Wall clock time and date at job start Tue Mar 31 2020 07:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35994 * 117.00493 * 2 1 4 4 C 1.38126 * 119.95656 * 359.97438 * 3 2 1 5 5 C 1.40003 * 119.91659 * 180.02562 * 4 3 2 6 6 C 1.46866 * 120.08415 * 179.72841 * 5 4 3 7 7 C 1.50698 * 120.00404 * 174.46574 * 6 5 4 8 8 O 1.21293 * 119.99634 * 354.46380 * 6 5 4 9 9 C 1.40011 * 119.83740 * 359.97438 * 5 4 3 10 10 C 1.38115 * 119.91538 * 0.03127 * 9 5 4 11 11 O 1.36009 * 119.96043 * 180.02562 * 10 9 5 12 12 C 1.42908 * 116.99526 * 359.94935 * 11 10 9 13 13 C 1.39318 * 119.96140 * 180.02562 * 3 2 1 14 14 O 1.35834 * 119.91949 * 359.97359 * 13 3 2 15 15 C 1.42901 * 117.00415 * 89.99817 * 14 13 3 16 16 C 1.52999 * 109.47483 * 180.02562 * 15 14 13 17 17 C 1.50700 * 109.46909 * 180.02562 * 16 15 14 18 18 H 1.08001 * 120.00201 * 359.97438 * 17 16 15 19 19 C 1.37883 * 119.99676 * 179.97438 * 17 16 15 20 20 N 1.31514 * 119.99702 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 119.99899 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47083 * 89.99816 * 21 19 17 23 23 H 1.48497 * 109.46979 * 209.99760 * 21 19 17 24 24 H 1.48494 * 109.47145 * 329.99801 * 21 19 17 25 25 H 1.09004 * 109.47200 * 60.00384 * 1 2 3 26 26 H 1.09003 * 109.47775 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47620 * 300.00631 * 1 2 3 28 28 H 1.07994 * 120.04102 * 0.02562 * 4 3 2 29 29 H 1.09004 * 109.46903 * 5.07315 * 7 6 5 30 30 H 1.08999 * 109.47249 * 125.07220 * 7 6 5 31 31 H 1.09003 * 109.46998 * 245.07626 * 7 6 5 32 32 H 1.08006 * 120.04353 * 179.97438 * 9 5 4 33 33 H 1.09000 * 109.46582 * 180.02562 * 12 11 10 34 34 H 1.09000 * 109.46846 * 299.99984 * 12 11 10 35 35 H 1.08994 * 109.47004 * 60.00121 * 12 11 10 36 36 H 1.09000 * 109.47186 * 300.00355 * 15 14 13 37 37 H 1.09001 * 109.47024 * 60.00131 * 15 14 13 38 38 H 1.09000 * 109.46888 * 300.00157 * 16 15 14 39 39 H 1.09001 * 109.47194 * 59.99854 * 16 15 14 40 40 H 0.97002 * 119.99757 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2934 2.3696 -0.0005 5 6 1.9300 3.6165 -0.0011 6 6 1.1329 4.8500 -0.0077 7 6 1.8143 6.1883 0.1176 8 8 -0.0740 4.7916 -0.1140 9 6 3.3284 3.6847 -0.0005 10 6 4.0747 2.5226 -0.0001 11 8 5.4332 2.5878 0.0009 12 6 6.0201 3.8908 0.0004 13 6 3.4378 1.2835 -0.0005 14 8 4.1751 0.1427 -0.0005 15 6 4.5268 -0.4026 -1.2737 16 6 5.3497 -1.6767 -1.0732 17 6 5.7210 -2.2513 -2.4160 18 1 5.4017 -1.7574 -3.3218 19 6 6.4685 -3.4077 -2.4881 20 7 6.7922 -3.9094 -3.6599 21 14 7.0202 -4.2624 -0.9214 22 1 5.9906 -5.2489 -0.5068 23 1 8.3066 -4.9628 -1.1663 24 1 7.2021 -3.2550 0.1543 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3635 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 0.2149 2.3131 -0.0005 29 1 2.8952 6.0475 0.1118 30 1 1.5260 6.8227 -0.7205 31 1 1.5146 6.6625 1.0522 32 1 3.8230 4.6449 -0.0014 33 1 7.1064 3.7999 0.0009 34 1 5.7016 4.4324 -0.8902 35 1 5.7002 4.4337 0.8897 36 1 3.6202 -0.6398 -1.8304 37 1 5.1151 0.3263 -1.8312 38 1 6.2563 -1.4398 -0.5164 39 1 4.7611 -2.4055 -0.5159 40 1 7.3184 -4.7227 -3.7106 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000647164111.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:39 Heat of formation + Delta-G solvation = -143.765577 kcal Electronic energy + Delta-G solvation = -23628.521595 eV Core-core repulsion = 19988.268256 eV Total energy + Delta-G solvation = -3640.253339 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.02705 -40.36434 -40.09739 -38.99486 -37.17530 -35.40147 -33.07646 -32.13567 -30.89066 -29.99118 -28.66905 -27.70610 -26.95669 -24.52643 -22.99530 -22.67341 -21.36178 -19.79296 -19.01604 -18.36351 -18.11908 -17.66183 -17.19561 -16.92677 -16.50852 -16.33463 -16.08629 -15.98439 -15.97069 -15.74186 -15.57268 -14.66765 -14.47054 -14.28021 -13.60198 -13.53742 -13.24062 -13.13288 -12.96028 -12.86860 -12.55983 -12.50736 -12.46103 -12.24515 -12.06519 -11.78458 -11.72308 -11.50082 -10.93780 -10.88492 -10.75386 -9.41867 -9.36361 -8.34523 -6.40756 -0.67381 0.18410 1.18389 1.36026 1.37026 1.51351 1.81346 2.33074 2.34283 2.63155 2.79293 2.97228 3.00230 3.75768 3.78597 3.88613 3.98013 4.14798 4.25499 4.27495 4.29536 4.33521 4.34536 4.45650 4.54469 4.64551 4.67125 4.69830 4.73191 4.82479 4.92586 5.01818 5.10456 5.19906 5.23079 5.35337 5.52336 6.02506 6.17935 6.23843 6.41715 6.63475 6.65074 7.24083 8.81537 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.019500 B = 0.003978 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.584898 B = 7037.557540 C = 7973.095541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.327 6.327 3 C 0.124 3.876 4 C -0.182 4.182 5 C -0.110 4.110 6 C 0.403 3.597 7 C -0.195 4.195 8 O -0.492 6.492 9 C -0.169 4.169 10 C 0.130 3.870 11 O -0.327 6.327 12 C 0.008 3.992 13 C 0.027 3.973 14 O -0.335 6.335 15 C 0.101 3.899 16 C 0.000 4.000 17 C -0.535 4.535 18 H 0.037 0.963 19 C 0.015 3.985 20 N -0.943 5.943 21 Si 0.950 3.050 22 H -0.265 1.265 23 H -0.275 1.275 24 H -0.252 1.252 25 H 0.065 0.935 26 H 0.119 0.881 27 H 0.072 0.928 28 H 0.152 0.848 29 H 0.106 0.894 30 H 0.109 0.891 31 H 0.115 0.885 32 H 0.189 0.811 33 H 0.113 0.887 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.037 0.963 37 H 0.042 0.958 38 H 0.026 0.974 39 H 0.022 0.978 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.202 22.561 11.117 26.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.241 6.241 3 C 0.077 3.923 4 C -0.201 4.201 5 C -0.112 4.112 6 C 0.284 3.716 7 C -0.251 4.251 8 O -0.370 6.370 9 C -0.187 4.187 10 C 0.083 3.917 11 O -0.241 6.241 12 C -0.085 4.085 13 C -0.019 4.019 14 O -0.252 6.252 15 C 0.027 3.973 16 C -0.038 4.038 17 C -0.573 4.573 18 H 0.056 0.944 19 C -0.183 4.183 20 N -0.583 5.583 21 Si 0.772 3.228 22 H -0.190 1.190 23 H -0.200 1.200 24 H -0.176 1.176 25 H 0.084 0.916 26 H 0.137 0.863 27 H 0.090 0.910 28 H 0.170 0.830 29 H 0.124 0.876 30 H 0.127 0.873 31 H 0.133 0.867 32 H 0.206 0.794 33 H 0.132 0.868 34 H 0.095 0.905 35 H 0.102 0.898 36 H 0.055 0.945 37 H 0.061 0.939 38 H 0.045 0.955 39 H 0.041 0.959 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.436 21.943 11.117 26.346 hybrid contribution 0.049 -0.699 -0.134 0.714 sum -9.387 21.244 10.983 25.691 Atomic orbital electron populations 1.23438 0.75963 1.05857 1.02516 1.86210 1.23769 1.25979 1.88105 1.19068 0.90594 0.85822 0.96812 1.21417 1.01145 0.90533 1.06988 1.20402 0.94064 0.94658 1.02042 1.22928 0.87805 0.91464 0.69418 1.22301 1.03514 0.92872 1.06406 1.90544 1.18109 1.90290 1.38046 1.21670 0.92674 0.98163 1.06215 1.19020 0.84053 0.92426 0.96232 1.86255 1.15785 1.34099 1.87915 1.23575 1.00101 0.81465 1.03379 1.17992 0.87503 0.85902 1.10497 1.86038 1.70508 1.38138 1.30550 1.22514 0.97154 0.95056 0.82593 1.19375 0.95491 0.92656 0.96249 1.21104 1.34332 1.09886 0.92004 0.94439 1.25867 0.95155 0.97355 0.99917 1.70028 1.39537 1.22543 1.26148 0.85667 0.78313 0.79081 0.79715 1.18967 1.20028 1.17611 0.91605 0.86253 0.90986 0.82997 0.87559 0.87296 0.86720 0.79439 0.86836 0.90499 0.89833 0.94488 0.93938 0.95539 0.95945 0.92048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.81 113.37 1.11 1.46 16 2 O -0.33 -10.94 10.27 -79.38 -0.82 -11.76 16 3 C 0.12 4.04 6.69 22.50 0.15 4.19 16 4 C -0.18 -4.78 8.57 22.67 0.19 -4.59 16 5 C -0.11 -2.40 5.87 -20.16 -0.12 -2.52 16 6 C 0.40 7.27 7.20 27.95 0.20 7.47 16 7 C -0.19 -1.47 10.19 71.24 0.73 -0.74 16 8 O -0.49 -12.28 17.09 -3.07 -0.05 -12.33 16 9 C -0.17 -3.33 8.42 22.67 0.19 -3.14 16 10 C 0.13 3.76 6.69 22.50 0.15 3.91 16 11 O -0.33 -9.40 10.27 -79.54 -0.82 -10.22 16 12 C 0.01 0.12 9.81 113.37 1.11 1.24 16 13 C 0.03 0.97 5.76 22.79 0.13 1.10 16 14 O -0.34 -14.81 9.59 -67.39 -0.65 -15.46 16 15 C 0.10 4.76 6.00 71.98 0.43 5.20 16 16 C 0.00 -0.01 4.41 29.85 0.13 0.12 16 17 C -0.54 -32.52 9.66 25.60 0.25 -32.27 16 18 H 0.04 2.46 7.99 -2.91 -0.02 2.44 16 19 C 0.02 0.91 5.47 84.66 0.46 1.37 16 20 N -0.94 -59.85 13.96 21.45 0.30 -59.55 16 21 Si 0.95 45.99 27.47 68.60 1.88 47.88 16 22 H -0.26 -12.32 7.11 99.48 0.71 -11.61 16 23 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 24 H -0.25 -11.75 6.54 99.48 0.65 -11.10 16 25 H 0.07 1.28 7.66 -2.38 -0.02 1.27 16 26 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 27 H 0.07 1.30 7.66 -2.39 -0.02 1.28 16 28 H 0.15 3.60 5.87 -2.91 -0.02 3.58 16 29 H 0.11 0.30 5.61 -2.38 -0.01 0.29 16 30 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.19 1.84 4.15 -2.91 -0.01 1.83 16 33 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.08 0.81 7.66 -2.39 -0.02 0.79 16 35 H 0.08 0.76 7.65 -2.39 -0.02 0.74 16 36 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.03 1.38 7.20 -2.39 -0.02 1.36 16 39 H 0.02 1.17 7.57 -2.39 -0.02 1.15 16 40 H 0.27 15.87 8.31 -92.71 -0.77 15.09 16 Total: -1.00 -81.10 340.14 5.98 -75.12 By element: Atomic # 1 Polarization: 2.53 SS G_CDS: 1.00 Total: 3.53 kcal Atomic # 6 Polarization: -22.33 SS G_CDS: 5.12 Total: -17.21 kcal Atomic # 7 Polarization: -59.85 SS G_CDS: 0.30 Total: -59.55 kcal Atomic # 8 Polarization: -47.44 SS G_CDS: -2.33 Total: -49.78 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 1.88 Total: 47.88 kcal Total: -81.10 5.98 -75.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000647164111.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.643 kcal (2) G-P(sol) polarization free energy of solvation -81.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds