -13.28674 -13.16085 -13.06774 -12.67392 -12.52280 -12.18944 -12.03613 -11.98488 -11.82876 -11.68839 -11.61561 -10.90027 -10.62935 -10.28776 -9.36912 -8.19514 -6.34285 1.37081 1.40431 1.48957 1.53291 1.76139 2.25907 2.40806 2.78648 2.86011 2.95092 3.09883 3.15171 3.53944 3.66773 3.76709 4.05593 4.18453 4.38388 4.52589 4.61608 4.70105 4.84071 4.89472 4.96727 4.98969 5.02634 5.06959 5.14495 5.24076 5.36308 5.48995 5.60003 5.80859 6.07455 6.10170 6.75204 7.12589 7.32870 7.72560 8.87232 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.019596 B = 0.005209 C = 0.004950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.517198 B = 5374.328066 C = 5655.699209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.103 3.897 3 N -0.617 5.617 4 C 0.281 3.719 5 C -0.538 4.538 6 H 0.054 0.946 7 C 0.006 3.994 8 N -0.930 5.930 9 Si 0.968 3.032 10 H -0.282 1.282 11 H -0.276 1.276 12 H -0.260 1.260 13 C 0.693 3.307 14 O -0.612 6.612 15 N -0.709 5.709 16 C 0.111 3.889 17 C 0.437 3.563 18 F -0.188 7.188 19 F -0.176 7.176 20 F -0.188 7.188 21 C -0.107 4.107 22 C -0.115 4.115 23 C -0.143 4.143 24 H 0.037 0.963 25 H 0.051 0.949 26 H 0.099 0.901 27 H 0.095 0.905 28 H 0.078 0.922 29 H -0.006 1.006 30 H 0.023 0.977 31 H 0.266 0.734 32 H 0.417 0.583 33 H 0.114 0.886 34 H 0.124 0.876 35 H 0.106 0.894 36 H 0.088 0.912 37 H 0.102 0.898 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.881 -10.185 -18.982 21.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.020 4.020 3 N -0.351 5.351 4 C 0.159 3.841 5 C -0.576 4.576 6 H 0.073 0.927 7 C -0.193 4.193 8 N -0.570 5.570 9 Si 0.792 3.208 10 H -0.209 1.209 11 H -0.201 1.201 12 H -0.184 1.184 13 C 0.394 3.606 14 O -0.490 6.490 15 N -0.369 5.369 16 C 0.019 3.981 17 C 0.381 3.619 18 F -0.169 7.169 19 F -0.157 7.157 20 F -0.170 7.170 21 C -0.145 4.145 22 C -0.152 4.152 23 C -0.181 4.181 24 H 0.056 0.944 25 H 0.070 0.930 26 H 0.117 0.883 27 H 0.113 0.887 28 H 0.096 0.904 29 H 0.012 0.988 30 H 0.041 0.959 31 H 0.075 0.925 32 H 0.258 0.742 33 H 0.132 0.868 34 H 0.142 0.858 35 H 0.125 0.875 36 H 0.107 0.893 37 H 0.120 0.880 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.655 -9.264 -18.756 21.236 hybrid contribution 0.262 0.528 1.060 1.213 sum -3.393 -8.736 -17.695 20.024 Atomic orbital electron populations 1.22166 0.94947 1.03481 1.01381 1.21662 0.94979 0.81533 1.03780 1.47441 1.67761 1.15189 1.04758 1.18578 0.95218 0.91132 0.79167 1.21722 0.97849 1.31755 1.06316 0.92732 1.25861 1.02325 0.94569 0.96501 1.70062 1.37744 1.34375 1.14848 0.85418 0.79099 0.78820 0.77464 1.20863 1.20094 1.18405 1.16153 0.78828 0.84450 0.81173 1.90926 1.52880 1.18758 1.86471 1.44555 1.76403 1.14170 1.01782 1.22604 0.93868 0.93287 0.88304 1.21429 0.82721 0.84282 0.73489 1.93285 1.94841 1.65000 1.63813 1.93128 1.96031 1.86474 1.40084 1.93132 1.43220 1.85238 1.95381 1.23398 0.97740 0.99809 0.93527 1.22797 0.95737 0.94953 1.01702 1.23339 0.92552 1.00790 1.01441 0.94361 0.92995 0.88270 0.88666 0.90387 0.98823 0.95942 0.92503 0.74202 0.86759 0.85779 0.87532 0.89316 0.87965 0.92557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.10 10.24 71.98 0.74 -3.36 16 2 C 0.10 3.08 5.94 86.38 0.51 3.60 16 3 N -0.62 -26.45 2.46 -844.22 -2.07 -28.52 16 4 C 0.28 15.44 5.16 85.63 0.44 15.88 16 5 C -0.54 -31.18 9.39 25.60 0.24 -30.94 16 6 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 7 C 0.01 0.35 5.46 84.66 0.46 0.82 16 8 N -0.93 -57.18 13.29 21.45 0.28 -56.90 16 9 Si 0.97 45.28 29.54 68.60 2.03 47.30 16 10 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 11 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 12 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 13 C 0.69 29.44 7.72 179.05 1.38 30.82 16 14 O -0.61 -32.32 12.37 -4.00 -0.05 -32.36 16 15 N -0.71 -20.80 4.95 -435.61 -2.16 -22.96 16 16 C 0.11 2.88 0.68 4.13 0.00 2.88 16 17 C 0.44 13.49 2.68 71.98 0.19 13.69 16 18 F -0.19 -7.83 14.49 44.97 0.65 -7.17 16 19 F -0.18 -4.63 15.71 44.97 0.71 -3.92 16 20 F -0.19 -5.66 17.24 44.97 0.78 -4.89 16 21 C -0.11 -1.53 7.28 31.21 0.23 -1.31 16 22 C -0.11 -1.81 8.00 31.21 0.25 -1.56 16 23 C -0.14 -3.71 6.81 31.12 0.21 -3.49 16 24 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 26 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.10 2.07 6.29 -2.39 -0.02 2.06 16 28 H 0.08 2.46 8.07 -2.39 -0.02 2.44 16 29 H -0.01 -0.41 7.42 -2.39 -0.02 -0.43 16 30 H 0.02 1.26 8.07 -2.39 -0.02 1.24 16 31 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 32 H 0.42 9.01 6.36 -92.71 -0.59 8.42 16 33 H 0.11 1.05 8.09 -2.39 -0.02 1.03 16 34 H 0.12 1.41 7.32 -2.39 -0.02 1.39 16 35 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.10 2.44 7.67 -2.39 -0.02 2.42 16 38 H 0.06 1.96 7.17 -2.39 -0.02 1.94 16 Total: -1.00 -77.78 324.01 5.32 -72.45 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: 0.50 Total: 9.95 kcal Atomic # 6 Polarization: 22.36 SS G_CDS: 4.66 Total: 27.02 kcal Atomic # 7 Polarization: -104.42 SS G_CDS: -3.94 Total: -108.37 kcal Atomic # 8 Polarization: -32.32 SS G_CDS: -0.05 Total: -32.36 kcal Atomic # 9 Polarization: -18.12 SS G_CDS: 2.13 Total: -15.98 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.30 kcal Total: -77.78 5.32 -72.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602991629.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.382 kcal (2) G-P(sol) polarization free energy of solvation -77.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds