Wall clock time and date at job start Tue Mar 31 2020 07:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35994 * 117.00493 * 2 1 4 4 C 1.38126 * 119.95656 * 359.97438 * 3 2 1 5 5 C 1.40003 * 119.91659 * 180.02562 * 4 3 2 6 6 C 1.46866 * 120.08415 * 179.72841 * 5 4 3 7 7 C 1.50698 * 120.00404 * 174.46574 * 6 5 4 8 8 O 1.21293 * 119.99634 * 354.46380 * 6 5 4 9 9 C 1.40011 * 119.83740 * 359.97438 * 5 4 3 10 10 C 1.38115 * 119.91538 * 0.03127 * 9 5 4 11 11 O 1.36009 * 119.96043 * 180.02562 * 10 9 5 12 12 C 1.42908 * 116.99526 * 359.94935 * 11 10 9 13 13 C 1.39318 * 119.96140 * 180.02562 * 3 2 1 14 14 O 1.35834 * 119.91949 * 359.97359 * 13 3 2 15 15 C 1.42901 * 117.00415 * 89.99817 * 14 13 3 16 16 C 1.52999 * 109.47483 * 180.02562 * 15 14 13 17 17 C 1.50700 * 109.46909 * 180.02562 * 16 15 14 18 18 H 1.08001 * 120.00201 * 359.97438 * 17 16 15 19 19 C 1.37883 * 119.99676 * 179.97438 * 17 16 15 20 20 N 1.31514 * 119.99702 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 119.99899 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47083 * 89.99816 * 21 19 17 23 23 H 1.48497 * 109.46979 * 209.99760 * 21 19 17 24 24 H 1.48494 * 109.47145 * 329.99801 * 21 19 17 25 25 H 1.09004 * 109.47200 * 60.00384 * 1 2 3 26 26 H 1.09003 * 109.47775 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47620 * 300.00631 * 1 2 3 28 28 H 1.07994 * 120.04102 * 0.02562 * 4 3 2 29 29 H 1.09004 * 109.46903 * 5.07315 * 7 6 5 30 30 H 1.08999 * 109.47249 * 125.07220 * 7 6 5 31 31 H 1.09003 * 109.46998 * 245.07626 * 7 6 5 32 32 H 1.08006 * 120.04353 * 179.97438 * 9 5 4 33 33 H 1.09000 * 109.46582 * 180.02562 * 12 11 10 34 34 H 1.09000 * 109.46846 * 299.99984 * 12 11 10 35 35 H 1.08994 * 109.47004 * 60.00121 * 12 11 10 36 36 H 1.09000 * 109.47186 * 300.00355 * 15 14 13 37 37 H 1.09001 * 109.47024 * 60.00131 * 15 14 13 38 38 H 1.09000 * 109.46888 * 300.00157 * 16 15 14 39 39 H 1.09001 * 109.47194 * 59.99854 * 16 15 14 40 40 H 0.97002 * 119.99757 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2934 2.3696 -0.0005 5 6 1.9300 3.6165 -0.0011 6 6 1.1329 4.8500 -0.0077 7 6 1.8143 6.1883 0.1176 8 8 -0.0740 4.7916 -0.1140 9 6 3.3284 3.6847 -0.0005 10 6 4.0747 2.5226 -0.0001 11 8 5.4332 2.5878 0.0009 12 6 6.0201 3.8908 0.0004 13 6 3.4378 1.2835 -0.0005 14 8 4.1751 0.1427 -0.0005 15 6 4.5268 -0.4026 -1.2737 16 6 5.3497 -1.6767 -1.0732 17 6 5.7210 -2.2513 -2.4160 18 1 5.4017 -1.7574 -3.3218 19 6 6.4685 -3.4077 -2.4881 20 7 6.7922 -3.9094 -3.6599 21 14 7.0202 -4.2624 -0.9214 22 1 5.9906 -5.2489 -0.5068 23 1 8.3066 -4.9628 -1.1663 24 1 7.2021 -3.2550 0.1543 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3635 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 0.2149 2.3131 -0.0005 29 1 2.8952 6.0475 0.1118 30 1 1.5260 6.8227 -0.7205 31 1 1.5146 6.6625 1.0522 32 1 3.8230 4.6449 -0.0014 33 1 7.1064 3.7999 0.0009 34 1 5.7016 4.4324 -0.8902 35 1 5.7002 4.4337 0.8897 36 1 3.6202 -0.6398 -1.8304 37 1 5.1151 0.3263 -1.8312 38 1 6.2563 -1.4398 -0.5164 39 1 4.7611 -2.4055 -0.5159 40 1 7.3184 -4.7227 -3.7106 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000647164111.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:39 Heat of formation + Delta-G solvation = -119.727576 kcal Electronic energy + Delta-G solvation = -23627.479229 eV Core-core repulsion = 19988.268256 eV Total energy + Delta-G solvation = -3639.210973 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.95422 -39.41010 -39.05422 -37.57829 -36.11859 -33.26103 -31.71775 -30.65502 -29.77360 -29.06824 -27.85102 -26.82674 -25.06516 -23.36309 -21.99084 -20.64359 -20.42277 -18.55770 -17.42679 -17.25908 -16.64958 -16.46562 -16.09870 -15.97656 -15.56399 -15.18800 -15.00454 -14.83752 -14.51636 -14.29075 -14.03989 -13.34233 -13.22496 -12.78830 -12.70973 -12.49022 -12.23320 -12.15230 -11.74401 -11.61822 -11.59997 -11.27627 -11.15851 -10.79259 -10.45430 -10.13236 -9.98319 -9.82138 -9.25763 -9.19066 -8.53229 -8.35839 -8.20997 -6.05303 -4.04692 0.35474 1.23025 2.13077 2.77273 3.35232 3.41436 3.42911 3.49299 3.56690 3.72806 4.12733 4.47275 4.59113 4.65445 4.79170 4.91343 4.94532 5.01794 5.04367 5.05970 5.11289 5.21601 5.29467 5.31727 5.37722 5.44774 5.51132 5.74411 5.94361 6.02284 6.13909 6.19715 6.22084 6.65169 7.02043 7.16608 7.26146 7.28518 7.40824 7.73665 8.08348 8.49192 8.96486 9.55894 11.07492 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.019500 B = 0.003978 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.584898 B = 7037.557540 C = 7973.095541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.294 6.294 3 C 0.130 3.870 4 C -0.173 4.173 5 C -0.116 4.116 6 C 0.400 3.600 7 C -0.201 4.201 8 O -0.459 6.459 9 C -0.188 4.188 10 C 0.130 3.870 11 O -0.293 6.293 12 C 0.023 3.977 13 C 0.085 3.915 14 O -0.321 6.321 15 C 0.085 3.915 16 C -0.007 4.007 17 C -0.521 4.521 18 H 0.073 0.927 19 C 0.071 3.929 20 N -0.901 5.901 21 Si 0.880 3.120 22 H -0.275 1.275 23 H -0.287 1.287 24 H -0.262 1.262 25 H 0.057 0.943 26 H 0.104 0.896 27 H 0.055 0.945 28 H 0.143 0.857 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.144 0.856 33 H 0.104 0.896 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.027 0.973 39 H 0.022 0.978 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.195 19.962 9.352 23.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.206 6.206 3 C 0.083 3.917 4 C -0.192 4.192 5 C -0.117 4.117 6 C 0.278 3.722 7 C -0.258 4.258 8 O -0.335 6.335 9 C -0.207 4.207 10 C 0.083 3.917 11 O -0.206 6.206 12 C -0.072 4.072 13 C 0.038 3.962 14 O -0.238 6.238 15 C 0.012 3.988 16 C -0.044 4.044 17 C -0.559 4.559 18 H 0.091 0.909 19 C -0.131 4.131 20 N -0.540 5.540 21 Si 0.707 3.293 22 H -0.201 1.201 23 H -0.213 1.213 24 H -0.187 1.187 25 H 0.075 0.925 26 H 0.123 0.877 27 H 0.074 0.926 28 H 0.161 0.839 29 H 0.102 0.898 30 H 0.113 0.887 31 H 0.115 0.885 32 H 0.161 0.839 33 H 0.122 0.878 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.045 0.955 39 H 0.041 0.959 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.424 19.314 9.346 23.435 hybrid contribution 0.124 -0.057 0.469 0.488 sum -9.300 19.257 9.815 23.530 Atomic orbital electron populations 1.23157 0.78238 1.04402 1.01326 1.86270 1.21223 1.25130 1.87970 1.18949 0.90864 0.85129 0.96765 1.21261 1.00719 0.90560 1.06684 1.19945 0.93350 0.94254 1.04179 1.22373 0.88379 0.90485 0.70922 1.22233 1.02689 0.95883 1.04950 1.90539 1.16622 1.89872 1.36497 1.21320 0.93248 0.97592 1.08574 1.18914 0.83480 0.92458 0.96856 1.86296 1.15804 1.30413 1.88047 1.23155 0.99627 0.83331 1.01070 1.17488 0.86754 0.86003 1.05925 1.86097 1.69560 1.36088 1.32020 1.22983 0.98204 0.96260 0.81346 1.19546 0.95117 0.91293 0.98459 1.20881 1.34045 1.09484 0.91515 0.90908 1.24929 0.95281 0.96690 0.96176 1.69903 1.38668 1.21744 1.23673 0.86757 0.78216 0.80070 0.84248 1.20118 1.21313 1.18654 0.92467 0.87731 0.92596 0.83915 0.89819 0.88724 0.88530 0.83907 0.87765 0.92552 0.92627 0.93495 0.93454 0.95486 0.95925 0.92590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 101.05 0.99 1.25 16 2 O -0.29 -4.74 10.27 -34.47 -0.35 -5.09 16 3 C 0.13 2.07 6.69 -39.22 -0.26 1.81 16 4 C -0.17 -2.33 8.57 -38.96 -0.33 -2.66 16 5 C -0.12 -1.39 5.87 -105.08 -0.62 -2.01 16 6 C 0.40 4.23 7.20 -30.82 -0.22 4.00 16 7 C -0.20 -1.25 10.19 36.00 0.37 -0.88 16 8 O -0.46 -6.20 17.09 5.55 0.09 -6.11 16 9 C -0.19 -2.14 8.42 -38.96 -0.33 -2.47 16 10 C 0.13 1.94 6.69 -39.22 -0.26 1.68 16 11 O -0.29 -4.36 10.27 -34.53 -0.35 -4.72 16 12 C 0.02 0.21 9.81 101.05 0.99 1.20 16 13 C 0.08 1.51 5.76 -38.78 -0.22 1.29 16 14 O -0.32 -6.83 9.59 -44.62 -0.43 -7.26 16 15 C 0.09 1.92 6.00 37.16 0.22 2.15 16 16 C -0.01 -0.17 4.41 -27.88 -0.12 -0.30 16 17 C -0.52 -15.27 9.66 -34.44 -0.33 -15.60 16 18 H 0.07 2.26 7.99 -52.49 -0.42 1.84 16 19 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 20 N -0.90 -27.99 13.96 55.43 0.77 -27.21 16 21 Si 0.88 22.22 27.47 -169.99 -4.67 17.55 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.26 -6.46 6.54 56.52 0.37 -6.09 16 25 H 0.06 0.56 7.66 -51.93 -0.40 0.16 16 26 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.06 0.52 7.66 -51.93 -0.40 0.12 16 28 H 0.14 1.73 5.87 -52.49 -0.31 1.43 16 29 H 0.08 0.38 5.61 -51.93 -0.29 0.09 16 30 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.14 1.08 4.15 -52.48 -0.22 0.87 16 33 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.06 0.41 7.66 -51.93 -0.40 0.01 16 35 H 0.06 0.37 7.65 -51.93 -0.40 -0.03 16 36 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.03 0.70 7.20 -51.93 -0.37 0.32 16 39 H 0.02 0.58 7.57 -51.93 -0.39 0.19 16 40 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 340.14 15.07 5.13 5.13 Total: -1.00 -35.53 340.14 -5.34 -40.87 By element: Atomic # 1 Polarization: 0.68 SS G_CDS: -5.30 Total: -4.62 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: -0.23 Total: -8.54 kcal Atomic # 7 Polarization: -27.99 SS G_CDS: 0.77 Total: -27.21 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: -1.04 Total: -23.17 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.67 Total: 17.55 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -35.53 -5.34 -40.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000647164111.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.858 kcal (2) G-P(sol) polarization free energy of solvation -35.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds