Wall clock time and date at job start Tue Mar 31 2020 07:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00084 * 2 1 4 4 C 1.53006 * 109.47006 * 66.04673 * 3 2 1 5 5 C 1.50698 * 109.47184 * 179.97438 * 4 3 2 6 6 H 1.08005 * 119.99819 * 0.02562 * 5 4 3 7 7 C 1.37875 * 120.00046 * 179.97438 * 5 4 3 8 8 N 1.31511 * 120.00192 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99979 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47297 * 180.02562 * 9 7 5 11 11 H 1.48503 * 109.47261 * 60.00310 * 9 7 5 12 12 H 1.48500 * 109.47454 * 300.00304 * 9 7 5 13 13 C 1.46901 * 110.99748 * 236.05224 * 2 1 3 14 14 H 1.08994 * 110.43810 * 64.64873 * 13 2 1 15 15 C 1.54635 * 110.48255 * 302.11179 * 13 2 1 16 16 C 1.54486 * 101.76338 * 216.52812 * 15 13 2 17 17 N 1.46764 * 105.47482 * 25.41406 * 16 15 13 18 18 C 1.46496 * 124.35297 * 162.98189 * 17 16 15 19 19 C 1.52999 * 109.47180 * 90.00031 * 18 17 16 20 20 F 1.39894 * 109.47050 * 60.00237 * 19 18 17 21 21 F 1.39898 * 109.47399 * 180.02562 * 19 18 17 22 22 F 1.39902 * 109.47045 * 300.00406 * 19 18 17 23 23 C 1.34658 * 111.33607 * 342.87285 * 17 16 15 24 24 O 1.21278 * 125.07301 * 180.53312 * 23 17 16 25 25 H 1.08997 * 109.47489 * 59.99527 * 1 2 3 26 26 H 1.08993 * 109.47381 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47102 * 299.99662 * 1 2 3 28 28 H 1.09001 * 109.47062 * 306.04927 * 3 2 1 29 29 H 1.09001 * 109.47392 * 186.04375 * 3 2 1 30 30 H 1.08998 * 109.46509 * 60.00221 * 4 3 2 31 31 H 1.08993 * 109.46955 * 299.99780 * 4 3 2 32 32 H 0.97001 * 119.99934 * 359.97438 * 8 7 5 33 33 H 1.08999 * 110.97242 * 334.64149 * 15 13 2 34 34 H 1.08998 * 110.97017 * 98.37379 * 15 13 2 35 35 H 1.08992 * 110.24521 * 144.41681 * 16 15 13 36 36 H 1.09005 * 110.24116 * 266.41857 * 16 15 13 37 37 H 1.08997 * 109.47382 * 210.00580 * 18 17 16 38 38 H 1.09003 * 109.46995 * 330.00550 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0574 1.3183 5 6 2.1721 3.4641 1.3186 6 1 2.7201 3.8322 0.4638 7 6 1.9662 4.2815 2.4097 8 7 1.2985 3.8335 3.4503 9 14 2.6357 6.0254 2.4097 10 1 2.2825 6.6912 3.6893 11 1 2.0443 6.7827 1.2775 12 1 4.1129 5.9886 2.2627 13 6 1.9954 -0.7659 -1.1377 14 1 1.7235 -0.2862 -2.0779 15 6 1.4704 -2.2199 -1.1005 16 6 2.6943 -3.0099 -1.6147 17 7 3.8601 -2.1774 -1.2954 18 6 5.2416 -2.6642 -1.2704 19 6 5.8657 -2.4990 -2.6575 20 9 5.8542 -1.1468 -3.0159 21 9 7.1848 -2.9643 -2.6338 22 9 5.1286 -3.2352 -3.5913 23 6 3.4977 -0.9079 -1.0306 24 8 4.2618 -0.0098 -0.7470 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.5611 1.9273 -0.8309 29 1 3.0798 1.3444 -0.1082 30 1 2.0659 1.5014 2.1491 31 1 0.5473 2.0845 1.4265 32 1 0.9505 2.9281 3.4502 33 1 1.2142 -2.5162 -0.0833 34 1 0.6172 -2.3438 -1.7674 35 1 2.7652 -3.9701 -1.1038 36 1 2.6212 -3.1594 -2.6919 37 1 5.8158 -2.0907 -0.5429 38 1 5.2505 -3.7178 -0.9912 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000732811878.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:56:45 Heat of formation + Delta-G solvation = -204.960640 kcal Electronic energy + Delta-G solvation = -24710.667620 eV Core-core repulsion = 20558.196675 eV Total energy + Delta-G solvation = -4152.470945 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -51.15201 -48.68508 -48.64996 -41.80227 -38.35379 -37.72117 -35.62278 -33.72445 -31.25449 -29.31535 -28.69191 -27.05492 -25.22654 -24.59416 -22.46361 -22.12338 -20.82991 -19.62201 -19.53642 -18.96834 -18.82171 -18.00163 -17.37939 -16.74135 -16.01284 -15.87972 -15.65562 -15.55989 -15.53947 -15.09807 -14.97734 -14.83529 -14.81003 -14.78749 -14.57085 -14.31197 -14.11448 -13.74292 -13.57826 -13.41369 -13.18797 -12.77664 -12.70414 -12.53096 -12.21261 -11.98248 -11.92461 -11.63219 -10.81716 -10.67377 -10.51130 -10.06360 -9.39447 -8.72242 -6.40888 1.20143 1.46222 1.49492 1.58856 1.78920 1.86209 2.53773 2.75560 2.92016 2.97729 3.13645 3.18795 3.24072 3.53763 3.93319 4.03127 4.08415 4.19718 4.23835 4.29961 4.47682 4.59118 4.63760 4.70268 4.87485 4.95534 5.00757 5.11929 5.23545 5.28865 5.46374 5.73753 5.83705 6.08879 6.12242 6.16266 6.56806 6.94207 7.40059 8.69278 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.020639 B = 0.003949 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.344963 B = 7089.547159 C = 8091.739396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.536 5.536 3 C 0.064 3.936 4 C 0.028 3.972 5 C -0.622 4.622 6 H 0.041 0.959 7 C -0.035 4.035 8 N -0.933 5.933 9 Si 1.118 2.882 10 H -0.277 1.277 11 H -0.267 1.267 12 H -0.274 1.274 13 C 0.042 3.958 14 H 0.079 0.921 15 C -0.112 4.112 16 C 0.103 3.897 17 N -0.618 5.618 18 C 0.089 3.911 19 C 0.431 3.569 20 F -0.200 7.200 21 F -0.181 7.181 22 F -0.180 7.180 23 C 0.517 3.483 24 O -0.547 6.547 25 H 0.027 0.973 26 H 0.107 0.893 27 H 0.050 0.950 28 H 0.011 0.989 29 H 0.079 0.921 30 H -0.016 1.016 31 H -0.003 1.003 32 H 0.255 0.745 33 H 0.099 0.901 34 H 0.125 0.875 35 H 0.123 0.877 36 H 0.094 0.906 37 H 0.116 0.884 38 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.804 -22.129 -14.049 26.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.261 5.261 3 C -0.064 4.064 4 C -0.009 4.009 5 C -0.660 4.660 6 H 0.059 0.941 7 C -0.233 4.233 8 N -0.570 5.570 9 Si 0.939 3.061 10 H -0.202 1.202 11 H -0.192 1.192 12 H -0.199 1.199 13 C -0.069 4.069 14 H 0.096 0.904 15 C -0.149 4.149 16 C -0.018 4.018 17 N -0.352 5.352 18 C -0.036 4.036 19 C 0.375 3.625 20 F -0.181 7.181 21 F -0.162 7.162 22 F -0.161 7.161 23 C 0.305 3.695 24 O -0.423 6.423 25 H 0.046 0.954 26 H 0.125 0.875 27 H 0.069 0.931 28 H 0.029 0.971 29 H 0.097 0.903 30 H 0.002 0.998 31 H 0.015 0.985 32 H 0.065 0.935 33 H 0.117 0.883 34 H 0.143 0.857 35 H 0.141 0.859 36 H 0.112 0.888 37 H 0.134 0.866 38 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 3.519 -20.551 -12.611 24.367 hybrid contribution -0.064 -0.546 -1.764 1.848 sum 3.455 -21.097 -14.375 25.762 Atomic orbital electron populations 1.22465 0.85604 1.03509 1.00439 1.62049 1.09324 1.14064 1.40638 1.22222 1.01022 0.86553 0.96554 1.19008 0.94573 0.94179 0.93159 1.22426 1.38755 0.99861 1.05000 0.94060 1.27444 0.94849 1.09222 0.91739 1.70905 1.35731 1.18947 1.31448 0.82940 0.76299 0.70075 0.76828 1.20170 1.19239 1.19936 1.22461 0.91530 0.98613 0.94335 0.90388 1.22830 0.98572 0.88460 1.05065 1.22571 0.81495 0.95103 1.02602 1.48188 1.07028 1.10512 1.69497 1.22708 0.82926 1.07414 0.90545 1.21616 0.76830 0.73207 0.90818 1.93214 1.96304 1.35109 1.93522 1.93192 1.37650 1.88505 1.96896 1.93174 1.76761 1.76974 1.69201 1.21354 0.91662 0.82148 0.74296 1.90689 1.59750 1.43970 1.47864 0.95412 0.87450 0.93146 0.97108 0.90272 0.99797 0.98525 0.93542 0.88265 0.85711 0.85874 0.88756 0.86583 0.80773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 9.09 127.69 1.16 1.98 16 2 N -0.54 -19.35 4.61 -897.08 -4.13 -23.48 16 3 C 0.06 3.06 4.76 86.31 0.41 3.47 16 4 C 0.03 1.61 4.21 29.85 0.13 1.73 16 5 C -0.62 -38.85 9.11 25.60 0.23 -38.62 16 6 H 0.04 2.56 7.74 -2.91 -0.02 2.54 16 7 C -0.04 -2.16 5.46 84.65 0.46 -1.70 16 8 N -0.93 -60.52 13.65 21.45 0.29 -60.22 16 9 Si 1.12 53.40 29.90 68.60 2.05 55.45 16 10 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 11 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 12 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 13 C 0.04 1.15 2.65 44.91 0.12 1.27 16 14 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 15 C -0.11 -1.56 5.45 31.66 0.17 -1.38 16 16 C 0.10 1.09 7.22 86.83 0.63 1.72 16 17 N -0.62 -12.36 2.81 -817.64 -2.30 -14.66 16 18 C 0.09 1.40 5.91 86.38 0.51 1.91 16 19 C 0.43 8.41 3.29 71.98 0.24 8.65 16 20 F -0.20 -5.66 16.95 44.97 0.76 -4.90 16 21 F -0.18 -3.45 17.32 44.97 0.78 -2.67 16 22 F -0.18 -3.16 17.09 44.97 0.77 -2.39 16 23 C 0.52 16.25 7.30 87.86 0.64 16.90 16 24 O -0.55 -23.35 14.71 -3.02 -0.04 -23.39 16 25 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.11 2.20 6.72 -2.39 -0.02 2.18 16 27 H 0.05 1.80 6.47 -2.39 -0.02 1.79 16 28 H 0.01 0.52 8.12 -2.39 -0.02 0.50 16 29 H 0.08 4.18 5.00 -2.39 -0.01 4.16 16 30 H -0.02 -1.02 8.01 -2.39 -0.02 -1.03 16 31 H 0.00 -0.20 6.42 -2.39 -0.02 -0.21 16 32 H 0.26 16.77 7.22 -92.71 -0.67 16.10 16 33 H 0.10 1.43 7.75 -2.39 -0.02 1.41 16 34 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 36 H 0.09 0.74 8.12 -2.38 -0.02 0.72 16 37 H 0.12 2.19 7.94 -2.39 -0.02 2.17 16 38 H 0.17 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -83.80 323.03 4.05 -79.75 By element: Atomic # 1 Polarization: -0.58 SS G_CDS: 1.18 Total: 0.60 kcal Atomic # 6 Polarization: -8.78 SS G_CDS: 4.70 Total: -4.08 kcal Atomic # 7 Polarization: -92.23 SS G_CDS: -6.14 Total: -98.37 kcal Atomic # 8 Polarization: -23.35 SS G_CDS: -0.04 Total: -23.39 kcal Atomic # 9 Polarization: -12.27 SS G_CDS: 2.31 Total: -9.96 kcal Atomic # 14 Polarization: 53.40 SS G_CDS: 2.05 Total: 55.45 kcal Total: -83.80 4.05 -79.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732811878.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.213 kcal (2) G-P(sol) polarization free energy of solvation -83.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds