Wall clock time and date at job start Tue Mar 31 2020 06:50:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47168 * 2 1 4 4 H 1.08997 * 109.47295 * 305.00637 * 3 2 1 5 5 C 1.50695 * 109.46949 * 185.00095 * 3 2 1 6 6 H 1.08007 * 119.99844 * 240.00407 * 5 3 2 7 7 C 1.37870 * 120.00161 * 60.00347 * 5 3 2 8 8 N 1.31516 * 120.00131 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00210 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47284 * 59.99866 * 9 7 5 11 11 H 1.48502 * 109.47514 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47229 * 300.00080 * 9 7 5 13 13 N 1.46503 * 109.46948 * 65.00234 * 3 2 1 14 14 C 1.34776 * 120.00045 * 275.00031 * 13 3 2 15 15 O 1.21591 * 119.99599 * 359.97438 * 14 13 3 16 16 N 1.34774 * 120.00324 * 180.02562 * 14 13 3 17 17 C 1.46498 * 120.00375 * 185.05694 * 16 14 13 18 18 C 1.53002 * 112.85003 * 71.45382 * 17 16 14 19 19 F 1.39898 * 109.47183 * 283.72713 * 18 17 16 20 20 F 1.39894 * 109.47359 * 43.73175 * 18 17 16 21 21 F 1.39903 * 109.46827 * 163.72973 * 18 17 16 22 22 C 1.53787 * 113.61069 * 300.25905 * 17 16 14 23 23 C 1.53777 * 87.07891 * 270.79806 * 22 17 16 24 24 C 1.53777 * 87.17608 * 334.52587 * 23 22 17 25 25 H 1.09008 * 109.47092 * 59.99360 * 1 2 3 26 26 H 1.09002 * 109.47706 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.46853 * 299.99860 * 1 2 3 28 28 H 1.09001 * 109.47152 * 240.00448 * 2 1 3 29 29 H 1.09000 * 109.46967 * 119.99988 * 2 1 3 30 30 H 0.97006 * 120.00384 * 180.02562 * 8 7 5 31 31 H 0.96999 * 119.99880 * 94.99496 * 13 3 2 32 32 H 0.96998 * 119.99494 * 5.05161 * 16 14 13 33 33 H 1.08997 * 113.61190 * 156.25229 * 22 17 16 34 34 H 1.08994 * 113.61557 * 25.34978 * 22 17 16 35 35 H 1.09005 * 113.61366 * 89.12420 * 23 22 17 36 36 H 1.09003 * 113.61670 * 219.93331 * 23 22 17 37 37 H 1.09008 * 113.61537 * 140.02145 * 24 23 22 38 38 H 1.08996 * 113.61647 * 270.92390 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8888 0.6524 7 6 4.1432 0.8784 -1.2280 8 7 3.4062 0.3367 -2.1729 9 14 6.0049 0.8812 -1.3818 10 1 6.5975 0.1472 -0.2350 11 1 6.3978 0.2167 -2.6504 12 1 6.4994 2.2815 -1.3821 13 7 1.6525 2.0975 1.2519 14 6 0.4352 2.6644 1.3671 15 8 -0.3412 2.6326 0.4318 16 7 0.0788 3.2673 2.5185 17 6 -1.2814 3.7857 2.6835 18 6 -2.3254 2.6774 2.8340 19 9 -2.5801 2.1037 1.5837 20 9 -1.8423 1.6970 3.7072 21 9 -3.5086 3.2181 3.3487 22 6 -1.6632 4.8549 1.6462 23 6 -1.0932 5.8952 2.6249 24 6 -1.3973 4.8916 3.7497 25 1 -0.3634 0.5140 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8901 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8292 -0.0618 -2.9496 31 1 2.2720 2.1230 1.9978 32 1 0.7230 3.3580 3.2380 33 1 -2.7378 4.9465 1.4888 34 1 -1.1029 4.7790 0.7144 35 1 -0.0291 6.0873 2.4869 36 1 -1.6841 6.8092 2.6836 37 1 -0.6223 4.8453 4.5149 38 1 -2.3993 4.9932 4.1663 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619569546.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:12 Heat of formation + Delta-G solvation = -162.824667 kcal Electronic energy + Delta-G solvation = -25746.967507 eV Core-core repulsion = 21596.323715 eV Total energy + Delta-G solvation = -4150.643792 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.85294 -47.45257 -47.19370 -40.23929 -38.21163 -35.02837 -33.15224 -32.14867 -30.58745 -27.91859 -26.72272 -26.03714 -23.37370 -22.83315 -21.12640 -19.58083 -19.44320 -18.30077 -18.21468 -18.00712 -17.70956 -16.23081 -15.63153 -15.22758 -14.72791 -14.48948 -14.26269 -14.19098 -14.03434 -13.77921 -13.45879 -13.41010 -13.36759 -12.94327 -12.60044 -12.53917 -12.25043 -12.09297 -11.51397 -11.22962 -11.12766 -10.99316 -10.95839 -10.80688 -10.68400 -10.29516 -10.12749 -9.58623 -9.30425 -9.01329 -8.92669 -8.48370 -7.77355 -6.11036 -4.20483 2.76278 3.05061 3.25688 3.31413 3.32660 3.72244 3.78035 4.05422 4.18476 4.31935 4.52526 4.60766 4.81884 4.86082 5.17391 5.21317 5.39071 5.44912 5.64758 5.75990 6.02124 6.13017 6.47512 6.55362 6.60974 6.73351 7.02224 7.17243 7.37823 7.43693 7.51337 7.66033 7.89786 8.00720 8.21778 8.76355 8.88304 9.30292 9.48770 10.94175 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.026800 B = 0.004649 C = 0.004292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.511439 B = 6021.990688 C = 6521.902533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.128 4.128 3 C 0.288 3.712 4 H 0.050 0.950 5 C -0.534 4.534 6 H 0.059 0.941 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.720 5.720 14 C 0.692 3.308 15 O -0.571 6.571 16 N -0.731 5.731 17 C 0.128 3.872 18 C 0.444 3.556 19 F -0.160 7.160 20 F -0.186 7.186 21 F -0.188 7.188 22 C -0.128 4.128 23 C -0.132 4.132 24 C -0.132 4.132 25 H 0.049 0.951 26 H 0.019 0.981 27 H 0.039 0.961 28 H 0.098 0.902 29 H 0.029 0.971 30 H 0.265 0.735 31 H 0.384 0.616 32 H 0.400 0.600 33 H 0.093 0.907 34 H 0.102 0.898 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.764 8.693 12.457 17.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.167 4.167 3 C 0.187 3.813 4 H 0.068 0.932 5 C -0.573 4.573 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.371 5.371 14 C 0.392 3.608 15 O -0.448 6.448 16 N -0.389 5.389 17 C 0.036 3.964 18 C 0.387 3.613 19 F -0.142 7.142 20 F -0.167 7.167 21 F -0.170 7.170 22 C -0.166 4.166 23 C -0.169 4.169 24 C -0.169 4.169 25 H 0.068 0.932 26 H 0.038 0.962 27 H 0.058 0.942 28 H 0.116 0.884 29 H 0.048 0.952 30 H 0.075 0.925 31 H 0.216 0.784 32 H 0.235 0.765 33 H 0.111 0.889 34 H 0.120 0.880 35 H 0.106 0.894 36 H 0.096 0.904 37 H 0.103 0.897 38 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -9.438 8.475 11.326 17.005 hybrid contribution 1.400 -0.427 0.701 1.622 sum -8.038 8.048 12.027 16.554 Atomic orbital electron populations 1.21803 0.98115 0.97824 1.01380 1.21955 0.92782 0.99893 1.02082 1.18685 0.93829 0.88860 0.79972 0.93246 1.21186 0.90731 1.39128 1.06239 0.92235 1.24868 0.98523 0.94829 0.95394 1.69890 1.35184 1.37464 1.09344 0.86519 0.84921 0.78248 0.77440 1.20219 1.21142 1.20240 1.45796 1.13475 1.58631 1.19220 1.16141 0.83775 0.78697 0.82212 1.90943 1.51840 1.64220 1.37796 1.44753 1.10507 1.65109 1.18482 1.22163 0.82859 0.89158 1.02237 1.21057 0.82011 0.83850 0.74341 1.93294 1.94443 1.85765 1.40654 1.93151 1.87877 1.65398 1.70282 1.93112 1.50522 1.85912 1.87422 1.23231 1.02448 0.91950 0.99013 1.22783 1.02155 0.97070 0.94921 1.23359 1.04242 0.93042 0.96298 0.93169 0.96183 0.94171 0.88373 0.95214 0.92503 0.78409 0.76461 0.88857 0.87953 0.89364 0.90360 0.89667 0.87529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.11 8.51 37.16 0.32 -2.80 16 2 C -0.13 -3.16 5.45 -26.73 -0.15 -3.30 16 3 C 0.29 7.17 2.24 -69.08 -0.15 7.01 16 4 H 0.05 1.43 7.58 -51.93 -0.39 1.03 16 5 C -0.53 -13.90 8.73 -34.45 -0.30 -14.20 16 6 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.59 11.29 55.43 0.63 -23.96 16 9 Si 0.90 20.43 29.54 -169.99 -5.02 15.41 16 10 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 11 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 13 N -0.72 -14.54 5.03 -59.81 -0.30 -14.84 16 14 C 0.69 13.24 6.70 -86.92 -0.58 12.66 16 15 O -0.57 -12.79 10.20 5.29 0.05 -12.74 16 16 N -0.73 -10.36 4.87 -51.52 -0.25 -10.61 16 17 C 0.13 1.66 0.75 -130.86 -0.10 1.56 16 18 C 0.44 6.66 2.76 37.16 0.10 6.76 16 19 F -0.16 -2.96 15.27 2.25 0.03 -2.93 16 20 F -0.19 -2.91 17.05 2.25 0.04 -2.87 16 21 F -0.19 -2.47 15.82 2.25 0.04 -2.43 16 22 C -0.13 -1.60 6.61 -25.92 -0.17 -1.77 16 23 C -0.13 -1.20 7.98 -25.92 -0.21 -1.41 16 24 C -0.13 -1.16 7.27 -25.78 -0.19 -1.35 16 25 H 0.05 1.24 7.84 -51.92 -0.41 0.83 16 26 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.04 0.92 5.65 -51.92 -0.29 0.63 16 28 H 0.10 2.67 5.95 -51.93 -0.31 2.36 16 29 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 31 H 0.38 6.72 8.56 -40.82 -0.35 6.37 16 32 H 0.40 4.46 8.74 -40.82 -0.36 4.10 16 33 H 0.09 1.07 8.06 -51.93 -0.42 0.65 16 34 H 0.10 1.60 6.72 -51.93 -0.35 1.25 16 35 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.61 8.12 -51.92 -0.42 0.19 16 38 H 0.11 0.84 7.02 -51.93 -0.36 0.48 16 LS Contribution 315.54 15.07 4.76 4.76 Total: -1.00 -30.09 315.54 -6.45 -36.54 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -4.89 Total: 8.84 kcal Atomic # 6 Polarization: 6.37 SS G_CDS: -1.52 Total: 4.85 kcal Atomic # 7 Polarization: -49.48 SS G_CDS: 0.07 Total: -49.41 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: 0.05 Total: -12.74 kcal Atomic # 9 Polarization: -8.34 SS G_CDS: 0.11 Total: -8.23 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.09 -6.45 -36.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619569546.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.289 kcal (2) G-P(sol) polarization free energy of solvation -30.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds