Wall clock time and date at job start Tue Mar 31 2020 07:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.08996 * 109.47656 * 2 1 4 4 C 1.50702 * 109.47081 * 239.99597 * 2 1 3 5 5 O 1.21284 * 120.00318 * 239.99889 * 4 2 1 6 6 N 1.34784 * 119.99839 * 60.00647 * 4 2 1 7 7 C 1.46492 * 119.99943 * 179.97438 * 6 4 2 8 8 C 1.53045 * 109.46131 * 204.99621 * 7 6 4 9 9 C 1.53190 * 109.31412 * 178.61543 * 8 7 6 10 10 N 1.46924 * 108.89302 * 54.56599 * 9 8 7 11 11 C 1.36939 * 120.63060 * 126.46770 * 10 9 8 12 12 H 1.07997 * 119.99691 * 332.72781 * 11 10 9 13 13 C 1.38808 * 119.99990 * 152.73100 * 11 10 9 14 14 N 1.31611 * 120.00187 * 159.40601 * 13 11 10 15 15 Si 1.86807 * 120.00080 * 339.40635 * 13 11 10 16 16 H 1.48502 * 109.46912 * 92.90377 * 15 13 11 17 17 H 1.48493 * 109.47014 * 212.90653 * 15 13 11 18 18 H 1.48501 * 109.46860 * 332.90463 * 15 13 11 19 19 C 1.46967 * 118.71435 * 306.63798 * 10 9 8 20 20 C 1.53043 * 109.46146 * 84.93030 * 7 6 4 21 21 C 1.52998 * 109.47177 * 120.00308 * 2 1 3 22 22 F 1.39898 * 109.47436 * 180.02562 * 21 2 1 23 23 F 1.39907 * 109.46913 * 299.99429 * 21 2 1 24 24 F 1.39899 * 109.47530 * 59.99543 * 21 2 1 25 25 H 1.09004 * 109.46973 * 300.00269 * 1 2 3 26 26 H 1.09000 * 109.47193 * 59.99656 * 1 2 3 27 27 H 1.08996 * 109.47656 * 179.97438 * 1 2 3 28 28 H 0.97000 * 119.99746 * 359.97438 * 6 4 2 29 29 H 1.09003 * 109.45426 * 324.96491 * 7 6 4 30 30 H 1.08999 * 109.49467 * 58.66061 * 8 7 6 31 31 H 1.09000 * 109.49261 * 298.57044 * 8 7 6 32 32 H 1.09004 * 109.58495 * 174.42385 * 9 8 7 33 33 H 1.08999 * 109.58469 * 294.70784 * 9 8 7 34 34 H 0.97006 * 120.00623 * 179.97438 * 14 13 11 35 35 H 1.08999 * 109.46555 * 293.57797 * 19 10 9 36 36 H 1.08995 * 109.70994 * 173.28941 * 19 10 9 37 37 H 1.08998 * 109.49429 * 301.33701 * 20 7 6 38 38 H 1.08993 * 109.49639 * 61.39921 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7105 -1.2304 5 8 2.7295 -1.6966 -1.1192 6 7 1.7067 -0.2500 -2.4546 7 6 2.1954 -0.9403 -3.6507 8 6 2.2467 0.0434 -4.8220 9 6 2.7907 -0.6731 -6.0619 10 7 1.9775 -1.8703 -6.3148 11 6 1.4069 -2.0798 -7.5419 12 1 1.1610 -1.2391 -8.1736 13 6 1.1445 -3.3726 -7.9737 14 7 0.2589 -3.5819 -8.9245 15 14 2.0484 -4.8156 -7.2052 16 1 1.2460 -5.3600 -6.0805 17 1 2.2505 -5.8739 -8.2271 18 1 3.3673 -4.3597 -6.6973 19 6 1.7852 -2.8365 -5.2242 20 6 1.2524 -2.0958 -3.9937 21 6 2.0399 -0.7213 1.2492 22 9 3.4389 -0.7208 1.2495 23 9 1.5736 -0.0617 2.3915 24 9 1.5735 -2.0403 1.2493 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.1488 0.5385 -2.5436 29 1 3.1950 -1.3315 -3.4611 30 1 2.9002 0.8779 -4.5679 31 1 1.2433 0.4161 -5.0281 32 1 2.7367 -0.0062 -6.9224 33 1 3.8268 -0.9647 -5.8902 34 1 0.0758 -4.4853 -9.2266 35 1 2.7386 -3.3068 -4.9832 36 1 1.0688 -3.5988 -5.5305 37 1 1.1982 -2.7838 -3.1500 38 1 0.2583 -1.7029 -4.2071 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610292551.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:38:04 Heat of formation + Delta-G solvation = -197.057721 kcal Electronic energy + Delta-G solvation = -24831.746114 eV Core-core repulsion = 20679.617865 eV Total energy + Delta-G solvation = -4152.128249 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -51.12195 -48.62001 -48.58387 -41.24172 -39.25918 -36.16547 -35.21519 -33.93990 -31.97773 -31.63992 -27.41927 -27.03053 -24.82636 -24.41599 -23.29939 -21.52575 -21.16985 -19.76323 -19.48792 -18.97292 -18.54687 -17.70449 -17.45564 -16.62900 -16.34832 -15.95716 -15.59042 -15.42571 -15.35643 -15.12528 -15.00361 -14.77754 -14.73873 -14.70285 -14.56934 -14.20056 -14.12515 -13.79052 -13.47715 -13.42181 -12.98987 -12.71197 -12.56920 -12.41552 -12.22567 -12.05022 -11.78135 -11.50711 -11.46845 -11.04355 -10.74851 -10.12724 -8.97425 -8.18246 -5.49124 1.27703 1.38617 1.40312 1.46799 1.52072 2.00194 2.39334 2.65966 3.00567 3.03756 3.09234 3.33588 3.63434 3.80151 3.82935 3.93121 4.01042 4.22220 4.30946 4.45550 4.63783 4.67015 4.68050 4.69737 4.84483 4.94582 5.00862 5.09050 5.12585 5.16336 5.39270 5.45705 5.86402 6.12464 6.40924 6.90048 7.09814 7.60871 8.02040 9.01421 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.029852 B = 0.003811 C = 0.003670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.745989 B = 7345.547691 C = 7626.747483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.149 4.149 3 H 0.180 0.820 4 C 0.515 3.485 5 O -0.570 6.570 6 N -0.697 5.697 7 C 0.159 3.841 8 C -0.124 4.124 9 C 0.142 3.858 10 N -0.619 5.619 11 C -0.244 4.244 12 H 0.063 0.937 13 C -0.029 4.029 14 N -0.954 5.954 15 Si 0.935 3.065 16 H -0.282 1.282 17 H -0.310 1.310 18 H -0.266 1.266 19 C 0.124 3.876 20 C -0.130 4.130 21 C 0.464 3.536 22 F -0.189 7.189 23 F -0.175 7.175 24 F -0.189 7.189 25 H 0.102 0.898 26 H 0.109 0.891 27 H 0.059 0.941 28 H 0.420 0.580 29 H 0.069 0.931 30 H 0.100 0.900 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.031 0.969 34 H 0.261 0.739 35 H 0.023 0.977 36 H 0.049 0.951 37 H 0.056 0.944 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.905 13.580 21.447 25.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.171 4.171 3 H 0.197 0.803 4 C 0.301 3.699 5 O -0.449 6.449 6 N -0.348 5.348 7 C 0.054 3.946 8 C -0.163 4.163 9 C 0.017 3.983 10 N -0.344 5.344 11 C -0.374 4.374 12 H 0.081 0.919 13 C -0.224 4.224 14 N -0.600 5.600 15 Si 0.765 3.235 16 H -0.209 1.209 17 H -0.238 1.238 18 H -0.191 1.191 19 C -0.001 4.001 20 C -0.170 4.170 21 C 0.410 3.590 22 F -0.170 7.170 23 F -0.156 7.156 24 F -0.170 7.170 25 H 0.120 0.880 26 H 0.128 0.872 27 H 0.078 0.922 28 H 0.259 0.741 29 H 0.087 0.913 30 H 0.118 0.882 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.049 0.951 34 H 0.070 0.930 35 H 0.041 0.959 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.358 12.785 21.442 25.001 hybrid contribution 0.200 -1.223 0.014 1.239 sum 1.558 11.562 21.456 24.423 Atomic orbital electron populations 1.21947 0.87262 1.04494 1.07034 1.22709 1.02706 1.03811 0.87914 0.80324 1.20348 0.79900 0.84223 0.85437 1.90822 1.39314 1.27656 1.87084 1.45806 1.53019 1.32025 1.03991 1.20738 0.97061 0.92594 0.84158 1.22154 1.03316 0.97598 0.93258 1.21115 0.92795 0.87561 0.96866 1.44539 1.58277 1.23733 1.07822 1.18925 1.32057 0.92323 0.94063 0.91922 1.25783 0.99289 0.99691 0.97624 1.69933 1.34462 1.21552 1.34056 0.86097 0.80617 0.80246 0.76528 1.20876 1.23847 1.19084 1.21272 0.97610 0.92661 0.88595 1.22219 1.00018 0.98050 0.96754 1.20227 0.75354 0.77592 0.85854 1.93189 1.30637 1.96384 1.96798 1.93192 1.88370 1.80483 1.53595 1.93181 1.88370 1.38703 1.96795 0.87970 0.87200 0.92231 0.74132 0.91325 0.88171 0.90510 0.91187 0.95064 0.92978 0.95927 0.93292 0.92555 0.91167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 8.84 71.98 0.64 -0.72 16 2 C -0.15 -2.04 2.71 -11.54 -0.03 -2.07 16 3 H 0.18 0.99 8.14 -2.39 -0.02 0.97 16 4 C 0.52 11.46 6.89 87.66 0.60 12.06 16 5 O -0.57 -18.84 14.50 -3.04 -0.04 -18.89 16 6 N -0.70 -13.14 4.97 -442.39 -2.20 -15.34 16 7 C 0.16 4.31 2.42 45.02 0.11 4.42 16 8 C -0.12 -3.07 5.55 30.67 0.17 -2.90 16 9 C 0.14 4.91 6.51 86.36 0.56 5.47 16 10 N -0.62 -28.02 2.78 -699.01 -1.94 -29.96 16 11 C -0.24 -13.44 10.04 84.03 0.84 -12.59 16 12 H 0.06 3.69 8.05 -2.91 -0.02 3.66 16 13 C -0.03 -1.67 5.23 84.86 0.44 -1.23 16 14 N -0.95 -59.41 13.97 21.65 0.30 -59.11 16 15 Si 0.94 47.44 24.35 68.60 1.67 49.11 16 16 H -0.28 -13.81 6.62 99.48 0.66 -13.15 16 17 H -0.31 -15.91 7.11 99.48 0.71 -15.21 16 18 H -0.27 -13.14 6.63 99.48 0.66 -12.48 16 19 C 0.12 5.35 4.20 86.35 0.36 5.71 16 20 C -0.13 -4.40 5.65 30.67 0.17 -4.23 16 21 C 0.46 9.41 2.42 71.98 0.17 9.58 16 22 F -0.19 -4.69 16.40 44.97 0.74 -3.95 16 23 F -0.18 -3.00 16.80 44.97 0.76 -2.25 16 24 F -0.19 -4.91 15.88 44.97 0.71 -4.19 16 25 H 0.10 0.57 7.80 -2.38 -0.02 0.55 16 26 H 0.11 0.48 7.56 -2.39 -0.02 0.47 16 27 H 0.06 0.79 7.80 -2.39 -0.02 0.77 16 28 H 0.42 4.48 8.02 -92.71 -0.74 3.74 16 29 H 0.07 2.17 7.58 -2.39 -0.02 2.15 16 30 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.07 2.39 7.93 -2.38 -0.02 2.38 16 33 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.26 15.56 8.31 -92.70 -0.77 14.79 16 35 H 0.02 1.00 7.07 -2.39 -0.02 0.98 16 36 H 0.05 2.36 4.50 -2.39 -0.01 2.34 16 37 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -74.52 313.94 4.30 -70.23 By element: Atomic # 1 Polarization: 0.59 SS G_CDS: 0.25 Total: 0.84 kcal Atomic # 6 Polarization: 9.46 SS G_CDS: 4.05 Total: 13.51 kcal Atomic # 7 Polarization: -100.57 SS G_CDS: -3.84 Total: -104.41 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: -0.04 Total: -18.89 kcal Atomic # 9 Polarization: -12.60 SS G_CDS: 2.21 Total: -10.39 kcal Atomic # 14 Polarization: 47.44 SS G_CDS: 1.67 Total: 49.11 kcal Total: -74.52 4.30 -70.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610292551.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.832 kcal (2) G-P(sol) polarization free energy of solvation -74.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds