Wall clock time and date at job start Tue Mar 31 2020 07:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00084 * 2 1 4 4 C 1.53006 * 109.47006 * 66.04673 * 3 2 1 5 5 C 1.50698 * 109.47184 * 179.97438 * 4 3 2 6 6 H 1.08005 * 119.99819 * 0.02562 * 5 4 3 7 7 C 1.37875 * 120.00046 * 179.97438 * 5 4 3 8 8 N 1.31511 * 120.00192 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99979 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47297 * 180.02562 * 9 7 5 11 11 H 1.48503 * 109.47261 * 60.00310 * 9 7 5 12 12 H 1.48500 * 109.47454 * 300.00304 * 9 7 5 13 13 C 1.46901 * 110.99748 * 236.05224 * 2 1 3 14 14 H 1.08994 * 110.43810 * 64.64873 * 13 2 1 15 15 C 1.54635 * 110.48255 * 302.11179 * 13 2 1 16 16 C 1.54486 * 101.76338 * 216.52812 * 15 13 2 17 17 N 1.46764 * 105.47482 * 25.41406 * 16 15 13 18 18 C 1.46496 * 124.35297 * 162.98189 * 17 16 15 19 19 C 1.52999 * 109.47180 * 90.00031 * 18 17 16 20 20 F 1.39894 * 109.47050 * 60.00237 * 19 18 17 21 21 F 1.39898 * 109.47399 * 180.02562 * 19 18 17 22 22 F 1.39902 * 109.47045 * 300.00406 * 19 18 17 23 23 C 1.34658 * 111.33607 * 342.87285 * 17 16 15 24 24 O 1.21278 * 125.07301 * 180.53312 * 23 17 16 25 25 H 1.08997 * 109.47489 * 59.99527 * 1 2 3 26 26 H 1.08993 * 109.47381 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47102 * 299.99662 * 1 2 3 28 28 H 1.09001 * 109.47062 * 306.04927 * 3 2 1 29 29 H 1.09001 * 109.47392 * 186.04375 * 3 2 1 30 30 H 1.08998 * 109.46509 * 60.00221 * 4 3 2 31 31 H 1.08993 * 109.46955 * 299.99780 * 4 3 2 32 32 H 0.97001 * 119.99934 * 359.97438 * 8 7 5 33 33 H 1.08999 * 110.97242 * 334.64149 * 15 13 2 34 34 H 1.08998 * 110.97017 * 98.37379 * 15 13 2 35 35 H 1.08992 * 110.24521 * 144.41681 * 16 15 13 36 36 H 1.09005 * 110.24116 * 266.41857 * 16 15 13 37 37 H 1.08997 * 109.47382 * 210.00580 * 18 17 16 38 38 H 1.09003 * 109.46995 * 330.00550 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0574 1.3183 5 6 2.1721 3.4641 1.3186 6 1 2.7201 3.8322 0.4638 7 6 1.9662 4.2815 2.4097 8 7 1.2985 3.8335 3.4503 9 14 2.6357 6.0254 2.4097 10 1 2.2825 6.6912 3.6893 11 1 2.0443 6.7827 1.2775 12 1 4.1129 5.9886 2.2627 13 6 1.9954 -0.7659 -1.1377 14 1 1.7235 -0.2862 -2.0779 15 6 1.4704 -2.2199 -1.1005 16 6 2.6943 -3.0099 -1.6147 17 7 3.8601 -2.1774 -1.2954 18 6 5.2416 -2.6642 -1.2704 19 6 5.8657 -2.4990 -2.6575 20 9 5.8542 -1.1468 -3.0159 21 9 7.1848 -2.9643 -2.6338 22 9 5.1286 -3.2352 -3.5913 23 6 3.4977 -0.9079 -1.0306 24 8 4.2618 -0.0098 -0.7470 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.5611 1.9273 -0.8309 29 1 3.0798 1.3444 -0.1082 30 1 2.0659 1.5014 2.1491 31 1 0.5473 2.0845 1.4265 32 1 0.9505 2.9281 3.4502 33 1 1.2142 -2.5162 -0.0833 34 1 0.6172 -2.3438 -1.7674 35 1 2.7652 -3.9701 -1.1038 36 1 2.6212 -3.1594 -2.6919 37 1 5.8158 -2.0907 -0.5429 38 1 5.2505 -3.7178 -0.9912 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000732811878.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:56:45 Heat of formation + Delta-G solvation = -179.061881 kcal Electronic energy + Delta-G solvation = -24709.544565 eV Core-core repulsion = 20558.196675 eV Total energy + Delta-G solvation = -4151.347891 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.28945 -47.84865 -47.73541 -40.73861 -36.92943 -36.60104 -33.63248 -32.50369 -29.47395 -28.35734 -27.59331 -25.42084 -23.90495 -23.19438 -21.35223 -20.48167 -19.71747 -18.75537 -18.65145 -17.93958 -17.00757 -16.74886 -16.34216 -15.46139 -14.76193 -14.69919 -14.62173 -14.44566 -14.22210 -13.93648 -13.91012 -13.83650 -13.78626 -13.59932 -13.18633 -12.88737 -12.83217 -12.55912 -12.29531 -12.14195 -11.95996 -11.39536 -11.32432 -11.07192 -10.75616 -10.12710 -10.08190 -9.81534 -9.30713 -9.09013 -8.47813 -8.21934 -7.94921 -6.27314 -3.94395 2.23327 2.35118 2.75906 3.50180 3.53391 3.55473 3.70396 3.71405 4.00726 4.16630 4.19360 4.36835 4.64176 4.67681 4.80641 4.91353 4.95858 5.14673 5.28402 5.50566 5.55642 5.60026 5.78129 5.83582 6.00311 6.20549 6.34994 6.51040 6.67379 7.04486 7.24776 7.34276 7.67745 7.76061 8.07036 8.35073 8.57191 8.98860 9.76929 11.13959 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.020639 B = 0.003949 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.344963 B = 7089.547159 C = 8091.739396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.525 5.525 3 C 0.045 3.955 4 C 0.020 3.980 5 C -0.598 4.598 6 H 0.047 0.953 7 C 0.015 3.985 8 N -0.915 5.915 9 Si 1.069 2.931 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.288 1.288 13 C 0.051 3.949 14 H 0.077 0.923 15 C -0.125 4.125 16 C 0.106 3.894 17 N -0.626 5.626 18 C 0.090 3.910 19 C 0.431 3.569 20 F -0.174 7.174 21 F -0.183 7.183 22 F -0.185 7.185 23 C 0.532 3.468 24 O -0.485 6.485 25 H 0.022 0.978 26 H 0.061 0.939 27 H 0.080 0.920 28 H 0.019 0.981 29 H 0.100 0.900 30 H 0.013 0.987 31 H 0.005 0.995 32 H 0.268 0.732 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.128 0.872 38 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.299 -19.941 -12.865 23.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.251 5.251 3 C -0.080 4.080 4 C -0.017 4.017 5 C -0.637 4.637 6 H 0.066 0.934 7 C -0.188 4.188 8 N -0.552 5.552 9 Si 0.897 3.103 10 H -0.208 1.208 11 H -0.215 1.215 12 H -0.214 1.214 13 C -0.061 4.061 14 H 0.094 0.906 15 C -0.163 4.163 16 C -0.017 4.017 17 N -0.362 5.362 18 C -0.035 4.035 19 C 0.375 3.625 20 F -0.155 7.155 21 F -0.164 7.164 22 F -0.167 7.167 23 C 0.319 3.681 24 O -0.356 6.356 25 H 0.040 0.960 26 H 0.079 0.921 27 H 0.099 0.901 28 H 0.037 0.963 29 H 0.118 0.882 30 H 0.032 0.968 31 H 0.023 0.977 32 H 0.079 0.921 33 H 0.116 0.884 34 H 0.109 0.891 35 H 0.103 0.897 36 H 0.093 0.907 37 H 0.146 0.854 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 4.040 -18.270 -11.392 21.906 hybrid contribution -0.223 -1.093 -2.079 2.359 sum 3.817 -19.363 -13.470 23.895 Atomic orbital electron populations 1.22429 0.87268 1.00913 1.01675 1.62225 1.07803 1.17098 1.37945 1.22706 1.02104 0.83643 0.99592 1.19168 0.95662 0.95113 0.91778 1.22011 1.38551 0.98195 1.04901 0.93449 1.25807 0.95536 1.05041 0.92442 1.70772 1.34404 1.19461 1.30542 0.83554 0.76050 0.74826 0.75859 1.20812 1.21549 1.21433 1.22233 0.91977 0.95908 0.95986 0.90582 1.22746 0.96840 0.92838 1.03834 1.22202 0.83981 0.94614 1.00902 1.48105 1.05139 1.11608 1.71386 1.22436 0.84311 1.04893 0.91883 1.21418 0.76604 0.74350 0.90174 1.93258 1.96168 1.32866 1.93212 1.93190 1.37649 1.88697 1.96873 1.93168 1.76946 1.77348 1.69211 1.20932 0.91183 0.81230 0.74745 1.90730 1.58356 1.41716 1.44783 0.95970 0.92055 0.90146 0.96284 0.88231 0.96829 0.97711 0.92147 0.88441 0.89110 0.89742 0.90678 0.85372 0.85753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.09 60.07 0.55 0.93 16 2 N -0.53 -9.45 4.61 -234.90 -1.08 -10.54 16 3 C 0.05 1.04 4.76 -3.82 -0.02 1.02 16 4 C 0.02 0.55 4.21 -27.88 -0.12 0.43 16 5 C -0.60 -18.01 9.11 -34.44 -0.31 -18.33 16 6 H 0.05 1.42 7.74 -52.48 -0.41 1.02 16 7 C 0.02 0.45 5.46 -17.82 -0.10 0.36 16 8 N -0.92 -28.96 13.65 55.43 0.76 -28.20 16 9 Si 1.07 26.44 29.90 -169.99 -5.08 21.35 16 10 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 13 C 0.05 0.73 2.65 -67.72 -0.18 0.55 16 14 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 15 C -0.12 -1.13 5.45 -25.09 -0.14 -1.26 16 16 C 0.11 0.81 7.22 -3.12 -0.02 0.78 16 17 N -0.63 -6.98 2.81 -172.35 -0.48 -7.46 16 18 C 0.09 0.81 5.91 -4.04 -0.02 0.79 16 19 C 0.43 4.52 3.29 37.16 0.12 4.64 16 20 F -0.17 -2.43 16.95 2.25 0.04 -2.40 16 21 F -0.18 -1.87 17.32 2.25 0.04 -1.83 16 22 F -0.19 -1.87 17.09 2.25 0.04 -1.83 16 23 C 0.53 8.39 7.30 -10.75 -0.08 8.31 16 24 O -0.49 -9.86 14.71 5.56 0.08 -9.78 16 25 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.06 0.73 6.72 -51.93 -0.35 0.38 16 27 H 0.08 1.41 6.47 -51.93 -0.34 1.08 16 28 H 0.02 0.44 8.12 -51.93 -0.42 0.01 16 29 H 0.10 2.47 5.00 -51.93 -0.26 2.21 16 30 H 0.01 0.39 8.01 -51.93 -0.42 -0.02 16 31 H 0.00 0.13 6.42 -51.93 -0.33 -0.20 16 32 H 0.27 8.46 7.22 -40.82 -0.29 8.16 16 33 H 0.10 0.92 7.75 -51.93 -0.40 0.51 16 34 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.49 8.12 -51.93 -0.42 0.07 16 37 H 0.13 1.24 7.94 -51.93 -0.41 0.83 16 38 H 0.12 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 323.03 15.07 4.87 4.87 Total: -1.00 -35.85 323.03 -6.11 -41.96 By element: Atomic # 1 Polarization: 0.59 SS G_CDS: -4.96 Total: -4.38 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: -0.32 Total: -1.77 kcal Atomic # 7 Polarization: -45.39 SS G_CDS: -0.81 Total: -46.20 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.08 Total: -9.78 kcal Atomic # 9 Polarization: -6.17 SS G_CDS: 0.12 Total: -6.06 kcal Atomic # 14 Polarization: 26.44 SS G_CDS: -5.08 Total: 21.35 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -35.85 -6.11 -41.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732811878.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.099 kcal (2) G-P(sol) polarization free energy of solvation -35.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds