Wall clock time and date at job start Tue Mar 31 2020 06:50:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47168 * 2 1 4 4 H 1.08997 * 109.47295 * 305.00637 * 3 2 1 5 5 C 1.50695 * 109.46949 * 185.00095 * 3 2 1 6 6 H 1.08007 * 119.99844 * 240.00407 * 5 3 2 7 7 C 1.37870 * 120.00161 * 60.00347 * 5 3 2 8 8 N 1.31516 * 120.00131 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00210 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47284 * 59.99866 * 9 7 5 11 11 H 1.48502 * 109.47514 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47229 * 300.00080 * 9 7 5 13 13 N 1.46503 * 109.46948 * 65.00234 * 3 2 1 14 14 C 1.34776 * 120.00045 * 275.00031 * 13 3 2 15 15 O 1.21591 * 119.99599 * 359.97438 * 14 13 3 16 16 N 1.34774 * 120.00324 * 180.02562 * 14 13 3 17 17 C 1.46498 * 120.00375 * 185.05694 * 16 14 13 18 18 C 1.53002 * 112.85003 * 71.45382 * 17 16 14 19 19 F 1.39898 * 109.47183 * 283.72713 * 18 17 16 20 20 F 1.39894 * 109.47359 * 43.73175 * 18 17 16 21 21 F 1.39903 * 109.46827 * 163.72973 * 18 17 16 22 22 C 1.53787 * 113.61069 * 300.25905 * 17 16 14 23 23 C 1.53777 * 87.07891 * 270.79806 * 22 17 16 24 24 C 1.53777 * 87.17608 * 334.52587 * 23 22 17 25 25 H 1.09008 * 109.47092 * 59.99360 * 1 2 3 26 26 H 1.09002 * 109.47706 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.46853 * 299.99860 * 1 2 3 28 28 H 1.09001 * 109.47152 * 240.00448 * 2 1 3 29 29 H 1.09000 * 109.46967 * 119.99988 * 2 1 3 30 30 H 0.97006 * 120.00384 * 180.02562 * 8 7 5 31 31 H 0.96999 * 119.99880 * 94.99496 * 13 3 2 32 32 H 0.96998 * 119.99494 * 5.05161 * 16 14 13 33 33 H 1.08997 * 113.61190 * 156.25229 * 22 17 16 34 34 H 1.08994 * 113.61557 * 25.34978 * 22 17 16 35 35 H 1.09005 * 113.61366 * 89.12420 * 23 22 17 36 36 H 1.09003 * 113.61670 * 219.93331 * 23 22 17 37 37 H 1.09008 * 113.61537 * 140.02145 * 24 23 22 38 38 H 1.08996 * 113.61647 * 270.92390 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8888 0.6524 7 6 4.1432 0.8784 -1.2280 8 7 3.4062 0.3367 -2.1729 9 14 6.0049 0.8812 -1.3818 10 1 6.5975 0.1472 -0.2350 11 1 6.3978 0.2167 -2.6504 12 1 6.4994 2.2815 -1.3821 13 7 1.6525 2.0975 1.2519 14 6 0.4352 2.6644 1.3671 15 8 -0.3412 2.6326 0.4318 16 7 0.0788 3.2673 2.5185 17 6 -1.2814 3.7857 2.6835 18 6 -2.3254 2.6774 2.8340 19 9 -2.5801 2.1037 1.5837 20 9 -1.8423 1.6970 3.7072 21 9 -3.5086 3.2181 3.3487 22 6 -1.6632 4.8549 1.6462 23 6 -1.0932 5.8952 2.6249 24 6 -1.3973 4.8916 3.7497 25 1 -0.3634 0.5140 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8901 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8292 -0.0618 -2.9496 31 1 2.2720 2.1230 1.9978 32 1 0.7230 3.3580 3.2380 33 1 -2.7378 4.9465 1.4888 34 1 -1.1029 4.7790 0.7144 35 1 -0.0291 6.0873 2.4869 36 1 -1.6841 6.8092 2.6836 37 1 -0.6223 4.8453 4.5149 38 1 -2.3993 4.9932 4.1663 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619569546.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:12 Heat of formation + Delta-G solvation = -183.013851 kcal Electronic energy + Delta-G solvation = -25747.842976 eV Core-core repulsion = 21596.323715 eV Total energy + Delta-G solvation = -4151.519261 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -51.04839 -48.60588 -48.48620 -41.50551 -39.52305 -36.84270 -34.63186 -33.97103 -32.36442 -29.24655 -28.47213 -26.89379 -25.09817 -24.14765 -22.62174 -21.30348 -20.66507 -19.82805 -19.37261 -19.25253 -18.90573 -17.99240 -17.16638 -16.56612 -16.36394 -15.88937 -15.48163 -15.45326 -15.33978 -15.06863 -14.97546 -14.70300 -14.64530 -14.54258 -14.00220 -13.94085 -13.51207 -13.34816 -13.16973 -13.09460 -12.86231 -12.63778 -12.19744 -12.08178 -11.98831 -11.87715 -11.61250 -11.54472 -11.04611 -10.87330 -10.50787 -10.23889 -9.52107 -8.13311 -6.30413 1.46136 1.48409 1.54586 1.57972 1.81675 2.33366 2.44169 2.78378 2.89002 3.11720 3.16636 3.38252 3.64483 3.68984 3.79744 4.21096 4.50852 4.58616 4.63294 4.72561 4.77632 4.90653 5.01905 5.06943 5.09248 5.18776 5.26585 5.46549 5.51288 5.56634 5.64679 5.78609 5.88974 6.19657 6.29262 6.78160 7.33124 7.38373 7.82021 8.91963 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.026800 B = 0.004649 C = 0.004292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.511439 B = 6021.990688 C = 6521.902533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.120 4.120 3 C 0.300 3.700 4 H 0.000 1.000 5 C -0.546 4.546 6 H 0.072 0.928 7 C 0.016 3.984 8 N -0.916 5.916 9 Si 0.970 3.030 10 H -0.266 1.266 11 H -0.288 1.288 12 H -0.271 1.271 13 N -0.719 5.719 14 C 0.691 3.309 15 O -0.606 6.606 16 N -0.711 5.711 17 C 0.114 3.886 18 C 0.437 3.563 19 F -0.187 7.187 20 F -0.191 7.191 21 F -0.176 7.176 22 C -0.138 4.138 23 C -0.117 4.117 24 C -0.110 4.110 25 H 0.025 0.975 26 H 0.037 0.963 27 H 0.040 0.960 28 H 0.071 0.929 29 H 0.037 0.963 30 H 0.264 0.736 31 H 0.400 0.600 32 H 0.418 0.582 33 H 0.100 0.900 34 H 0.063 0.937 35 H 0.087 0.913 36 H 0.103 0.897 37 H 0.111 0.889 38 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.088 9.955 14.990 19.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.160 4.160 3 C 0.196 3.804 4 H 0.018 0.982 5 C -0.584 4.584 6 H 0.090 0.910 7 C -0.184 4.184 8 N -0.554 5.554 9 Si 0.795 3.205 10 H -0.190 1.190 11 H -0.214 1.214 12 H -0.196 1.196 13 N -0.372 5.372 14 C 0.391 3.609 15 O -0.485 6.485 16 N -0.370 5.370 17 C 0.022 3.978 18 C 0.381 3.619 19 F -0.169 7.169 20 F -0.172 7.172 21 F -0.157 7.157 22 C -0.176 4.176 23 C -0.155 4.155 24 C -0.148 4.148 25 H 0.044 0.956 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.090 0.910 29 H 0.056 0.944 30 H 0.073 0.927 31 H 0.234 0.766 32 H 0.257 0.743 33 H 0.118 0.882 34 H 0.082 0.918 35 H 0.105 0.895 36 H 0.122 0.878 37 H 0.130 0.870 38 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -8.762 9.768 13.938 19.143 hybrid contribution 1.082 -0.802 -0.087 1.350 sum -7.680 8.966 13.851 18.199 Atomic orbital electron populations 1.21614 0.97160 0.98495 1.00181 1.21809 0.93464 0.99666 1.01028 1.18195 0.93321 0.88512 0.80389 0.98207 1.21537 0.91367 1.38900 1.06629 0.90973 1.25752 1.03212 0.94414 0.95041 1.70052 1.37115 1.38343 1.09892 0.85429 0.79185 0.78431 0.77442 1.19043 1.21381 1.19573 1.45412 1.14484 1.58942 1.18343 1.16245 0.82959 0.78612 0.83106 1.90933 1.52700 1.65299 1.39569 1.44444 1.11638 1.63683 1.17224 1.22617 0.81230 0.88989 1.04958 1.21448 0.83010 0.84107 0.73340 1.93243 1.94704 1.86354 1.42561 1.93135 1.87972 1.65865 1.70260 1.93128 1.49934 1.85577 1.87083 1.23284 1.02638 0.93724 0.97966 1.22749 1.02281 0.97304 0.93123 1.23418 1.06130 0.89517 0.95718 0.95555 0.94431 0.94089 0.91024 0.94417 0.92655 0.76615 0.74339 0.88174 0.91794 0.89473 0.87805 0.87046 0.85873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.58 8.51 71.98 0.61 -4.96 16 2 C -0.12 -6.07 5.45 30.60 0.17 -5.90 16 3 C 0.30 15.27 2.24 44.24 0.10 15.37 16 4 H 0.00 0.00 7.58 -2.39 -0.02 -0.02 16 5 C -0.55 -28.47 8.73 25.60 0.22 -28.25 16 6 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 7 C 0.02 0.85 5.29 84.65 0.45 1.30 16 8 N -0.92 -52.39 11.29 21.44 0.24 -52.15 16 9 Si 0.97 41.69 29.54 68.60 2.03 43.71 16 10 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 11 H -0.29 -12.39 7.11 99.48 0.71 -11.68 16 12 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 13 N -0.72 -29.04 5.03 -461.41 -2.32 -31.36 16 14 C 0.69 26.56 6.70 179.06 1.20 27.76 16 15 O -0.61 -28.12 10.20 -4.00 -0.04 -28.16 16 16 N -0.71 -19.18 4.87 -435.17 -2.12 -21.30 16 17 C 0.11 2.75 0.75 4.22 0.00 2.75 16 18 C 0.44 12.65 2.76 71.98 0.20 12.85 16 19 F -0.19 -7.02 15.27 44.97 0.69 -6.33 16 20 F -0.19 -5.73 17.05 44.97 0.77 -4.96 16 21 F -0.18 -4.29 15.82 44.97 0.71 -3.58 16 22 C -0.14 -3.33 6.61 31.12 0.21 -3.12 16 23 C -0.12 -1.78 7.98 31.12 0.25 -1.53 16 24 C -0.11 -1.52 7.27 31.21 0.23 -1.29 16 25 H 0.03 1.33 7.84 -2.38 -0.02 1.32 16 26 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.04 1.92 5.65 -2.38 -0.01 1.90 16 28 H 0.07 4.02 5.95 -2.39 -0.01 4.01 16 29 H 0.04 1.79 8.14 -2.39 -0.02 1.78 16 30 H 0.26 14.40 8.31 -92.70 -0.77 13.63 16 31 H 0.40 13.50 8.56 -92.71 -0.79 12.70 16 32 H 0.42 8.23 8.74 -92.71 -0.81 7.42 16 33 H 0.10 2.22 8.06 -2.39 -0.02 2.20 16 34 H 0.06 2.06 6.72 -2.39 -0.02 2.05 16 35 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 36 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.11 1.03 8.12 -2.38 -0.02 1.01 16 38 H 0.12 1.38 7.02 -2.39 -0.02 1.37 16 Total: -1.00 -67.82 315.54 3.10 -64.72 By element: Atomic # 1 Polarization: 24.93 SS G_CDS: -0.49 Total: 24.44 kcal Atomic # 6 Polarization: 11.34 SS G_CDS: 3.63 Total: 14.97 kcal Atomic # 7 Polarization: -100.61 SS G_CDS: -4.20 Total: -104.81 kcal Atomic # 8 Polarization: -28.12 SS G_CDS: -0.04 Total: -28.16 kcal Atomic # 9 Polarization: -17.04 SS G_CDS: 2.16 Total: -14.88 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.71 kcal Total: -67.82 3.10 -64.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619569546.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.290 kcal (2) G-P(sol) polarization free energy of solvation -67.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds