Wall clock time and date at job start Tue Mar 31 2020 07:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.46493 * 119.99719 * 2 1 4 4 C 1.38609 * 120.00079 * 180.02562 * 2 1 3 5 5 N 1.29694 * 124.94841 * 359.97438 * 4 2 1 6 6 C 1.32115 * 116.86485 * 179.97438 * 5 4 2 7 7 C 1.50700 * 122.70966 * 180.02562 * 6 5 4 8 8 N 1.46905 * 109.47144 * 275.03075 * 7 6 5 9 9 C 1.46896 * 111.00111 * 180.02562 * 8 7 6 10 10 C 1.52998 * 109.47093 * 179.97438 * 9 8 7 11 11 H 1.09002 * 109.47438 * 304.99973 * 10 9 8 12 12 C 1.47200 * 109.47257 * 64.99808 * 10 9 8 13 13 N 7.23754 * 69.56357 * 145.75652 * 2 1 3 14 14 C 1.53009 * 109.47013 * 185.00153 * 10 9 8 15 15 C 1.50699 * 109.46841 * 175.00172 * 14 10 9 16 16 H 1.07994 * 120.00330 * 359.97438 * 15 14 10 17 17 C 1.37884 * 119.99651 * 179.97438 * 15 14 10 18 18 N 1.31514 * 120.00007 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99853 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47132 * 89.99840 * 19 17 15 21 21 H 1.48495 * 109.47170 * 209.99907 * 19 17 15 22 22 H 1.48501 * 109.47290 * 329.99784 * 19 17 15 23 23 C 1.33331 * 114.58076 * 0.02562 * 6 5 4 24 24 S 1.70958 * 124.95091 * 179.97438 * 4 2 1 25 25 H 1.08996 * 109.46538 * 269.99713 * 1 2 3 26 26 H 1.08998 * 109.47050 * 29.99914 * 1 2 3 27 27 H 1.09000 * 109.46879 * 149.99777 * 1 2 3 28 28 H 1.09003 * 109.47778 * 269.99900 * 3 2 1 29 29 H 1.09001 * 109.47737 * 30.00512 * 3 2 1 30 30 H 1.09006 * 109.47188 * 150.00352 * 3 2 1 31 31 H 1.08998 * 109.47030 * 35.02853 * 7 6 5 32 32 H 1.08999 * 109.47430 * 155.02926 * 7 6 5 33 33 H 1.00904 * 110.99625 * 303.94866 * 8 7 6 34 34 H 1.08994 * 109.47342 * 299.99829 * 9 8 7 35 35 H 1.09005 * 109.46985 * 59.99616 * 9 8 7 36 36 H 1.09001 * 109.46632 * 294.99628 * 14 10 9 37 37 H 1.09000 * 109.47015 * 54.99763 * 14 10 9 38 38 H 0.97001 * 119.99750 * 180.02562 * 18 17 15 39 39 H 1.08003 * 125.94969 * 179.97438 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1581 -1.2004 -0.0005 5 7 1.6090 -2.3753 -0.0006 6 6 2.4239 -3.4152 -0.0017 7 6 1.9282 -4.8383 -0.0024 8 7 1.6530 -5.2618 1.3771 9 6 1.1673 -6.6476 1.4155 10 6 0.8929 -7.0518 2.8653 11 1 1.7892 -6.8887 3.4639 12 6 -0.2100 -6.2376 3.4015 13 7 -1.0620 -5.6064 3.8163 14 6 0.5069 -8.5315 2.9179 15 6 0.3564 -8.9606 4.3546 16 1 0.5200 -8.2493 5.1506 17 6 0.0096 -10.2614 4.6529 18 7 -0.1902 -11.1274 3.6835 19 14 -0.1763 -10.7935 6.4338 20 1 -1.5800 -10.5816 6.8698 21 1 0.1692 -12.2322 6.5592 22 1 0.7341 -9.9895 7.2883 23 6 3.7204 -3.1039 -0.0020 24 16 3.8613 -1.3479 -0.0012 25 1 -0.3632 -0.0001 1.0277 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3633 -0.8900 -0.5139 28 1 2.3792 1.5835 -1.0276 29 1 1.6085 2.0284 0.5139 30 1 3.1500 1.1384 0.5138 31 1 1.0137 -4.9042 -0.5919 32 1 2.6881 -5.4876 -0.4370 33 1 2.4691 -5.1488 1.9596 34 1 0.2477 -6.7265 0.8357 35 1 1.9224 -7.3091 0.9908 36 1 -0.4373 -8.6794 2.3937 37 1 1.2849 -9.1271 2.4403 38 1 -0.4345 -12.0424 3.8934 39 1 4.5410 -3.8060 -0.0025 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610480878.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:55:58 Heat of formation + Delta-G solvation = 75.622963 kcal Electronic energy + Delta-G solvation = -20094.628388 eV Core-core repulsion = 16971.226823 eV Total energy + Delta-G solvation = -3123.401565 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.121 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.95604 -37.48176 -36.79964 -34.93365 -33.45993 -31.75994 -30.01579 -28.63847 -27.19382 -26.35739 -25.07417 -22.59584 -21.96469 -21.61586 -19.67489 -18.31865 -16.97367 -16.44474 -16.37280 -15.86729 -15.27831 -14.95930 -14.86173 -14.40204 -14.30653 -13.56819 -13.48907 -13.02199 -12.98506 -12.94906 -12.69727 -12.42774 -12.31532 -12.24241 -11.89424 -11.58668 -11.15330 -11.15108 -11.01357 -10.65824 -10.51352 -10.20659 -10.18950 -9.60594 -9.51518 -9.25756 -9.17721 -8.43616 -8.25840 -7.76214 -6.07381 -4.10212 0.91121 1.03556 1.68854 2.60191 2.86148 3.31753 3.38189 3.41638 3.80256 3.90003 4.25982 4.41010 4.53002 4.68548 4.85896 4.94005 4.97033 5.15228 5.17845 5.29976 5.30903 5.34661 5.52325 5.54702 5.62287 5.74324 5.81160 6.04037 6.05763 6.42601 6.44813 6.52930 6.76449 7.10712 7.44998 7.51540 7.56989 7.88256 7.92844 8.26022 8.66170 8.94682 9.55062 11.03560 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.028317 B = 0.002694 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.556912 B =10391.220212 C =10810.535368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.592 5.592 3 C 0.094 3.906 4 C 0.316 3.684 5 N -0.529 5.529 6 C 0.127 3.873 7 C 0.133 3.867 8 N -0.685 5.685 9 C 0.067 3.933 10 C 0.011 3.989 11 H 0.099 0.901 12 C 0.255 3.745 13 N -0.479 5.479 14 C 0.032 3.968 15 C -0.525 4.525 16 H 0.057 0.943 17 C 0.062 3.938 18 N -0.892 5.892 19 Si 0.891 3.109 20 H -0.280 1.280 21 H -0.285 1.285 22 H -0.273 1.273 23 C -0.299 4.299 24 S 0.077 5.923 25 H 0.053 0.947 26 H 0.067 0.933 27 H 0.080 0.920 28 H 0.058 0.942 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.088 0.912 32 H 0.050 0.950 33 H 0.341 0.659 34 H 0.078 0.922 35 H 0.051 0.949 36 H 0.027 0.973 37 H 0.038 0.962 38 H 0.262 0.738 39 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.255 21.735 -12.167 26.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.313 5.313 3 C -0.049 4.049 4 C -0.054 4.054 5 N -0.253 5.253 6 C -0.004 4.004 7 C 0.002 3.998 8 N -0.316 5.316 9 C -0.062 4.062 10 C -0.011 4.011 11 H 0.116 0.884 12 C -0.062 4.062 13 N -0.156 5.156 14 C -0.007 4.007 15 C -0.564 4.564 16 H 0.075 0.925 17 C -0.140 4.140 18 N -0.531 5.531 19 Si 0.719 3.281 20 H -0.206 1.206 21 H -0.211 1.211 22 H -0.198 1.198 23 C -0.441 4.441 24 S 0.326 5.674 25 H 0.072 0.928 26 H 0.086 0.914 27 H 0.099 0.901 28 H 0.077 0.923 29 H 0.099 0.901 30 H 0.087 0.913 31 H 0.106 0.894 32 H 0.068 0.932 33 H 0.159 0.841 34 H 0.097 0.903 35 H 0.069 0.931 36 H 0.045 0.955 37 H 0.056 0.944 38 H 0.072 0.928 39 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 8.466 23.620 -11.570 27.630 hybrid contribution 0.677 -1.922 0.733 2.165 sum 9.143 21.698 -10.837 25.920 Atomic orbital electron populations 1.21665 0.77390 1.03080 1.01996 1.45703 1.05882 1.00798 1.78869 1.21780 0.96934 0.84152 1.02034 1.23569 0.92862 0.90035 0.98931 1.66182 1.37404 0.96093 1.25660 1.19754 0.87796 0.94943 0.97944 1.20408 1.00501 0.87487 0.91435 1.60435 1.38808 1.23545 1.08854 1.22088 1.00668 0.86911 0.96563 1.19206 0.92081 0.96367 0.93483 0.88353 1.28946 0.93791 0.91413 0.92075 1.81084 1.11750 1.12415 1.10356 1.19170 0.98065 0.85263 0.98191 1.21152 1.47709 0.95579 0.91921 0.92504 1.24955 0.95066 0.96693 0.97287 1.69940 1.47263 1.04343 1.31534 0.86592 0.78602 0.77743 0.85141 1.20649 1.21124 1.19755 1.26263 1.00797 0.96094 1.20908 1.83706 1.04420 1.04710 1.74570 0.92799 0.91398 0.90139 0.92334 0.90067 0.91337 0.89362 0.93221 0.84061 0.90307 0.93094 0.95507 0.94409 0.92820 0.80960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.91 10.56 59.85 0.63 1.55 16 2 N -0.59 -5.75 3.38 -191.88 -0.65 -6.40 16 3 C 0.09 0.55 10.41 59.84 0.62 1.17 16 4 C 0.32 3.83 7.74 -87.68 -0.68 3.15 16 5 N -0.53 -7.61 9.80 -11.36 -0.11 -7.72 16 6 C 0.13 1.65 6.25 -84.18 -0.53 1.13 16 7 C 0.13 1.65 6.12 -4.97 -0.03 1.62 16 8 N -0.68 -9.69 6.19 -115.06 -0.71 -10.40 16 9 C 0.07 1.02 5.05 -3.83 -0.02 1.00 16 10 C 0.01 0.20 2.35 -93.40 -0.22 -0.02 16 11 H 0.10 1.71 8.14 -51.93 -0.42 1.28 16 12 C 0.25 5.56 13.68 -20.67 -0.28 5.27 16 13 N -0.48 -11.42 18.56 42.26 0.78 -10.64 16 14 C 0.03 0.74 4.42 -27.88 -0.12 0.62 16 15 C -0.53 -14.15 8.60 -34.44 -0.30 -14.45 16 16 H 0.06 1.53 7.59 -52.49 -0.40 1.13 16 17 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 18 N -0.89 -25.72 13.29 55.43 0.74 -24.99 16 19 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 20 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 23 C -0.30 -3.25 11.08 29.02 0.32 -2.93 16 24 S 0.08 0.76 21.68 -107.50 -2.33 -1.57 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.40 8.07 -51.93 -0.42 -0.02 16 27 H 0.08 0.86 7.62 -51.93 -0.40 0.46 16 28 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.08 0.33 8.07 -51.93 -0.42 -0.09 16 30 H 0.07 0.39 7.05 -51.93 -0.37 0.02 16 31 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.05 0.51 8.10 -51.93 -0.42 0.09 16 33 H 0.34 4.44 8.72 -39.29 -0.34 4.09 16 34 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 39 H 0.17 1.48 8.06 -52.48 -0.42 1.06 16 LS Contribution 352.20 15.07 5.31 5.31 Total: -1.00 -33.32 352.20 -8.39 -41.72 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -5.70 Total: -1.54 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: -0.70 Total: -0.26 kcal Atomic # 7 Polarization: -60.20 SS G_CDS: 0.05 Total: -60.15 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: 0.76 SS G_CDS: -2.33 Total: -1.57 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.32 -8.39 -41.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610480878.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.339 kcal (2) G-P(sol) polarization free energy of solvation -33.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds