Wall clock time and date at job start Tue Mar 31 2020 07:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.46493 * 119.99719 * 2 1 4 4 C 1.38609 * 120.00079 * 180.02562 * 2 1 3 5 5 N 1.29694 * 124.94841 * 359.97438 * 4 2 1 6 6 C 1.32115 * 116.86485 * 179.97438 * 5 4 2 7 7 C 1.50700 * 122.70966 * 180.02562 * 6 5 4 8 8 N 1.46905 * 109.47144 * 275.03075 * 7 6 5 9 9 C 1.46896 * 111.00111 * 180.02562 * 8 7 6 10 10 C 1.52998 * 109.47093 * 179.97438 * 9 8 7 11 11 H 1.09002 * 109.47438 * 304.99973 * 10 9 8 12 12 C 1.47200 * 109.47257 * 64.99808 * 10 9 8 13 13 N 7.23754 * 69.56357 * 145.75652 * 2 1 3 14 14 C 1.53009 * 109.47013 * 185.00153 * 10 9 8 15 15 C 1.50699 * 109.46841 * 175.00172 * 14 10 9 16 16 H 1.07994 * 120.00330 * 359.97438 * 15 14 10 17 17 C 1.37884 * 119.99651 * 179.97438 * 15 14 10 18 18 N 1.31514 * 120.00007 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99853 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47132 * 89.99840 * 19 17 15 21 21 H 1.48495 * 109.47170 * 209.99907 * 19 17 15 22 22 H 1.48501 * 109.47290 * 329.99784 * 19 17 15 23 23 C 1.33331 * 114.58076 * 0.02562 * 6 5 4 24 24 S 1.70958 * 124.95091 * 179.97438 * 4 2 1 25 25 H 1.08996 * 109.46538 * 269.99713 * 1 2 3 26 26 H 1.08998 * 109.47050 * 29.99914 * 1 2 3 27 27 H 1.09000 * 109.46879 * 149.99777 * 1 2 3 28 28 H 1.09003 * 109.47778 * 269.99900 * 3 2 1 29 29 H 1.09001 * 109.47737 * 30.00512 * 3 2 1 30 30 H 1.09006 * 109.47188 * 150.00352 * 3 2 1 31 31 H 1.08998 * 109.47030 * 35.02853 * 7 6 5 32 32 H 1.08999 * 109.47430 * 155.02926 * 7 6 5 33 33 H 1.00904 * 110.99625 * 303.94866 * 8 7 6 34 34 H 1.08994 * 109.47342 * 299.99829 * 9 8 7 35 35 H 1.09005 * 109.46985 * 59.99616 * 9 8 7 36 36 H 1.09001 * 109.46632 * 294.99628 * 14 10 9 37 37 H 1.09000 * 109.47015 * 54.99763 * 14 10 9 38 38 H 0.97001 * 119.99750 * 180.02562 * 18 17 15 39 39 H 1.08003 * 125.94969 * 179.97438 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1581 -1.2004 -0.0005 5 7 1.6090 -2.3753 -0.0006 6 6 2.4239 -3.4152 -0.0017 7 6 1.9282 -4.8383 -0.0024 8 7 1.6530 -5.2618 1.3771 9 6 1.1673 -6.6476 1.4155 10 6 0.8929 -7.0518 2.8653 11 1 1.7892 -6.8887 3.4639 12 6 -0.2100 -6.2376 3.4015 13 7 -1.0620 -5.6064 3.8163 14 6 0.5069 -8.5315 2.9179 15 6 0.3564 -8.9606 4.3546 16 1 0.5200 -8.2493 5.1506 17 6 0.0096 -10.2614 4.6529 18 7 -0.1902 -11.1274 3.6835 19 14 -0.1763 -10.7935 6.4338 20 1 -1.5800 -10.5816 6.8698 21 1 0.1692 -12.2322 6.5592 22 1 0.7341 -9.9895 7.2883 23 6 3.7204 -3.1039 -0.0020 24 16 3.8613 -1.3479 -0.0012 25 1 -0.3632 -0.0001 1.0277 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3633 -0.8900 -0.5139 28 1 2.3792 1.5835 -1.0276 29 1 1.6085 2.0284 0.5139 30 1 3.1500 1.1384 0.5138 31 1 1.0137 -4.9042 -0.5919 32 1 2.6881 -5.4876 -0.4370 33 1 2.4691 -5.1488 1.9596 34 1 0.2477 -6.7265 0.8357 35 1 1.9224 -7.3091 0.9908 36 1 -0.4373 -8.6794 2.3937 37 1 1.2849 -9.1271 2.4403 38 1 -0.4345 -12.0424 3.8934 39 1 4.5410 -3.8060 -0.0025 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610480878.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:55:58 Heat of formation + Delta-G solvation = 53.769626 kcal Electronic energy + Delta-G solvation = -20095.576019 eV Core-core repulsion = 16971.226823 eV Total energy + Delta-G solvation = -3124.349197 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.121 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.80819 -38.76116 -37.76892 -36.35478 -35.33466 -33.41296 -31.07057 -29.24868 -28.67024 -27.17422 -26.35872 -24.02158 -23.46527 -22.67560 -20.51223 -19.22186 -18.49866 -18.27590 -17.28236 -16.71470 -16.53011 -16.11386 -15.93047 -15.70132 -15.49997 -14.83643 -14.54523 -14.32672 -14.08666 -13.78647 -13.76793 -13.62510 -13.50252 -13.33539 -13.21152 -13.00750 -12.96114 -12.70735 -12.47376 -12.34303 -12.02512 -11.87844 -11.40334 -11.16214 -10.92795 -10.54694 -10.45519 -10.04815 -9.30573 -8.51692 -8.18594 -6.26518 0.08306 0.25095 0.87876 1.40291 1.42688 1.51762 1.91193 1.99492 2.07218 2.13816 2.42392 3.16684 3.30179 3.40480 3.58743 4.11378 4.20124 4.30870 4.33684 4.41996 4.43827 4.52219 4.67441 4.69078 4.76801 4.79001 4.82770 4.87546 4.90015 5.03498 5.19629 5.48578 5.64102 5.80415 5.81528 5.98469 6.02298 6.22841 6.51084 6.84365 6.94586 7.10915 7.41792 8.92322 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.028317 B = 0.002694 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.556912 B =10391.220212 C =10810.535368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.596 5.596 3 C 0.088 3.912 4 C 0.293 3.707 5 N -0.572 5.572 6 C 0.103 3.897 7 C 0.139 3.861 8 N -0.698 5.698 9 C 0.081 3.919 10 C 0.021 3.979 11 H 0.121 0.879 12 C 0.265 3.735 13 N -0.519 5.519 14 C 0.039 3.961 15 C -0.539 4.539 16 H 0.053 0.947 17 C 0.011 3.989 18 N -0.923 5.923 19 Si 0.948 3.052 20 H -0.285 1.285 21 H -0.277 1.277 22 H -0.264 1.264 23 C -0.298 4.298 24 S 0.123 5.877 25 H 0.044 0.956 26 H 0.100 0.900 27 H 0.055 0.945 28 H 0.073 0.927 29 H 0.101 0.899 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.349 0.651 34 H 0.068 0.932 35 H 0.077 0.923 36 H 0.000 1.000 37 H 0.040 0.960 38 H 0.264 0.736 39 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.162 22.902 -12.237 28.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.317 5.317 3 C -0.054 4.054 4 C -0.077 4.077 5 N -0.299 5.299 6 C -0.029 4.029 7 C 0.007 3.993 8 N -0.331 5.331 9 C -0.049 4.049 10 C -0.001 4.001 11 H 0.138 0.862 12 C -0.051 4.051 13 N -0.197 5.197 14 C 0.000 4.000 15 C -0.577 4.577 16 H 0.071 0.929 17 C -0.188 4.188 18 N -0.563 5.563 19 Si 0.774 3.226 20 H -0.212 1.212 21 H -0.202 1.202 22 H -0.188 1.188 23 C -0.440 4.440 24 S 0.372 5.628 25 H 0.063 0.937 26 H 0.118 0.882 27 H 0.074 0.926 28 H 0.091 0.909 29 H 0.120 0.880 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.168 0.832 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.018 0.982 37 H 0.058 0.942 38 H 0.073 0.927 39 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 10.391 24.824 -11.641 29.321 hybrid contribution 0.106 -2.199 0.725 2.317 sum 10.497 22.625 -10.917 27.226 Atomic orbital electron populations 1.21656 0.77454 1.03442 1.01498 1.46069 1.06283 1.01245 1.78087 1.22038 0.97067 0.82959 1.03335 1.23959 0.94420 0.90283 0.99031 1.66171 1.39113 0.97238 1.27334 1.19828 0.88573 0.94815 0.99654 1.20372 1.00650 0.88096 0.90138 1.60319 1.39707 1.22659 1.10402 1.21881 1.01184 0.88265 0.93577 1.19218 0.91564 0.93015 0.96311 0.86167 1.29576 0.93647 0.90865 0.91024 1.81079 1.12943 1.13797 1.11905 1.18993 0.96820 0.88205 0.96007 1.21563 1.46980 0.95575 0.93580 0.92868 1.25709 0.95108 0.97057 1.00910 1.70030 1.48341 1.04673 1.33271 0.85704 0.78209 0.77806 0.80929 1.21165 1.20250 1.18824 1.26603 1.00722 0.97441 1.19251 1.83461 1.02111 1.03565 1.73663 0.93713 0.88202 0.92562 0.90858 0.88035 0.91110 0.90899 0.90550 0.83174 0.91339 0.90485 0.98165 0.94199 0.92709 0.78692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.81 10.56 127.77 1.35 3.16 16 2 N -0.60 -11.00 3.38 -760.98 -2.57 -13.57 16 3 C 0.09 0.84 10.41 127.77 1.33 2.17 16 4 C 0.29 6.88 7.74 179.32 1.39 8.27 16 5 N -0.57 -16.47 9.80 -189.86 -1.86 -18.33 16 6 C 0.10 2.57 6.25 41.41 0.26 2.83 16 7 C 0.14 3.28 6.12 85.56 0.52 3.80 16 8 N -0.70 -18.87 6.19 -517.94 -3.21 -22.07 16 9 C 0.08 2.33 5.05 86.30 0.44 2.76 16 10 C 0.02 0.76 2.35 -12.60 -0.03 0.73 16 11 H 0.12 3.92 8.14 -2.39 -0.02 3.90 16 12 C 0.26 11.53 13.68 89.41 1.22 12.75 16 13 N -0.52 -24.98 18.56 20.04 0.37 -24.61 16 14 C 0.04 1.79 4.42 29.85 0.13 1.92 16 15 C -0.54 -28.86 8.60 25.60 0.22 -28.64 16 16 H 0.05 2.83 7.59 -2.91 -0.02 2.81 16 17 C 0.01 0.61 5.46 84.66 0.46 1.07 16 18 N -0.92 -53.36 13.29 21.45 0.28 -53.08 16 19 Si 0.95 43.87 29.54 68.60 2.03 45.90 16 20 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 21 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 22 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 23 C -0.30 -5.89 11.08 66.71 0.74 -5.15 16 24 S 0.12 2.19 21.68 -56.49 -1.22 0.96 16 25 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.10 1.03 8.07 -2.39 -0.02 1.01 16 27 H 0.06 1.25 7.62 -2.39 -0.02 1.23 16 28 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.10 0.56 8.07 -2.39 -0.02 0.54 16 30 H 0.07 0.65 7.05 -2.38 -0.02 0.63 16 31 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.08 1.37 8.10 -2.39 -0.02 1.35 16 33 H 0.35 8.40 8.72 -89.69 -0.78 7.62 16 34 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 36 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 37 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 39 H 0.20 2.75 8.06 -2.91 -0.02 2.73 16 Total: -1.00 -72.11 352.20 2.12 -69.99 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: 0.27 Total: 9.13 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: 8.03 Total: 5.69 kcal Atomic # 7 Polarization: -124.68 SS G_CDS: -6.98 Total: -131.66 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Atomic # 16 Polarization: 2.19 SS G_CDS: -1.22 Total: 0.96 kcal Total: -72.11 2.12 -69.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610480878.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.756 kcal (2) G-P(sol) polarization free energy of solvation -72.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds