Wall clock time and date at job start Tue Mar 31 2020 07:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 O 1.42897 * 109.46822 * 2 1 4 4 C 1.42898 * 113.99697 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.47338 * 29.99690 * 4 3 2 6 6 C 1.53003 * 109.47198 * 269.99555 * 4 3 2 7 7 C 1.50703 * 109.47229 * 149.99565 * 4 3 2 8 8 O 1.20823 * 120.00028 * 5.00253 * 7 4 3 9 9 O 1.34229 * 119.99807 * 184.99326 * 7 4 3 10 10 C 1.45203 * 116.99698 * 180.02562 * 9 7 4 11 11 C 1.50698 * 109.47014 * 180.02562 * 10 9 7 12 12 C 1.38312 * 119.92790 * 269.72426 * 11 10 9 13 13 C 1.38101 * 120.06518 * 179.72645 * 12 11 10 14 14 C 1.38879 * 119.92809 * 0.56882 * 13 12 11 15 15 O 1.35758 * 120.06295 * 179.68290 * 14 13 12 16 16 C 1.34832 * 116.99667 * 174.48859 * 15 14 13 17 17 H 1.07994 * 119.99921 * 5.06226 * 16 15 14 18 18 C 1.38649 * 119.99886 * 185.05375 * 16 15 14 19 19 N 1.31559 * 120.00237 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00227 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47043 * 60.00198 * 20 18 16 22 22 H 1.48495 * 109.47161 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.46928 * 300.00532 * 20 18 16 24 24 C 1.38871 * 119.86965 * 359.70859 * 14 13 12 25 25 C 1.38111 * 119.92713 * 359.97438 * 24 14 13 26 26 H 1.09001 * 109.46830 * 299.99848 * 1 2 3 27 27 H 1.08999 * 109.46841 * 60.00291 * 1 2 3 28 28 H 1.08995 * 109.47106 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46830 * 240.00152 * 2 1 3 30 30 H 1.08999 * 109.46841 * 119.99709 * 2 1 3 31 31 H 1.09002 * 109.46564 * 59.99712 * 6 4 3 32 32 H 1.08997 * 109.47086 * 300.00289 * 6 4 3 33 33 H 1.08995 * 109.47678 * 180.02562 * 6 4 3 34 34 H 1.09000 * 109.47089 * 300.00604 * 10 9 7 35 35 H 1.08998 * 109.47230 * 60.00520 * 10 9 7 36 36 H 1.08002 * 119.96518 * 359.97438 * 12 11 10 37 37 H 1.08001 * 120.03331 * 180.27829 * 13 12 11 38 38 H 0.96995 * 120.00136 * 179.97438 * 19 18 16 39 39 H 1.07995 * 120.04408 * 179.97438 * 24 14 13 40 40 H 1.07994 * 119.96382 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8632 0.6017 -0.5147 6 6 3.9399 1.5003 1.4417 7 6 3.8342 2.7265 -0.7111 8 8 2.9888 3.5020 -1.0902 9 8 5.1327 2.9929 -0.9226 10 6 5.4477 4.2311 -1.6125 11 6 6.9421 4.3583 -1.7591 12 6 7.6801 4.9940 -0.7770 13 6 9.0504 5.1072 -0.9057 14 6 9.6858 4.5925 -2.0282 15 8 11.0320 4.7080 -2.1605 16 6 11.5987 4.0882 -3.2153 17 1 10.9781 3.6009 -3.9527 18 6 12.9783 4.0766 -3.3535 19 7 13.7344 4.6700 -2.4551 20 14 13.7635 3.2186 -4.8152 21 1 13.2823 3.8438 -6.0733 22 1 15.2404 3.3485 -4.7307 23 1 13.3920 1.7808 -4.8033 24 6 8.9414 3.9599 -3.0152 25 6 7.5721 3.8441 -2.8776 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.6481 0.5843 1.9556 32 1 3.5076 2.3587 1.9558 33 1 5.0264 1.5868 1.4414 34 1 4.9853 4.2247 -2.5996 35 1 5.0655 5.0747 -1.0378 36 1 7.1846 5.3986 0.0932 37 1 9.6267 5.5997 -0.1364 38 1 14.6995 4.6615 -2.5515 39 1 9.4326 3.5590 -3.8895 40 1 6.9926 3.3519 -3.6446 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733445186.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:48:49 Heat of formation + Delta-G solvation = -138.405657 kcal Electronic energy + Delta-G solvation = -22480.693804 eV Core-core repulsion = 18840.672889 eV Total energy + Delta-G solvation = -3640.020915 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.56565 -39.13964 -38.41768 -36.90778 -35.95756 -32.88893 -32.43484 -30.80010 -30.30825 -30.15090 -26.30962 -25.31669 -24.36300 -23.07338 -22.07751 -21.02188 -20.57539 -18.09832 -17.77960 -17.41981 -17.00905 -16.66242 -16.09956 -15.78873 -14.93586 -14.66300 -14.46065 -14.01677 -13.80805 -13.70399 -13.53631 -13.11605 -13.00696 -12.79149 -12.73180 -12.39433 -12.31581 -12.21599 -11.76407 -11.70498 -11.43751 -11.39315 -11.02381 -10.83789 -10.72571 -10.53053 -10.45206 -10.40129 -9.93268 -9.43372 -8.91821 -8.28551 -7.35054 -6.53744 -4.12525 1.84620 2.13647 2.17194 2.58852 3.08710 3.09837 3.12680 3.62022 3.89892 4.39507 4.53861 4.59601 4.73680 4.76790 4.86897 4.98546 5.01758 5.14279 5.19511 5.20607 5.23890 5.36067 5.44338 5.54672 5.59969 5.63703 5.75481 5.78213 5.83438 6.11367 6.31627 6.49128 6.57991 6.71120 6.79155 6.95140 7.13318 7.25250 7.33895 7.69835 7.80062 7.90844 8.91277 9.58984 10.63554 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.028998 B = 0.002509 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.341802 B =11157.888652 C =11477.858919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.362 6.362 4 C 0.098 3.902 5 H 0.098 0.902 6 C -0.169 4.169 7 C 0.458 3.542 8 O -0.495 6.495 9 O -0.348 6.348 10 C 0.130 3.870 11 C -0.205 4.205 12 C -0.048 4.048 13 C -0.196 4.196 14 C 0.163 3.837 15 O -0.171 6.171 16 C -0.394 4.394 17 H 0.093 0.907 18 C 0.040 3.960 19 N -0.859 5.859 20 Si 0.943 3.057 21 H -0.269 1.269 22 H -0.277 1.277 23 H -0.269 1.269 24 C -0.238 4.238 25 C -0.044 4.044 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.085 0.915 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.113 0.887 37 H 0.120 0.880 38 H 0.272 0.728 39 H 0.130 0.870 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.779 -8.747 4.482 21.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.282 6.282 4 C 0.038 3.962 5 H 0.116 0.884 6 C -0.226 4.226 7 C 0.299 3.701 8 O -0.382 6.382 9 O -0.265 6.265 10 C 0.058 3.942 11 C -0.206 4.206 12 C -0.066 4.066 13 C -0.215 4.215 14 C 0.108 3.892 15 O -0.074 6.074 16 C -0.470 4.470 17 H 0.111 0.889 18 C -0.165 4.165 19 N -0.493 5.493 20 Si 0.767 3.233 21 H -0.194 1.194 22 H -0.202 1.202 23 H -0.194 1.194 24 C -0.257 4.257 25 C -0.063 4.063 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.091 0.909 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.103 0.897 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.131 0.869 37 H 0.138 0.862 38 H 0.082 0.918 39 H 0.147 0.853 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -18.679 -8.153 4.520 20.876 hybrid contribution 0.507 -0.573 -0.864 1.154 sum -18.172 -8.725 3.656 20.487 Atomic orbital electron populations 1.21737 0.93269 1.02330 1.03470 1.22632 0.96003 0.83071 1.00450 1.88018 1.18231 1.26942 1.94973 1.21397 0.83384 0.94413 0.96966 0.88402 1.22214 1.02925 1.03689 0.93816 1.23325 0.81586 0.87846 0.77364 1.90661 1.52011 1.48327 1.47205 1.86628 1.25815 1.43427 1.70658 1.21734 0.93460 0.82907 0.96103 1.18855 0.92410 1.10496 0.98799 1.20515 0.92827 0.96610 0.96690 1.20199 0.93900 1.08813 0.98588 1.19442 0.85109 0.91926 0.92715 1.83980 1.14616 1.63244 1.45523 1.21321 0.90476 1.34173 1.01017 0.88919 1.25328 0.95152 0.97103 0.98884 1.70025 1.05620 1.39883 1.33741 0.85753 0.78238 0.79470 0.79833 1.19410 1.20201 1.19406 1.21138 0.93840 1.08720 1.02021 1.20622 0.93932 0.95735 0.95992 0.91686 0.91633 0.90876 0.92963 0.92851 0.90931 0.91133 0.89661 0.91169 0.91082 0.86851 0.86182 0.91794 0.85262 0.87325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 10.28 37.16 0.38 -0.62 16 2 C 0.05 0.42 6.47 37.16 0.24 0.66 16 3 O -0.36 -4.17 9.53 -55.13 -0.53 -4.70 16 4 C 0.10 1.04 3.24 -27.88 -0.09 0.95 16 5 H 0.10 0.83 7.79 -51.93 -0.40 0.43 16 6 C -0.17 -1.47 9.50 37.16 0.35 -1.12 16 7 C 0.46 6.49 7.29 36.01 0.26 6.75 16 8 O -0.50 -8.49 16.26 -25.46 -0.41 -8.90 16 9 O -0.35 -5.16 10.20 -39.26 -0.40 -5.56 16 10 C 0.13 1.96 5.59 36.00 0.20 2.16 16 11 C -0.20 -3.53 5.52 -104.57 -0.58 -4.11 16 12 C -0.05 -0.85 9.69 -39.60 -0.38 -1.23 16 13 C -0.20 -4.03 9.99 -39.39 -0.39 -4.42 16 14 C 0.16 3.84 6.65 -39.11 -0.26 3.58 16 15 O -0.17 -4.77 9.76 0.02 0.00 -4.77 16 16 C -0.39 -10.73 9.49 30.88 0.29 -10.44 16 17 H 0.09 2.32 5.20 -52.49 -0.27 2.05 16 18 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 19 N -0.86 -24.62 13.67 55.48 0.76 -23.86 16 20 Si 0.94 19.99 29.55 -169.99 -5.02 14.96 16 21 H -0.27 -5.53 7.11 56.52 0.40 -5.12 16 22 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 23 H -0.27 -5.53 7.11 56.52 0.40 -5.12 16 24 C -0.24 -5.03 9.17 -39.39 -0.36 -5.40 16 25 C -0.04 -0.81 9.69 -39.61 -0.38 -1.19 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.05 0.35 8.08 -51.93 -0.42 -0.07 16 30 H 0.05 0.32 7.87 -51.93 -0.41 -0.09 16 31 H 0.07 0.48 7.87 -51.93 -0.41 0.07 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.07 1.01 8.08 -51.93 -0.42 0.59 16 35 H 0.07 1.01 8.08 -51.93 -0.42 0.59 16 36 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 37 H 0.12 2.36 8.06 -52.49 -0.42 1.94 16 38 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 39 H 0.13 2.71 5.64 -52.49 -0.30 2.42 16 40 H 0.11 1.69 8.06 -52.49 -0.42 1.26 16 LS Contribution 350.15 15.07 5.28 5.28 Total: -1.00 -32.05 350.15 -6.71 -38.76 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -5.57 Total: 2.21 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: -0.81 Total: -13.42 kcal Atomic # 7 Polarization: -24.62 SS G_CDS: 0.76 Total: -23.86 kcal Atomic # 8 Polarization: -22.59 SS G_CDS: -1.34 Total: -23.93 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.96 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.05 -6.71 -38.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733445186.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.650 kcal (2) G-P(sol) polarization free energy of solvation -32.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds