Wall clock time and date at job start Tue Mar 31 2020 07:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.47076 * 2 1 4 4 C 1.50705 * 109.46799 * 119.99590 * 2 1 3 5 5 O 1.21279 * 119.99297 * 120.00223 * 4 2 1 6 6 N 1.34770 * 120.00140 * 299.99937 * 4 2 1 7 7 C 1.46500 * 119.99846 * 180.02562 * 6 4 2 8 8 C 1.53042 * 109.45810 * 205.00257 * 7 6 4 9 9 C 1.53198 * 109.31086 * 178.61534 * 8 7 6 10 10 N 1.46926 * 108.89429 * 54.55921 * 9 8 7 11 11 C 1.36937 * 120.62571 * 126.46041 * 10 9 8 12 12 H 1.07997 * 120.00221 * 332.73438 * 11 10 9 13 13 C 1.38818 * 119.99512 * 152.73441 * 11 10 9 14 14 N 1.31619 * 119.99922 * 159.41180 * 13 11 10 15 15 Si 1.86800 * 120.00017 * 339.41150 * 13 11 10 16 16 H 1.48500 * 109.47149 * 92.90848 * 15 13 11 17 17 H 1.48502 * 109.46858 * 212.90584 * 15 13 11 18 18 H 1.48494 * 109.47186 * 332.90612 * 15 13 11 19 19 C 1.46952 * 118.71485 * 306.64327 * 10 9 8 20 20 C 1.53034 * 109.46260 * 84.93401 * 7 6 4 21 21 C 1.53000 * 109.47060 * 239.99850 * 2 1 3 22 22 F 1.39899 * 109.47005 * 300.00032 * 21 2 1 23 23 F 1.39893 * 109.47245 * 60.00009 * 21 2 1 24 24 F 1.39893 * 109.46782 * 180.02562 * 21 2 1 25 25 H 1.09001 * 109.46935 * 300.00153 * 1 2 3 26 26 H 1.08999 * 109.47130 * 60.00615 * 1 2 3 27 27 H 1.08999 * 109.47076 * 180.02562 * 1 2 3 28 28 H 0.97000 * 120.00196 * 0.02562 * 6 4 2 29 29 H 1.09001 * 109.46248 * 324.97132 * 7 6 4 30 30 H 1.08993 * 109.49979 * 58.66457 * 8 7 6 31 31 H 1.08993 * 109.49864 * 298.56313 * 8 7 6 32 32 H 1.09004 * 109.58728 * 174.42371 * 9 8 7 33 33 H 1.09000 * 109.58513 * 294.70045 * 9 8 7 34 34 H 0.96996 * 120.00085 * 179.97438 * 14 13 11 35 35 H 1.08999 * 109.46884 * 293.57037 * 19 10 9 36 36 H 1.09007 * 109.71303 * 173.28716 * 19 10 9 37 37 H 1.09004 * 109.49724 * 301.33190 * 20 7 6 38 38 H 1.08996 * 109.49993 * 61.42953 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 8 2.7296 -1.6964 1.1193 6 7 1.7067 -0.2498 2.4546 7 6 2.1955 -0.9401 3.6508 8 6 1.2510 -0.6609 4.8222 9 6 1.7460 -1.4120 6.0622 10 7 3.1457 -1.0433 6.3146 11 6 3.5333 -0.5745 7.5414 12 1 2.8224 -0.0628 8.1732 13 6 4.8400 -0.7570 7.9730 14 7 5.3321 0.0089 8.9236 15 14 5.8998 -2.0896 7.2047 16 1 6.6800 -1.5144 6.0797 17 1 6.8310 -2.6320 8.2265 18 1 5.0311 -3.1818 6.6972 19 6 4.1204 -1.1836 5.2239 20 6 3.5989 -0.4350 3.9933 21 6 2.0400 -0.7213 -1.2492 22 9 1.5737 -2.0403 -1.2492 23 9 1.5737 -0.0619 -2.3915 24 9 3.4390 -0.7218 -1.2489 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.1488 0.5386 2.5436 29 1 2.2320 -2.0129 3.4616 30 1 0.2466 -0.9997 4.5685 31 1 1.2333 0.4093 5.0281 32 1 1.1353 -1.1390 6.9229 33 1 1.6763 -2.4862 5.8908 34 1 6.2451 -0.1189 9.2254 35 1 4.2468 -2.2392 4.9831 36 1 5.0778 -0.7616 5.5298 37 1 4.2656 -0.6132 3.1495 38 1 3.5591 0.6330 4.2069 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610292559.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:38:08 Heat of formation + Delta-G solvation = -173.564980 kcal Electronic energy + Delta-G solvation = -24800.447868 eV Core-core repulsion = 20649.338341 eV Total energy + Delta-G solvation = -4151.109527 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.25709 -47.78517 -47.64745 -40.18204 -37.80571 -34.80358 -34.34030 -32.13261 -30.47552 -30.07656 -26.78082 -25.38311 -23.63079 -22.92273 -21.85079 -20.51711 -19.79097 -18.85491 -18.59961 -17.81739 -16.95776 -16.68941 -16.08587 -15.40083 -14.96353 -14.66421 -14.46977 -14.23598 -14.10879 -14.04922 -13.85624 -13.82731 -13.79086 -13.54651 -13.27106 -12.99108 -12.80258 -12.42713 -12.36036 -11.98916 -11.86981 -11.73415 -11.14926 -10.89461 -10.67055 -10.23899 -10.19098 -10.06719 -9.80085 -9.53387 -8.98077 -8.65039 -7.03582 -5.97994 -3.34563 2.33170 2.35158 2.89872 3.33197 3.45091 3.49322 3.52634 3.77331 3.92372 4.42099 4.47847 4.51643 4.61948 4.90242 4.99129 5.07189 5.15372 5.23084 5.35670 5.51159 5.56938 5.74760 5.95156 5.98486 6.06989 6.22315 6.34064 6.50268 6.55304 6.61399 6.62751 6.84891 7.32056 7.91942 7.99033 8.29098 8.89784 9.68696 10.05539 11.17761 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.030452 B = 0.003813 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.251583 B = 7341.493337 C = 7815.151588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.165 4.165 3 H 0.139 0.861 4 C 0.518 3.482 5 O -0.520 6.520 6 N -0.714 5.714 7 C 0.150 3.850 8 C -0.140 4.140 9 C 0.152 3.848 10 N -0.606 5.606 11 C -0.263 4.263 12 H 0.086 0.914 13 C 0.025 3.975 14 N -0.908 5.908 15 Si 0.881 3.119 16 H -0.288 1.288 17 H -0.302 1.302 18 H -0.270 1.270 19 C 0.128 3.872 20 C -0.142 4.142 21 C 0.473 3.527 22 F -0.172 7.172 23 F -0.183 7.183 24 F -0.172 7.172 25 H 0.085 0.915 26 H 0.081 0.919 27 H 0.076 0.924 28 H 0.399 0.601 29 H 0.086 0.914 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.025 0.975 34 H 0.263 0.737 35 H 0.028 0.972 36 H 0.075 0.925 37 H 0.059 0.941 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.848 2.242 -19.434 22.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.188 4.188 3 H 0.156 0.844 4 C 0.302 3.698 5 O -0.395 6.395 6 N -0.364 5.364 7 C 0.047 3.953 8 C -0.180 4.180 9 C 0.025 3.975 10 N -0.330 5.330 11 C -0.391 4.391 12 H 0.104 0.896 13 C -0.174 4.174 14 N -0.550 5.550 15 Si 0.711 3.289 16 H -0.216 1.216 17 H -0.231 1.231 18 H -0.195 1.195 19 C 0.002 3.998 20 C -0.182 4.182 21 C 0.418 3.582 22 F -0.153 7.153 23 F -0.165 7.165 24 F -0.154 7.154 25 H 0.103 0.897 26 H 0.100 0.900 27 H 0.095 0.905 28 H 0.233 0.767 29 H 0.104 0.896 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.043 0.957 34 H 0.073 0.927 35 H 0.046 0.954 36 H 0.093 0.907 37 H 0.077 0.923 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -11.192 1.528 -19.381 22.432 hybrid contribution 0.610 -0.282 -0.593 0.896 sum -10.582 1.246 -19.973 22.638 Atomic orbital electron populations 1.21840 0.89305 1.04773 1.04790 1.22677 1.01335 1.03115 0.91644 0.84363 1.19706 0.80960 0.84845 0.84326 1.90830 1.36818 1.25513 1.86317 1.46140 1.53018 1.31916 1.05355 1.21087 0.94396 0.97317 0.82483 1.22341 0.97395 1.02328 0.95942 1.20856 0.86431 0.95586 0.94628 1.44397 1.03571 1.76054 1.08964 1.18907 0.96840 1.30318 0.93059 0.89617 1.25265 0.97227 0.98333 0.96549 1.69831 1.15571 1.38001 1.31633 0.86982 0.80217 0.84253 0.77399 1.21563 1.23060 1.19462 1.21324 0.94148 0.97038 0.87270 1.22402 0.95375 1.01375 0.99055 1.19761 0.76052 0.77900 0.84458 1.93207 1.88283 1.37172 1.96650 1.93175 1.88595 1.80881 1.53840 1.93229 1.29162 1.96337 1.96637 0.89659 0.89993 0.90501 0.76686 0.89617 0.92015 0.91262 0.91284 0.95661 0.92712 0.95423 0.90654 0.92260 0.91494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 8.85 37.16 0.33 -0.55 16 2 C -0.17 -1.43 2.71 -91.77 -0.25 -1.67 16 3 H 0.14 0.82 8.14 -51.93 -0.42 0.40 16 4 C 0.52 6.49 6.89 -10.99 -0.08 6.41 16 5 O -0.52 -8.90 14.49 5.56 0.08 -8.82 16 6 N -0.71 -8.09 4.97 -53.77 -0.27 -8.36 16 7 C 0.15 2.25 2.41 -67.89 -0.16 2.08 16 8 C -0.14 -1.99 5.55 -26.61 -0.15 -2.14 16 9 C 0.15 2.78 6.51 -3.71 -0.02 2.76 16 10 N -0.61 -13.97 2.78 -172.29 -0.48 -14.45 16 11 C -0.26 -7.19 10.04 -15.06 -0.15 -7.34 16 12 H 0.09 2.48 8.05 -52.49 -0.42 2.05 16 13 C 0.03 0.73 5.23 -17.43 -0.09 0.64 16 14 N -0.91 -27.58 13.97 55.49 0.78 -26.80 16 15 Si 0.88 22.51 24.35 -169.99 -4.14 18.37 16 16 H -0.29 -7.16 6.62 56.52 0.37 -6.79 16 17 H -0.30 -7.85 7.11 56.52 0.40 -7.44 16 18 H -0.27 -6.81 6.63 56.52 0.37 -6.43 16 19 C 0.13 2.81 4.20 -3.70 -0.02 2.79 16 20 C -0.14 -2.52 5.65 -26.61 -0.15 -2.67 16 21 C 0.47 5.26 2.42 37.16 0.09 5.35 16 22 F -0.17 -2.22 15.88 2.25 0.04 -2.19 16 23 F -0.18 -1.80 16.80 2.25 0.04 -1.76 16 24 F -0.17 -2.33 16.40 2.25 0.04 -2.29 16 25 H 0.08 0.34 7.56 -51.93 -0.39 -0.05 16 26 H 0.08 0.37 7.80 -51.93 -0.41 -0.03 16 27 H 0.08 0.53 7.80 -51.93 -0.41 0.12 16 28 H 0.40 3.17 8.02 -40.82 -0.33 2.84 16 29 H 0.09 1.44 7.58 -51.93 -0.39 1.05 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.07 1.24 7.93 -51.93 -0.41 0.83 16 33 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 35 H 0.03 0.62 7.07 -51.93 -0.37 0.25 16 36 H 0.08 1.82 4.50 -51.92 -0.23 1.58 16 37 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 38 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 LS Contribution 313.94 15.07 4.73 4.73 Total: -1.00 -33.04 313.94 -4.92 -37.96 By element: Atomic # 1 Polarization: 3.02 SS G_CDS: -5.09 Total: -2.06 kcal Atomic # 6 Polarization: 6.31 SS G_CDS: -0.65 Total: 5.66 kcal Atomic # 7 Polarization: -49.63 SS G_CDS: 0.03 Total: -49.60 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: 0.08 Total: -8.82 kcal Atomic # 9 Polarization: -6.35 SS G_CDS: 0.11 Total: -6.24 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -4.14 Total: 18.37 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -33.04 -4.92 -37.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610292559.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.601 kcal (2) G-P(sol) polarization free energy of solvation -33.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds