Wall clock time and date at job start Tue Mar 31 2020 07:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 O 1.42897 * 109.46822 * 2 1 4 4 C 1.42898 * 113.99697 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.47338 * 29.99690 * 4 3 2 6 6 C 1.53003 * 109.47198 * 269.99555 * 4 3 2 7 7 C 1.50703 * 109.47229 * 149.99565 * 4 3 2 8 8 O 1.20823 * 120.00028 * 5.00253 * 7 4 3 9 9 O 1.34229 * 119.99807 * 184.99326 * 7 4 3 10 10 C 1.45203 * 116.99698 * 180.02562 * 9 7 4 11 11 C 1.50698 * 109.47014 * 180.02562 * 10 9 7 12 12 C 1.38312 * 119.92790 * 269.72426 * 11 10 9 13 13 C 1.38101 * 120.06518 * 179.72645 * 12 11 10 14 14 C 1.38879 * 119.92809 * 0.56882 * 13 12 11 15 15 O 1.35758 * 120.06295 * 179.68290 * 14 13 12 16 16 C 1.34832 * 116.99667 * 174.48859 * 15 14 13 17 17 H 1.07994 * 119.99921 * 5.06226 * 16 15 14 18 18 C 1.38649 * 119.99886 * 185.05375 * 16 15 14 19 19 N 1.31559 * 120.00237 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00227 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47043 * 60.00198 * 20 18 16 22 22 H 1.48495 * 109.47161 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.46928 * 300.00532 * 20 18 16 24 24 C 1.38871 * 119.86965 * 359.70859 * 14 13 12 25 25 C 1.38111 * 119.92713 * 359.97438 * 24 14 13 26 26 H 1.09001 * 109.46830 * 299.99848 * 1 2 3 27 27 H 1.08999 * 109.46841 * 60.00291 * 1 2 3 28 28 H 1.08995 * 109.47106 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46830 * 240.00152 * 2 1 3 30 30 H 1.08999 * 109.46841 * 119.99709 * 2 1 3 31 31 H 1.09002 * 109.46564 * 59.99712 * 6 4 3 32 32 H 1.08997 * 109.47086 * 300.00289 * 6 4 3 33 33 H 1.08995 * 109.47678 * 180.02562 * 6 4 3 34 34 H 1.09000 * 109.47089 * 300.00604 * 10 9 7 35 35 H 1.08998 * 109.47230 * 60.00520 * 10 9 7 36 36 H 1.08002 * 119.96518 * 359.97438 * 12 11 10 37 37 H 1.08001 * 120.03331 * 180.27829 * 13 12 11 38 38 H 0.96995 * 120.00136 * 179.97438 * 19 18 16 39 39 H 1.07995 * 120.04408 * 179.97438 * 24 14 13 40 40 H 1.07994 * 119.96382 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8632 0.6017 -0.5147 6 6 3.9399 1.5003 1.4417 7 6 3.8342 2.7265 -0.7111 8 8 2.9888 3.5020 -1.0902 9 8 5.1327 2.9929 -0.9226 10 6 5.4477 4.2311 -1.6125 11 6 6.9421 4.3583 -1.7591 12 6 7.6801 4.9940 -0.7770 13 6 9.0504 5.1072 -0.9057 14 6 9.6858 4.5925 -2.0282 15 8 11.0320 4.7080 -2.1605 16 6 11.5987 4.0882 -3.2153 17 1 10.9781 3.6009 -3.9527 18 6 12.9783 4.0766 -3.3535 19 7 13.7344 4.6700 -2.4551 20 14 13.7635 3.2186 -4.8152 21 1 13.2823 3.8438 -6.0733 22 1 15.2404 3.3485 -4.7307 23 1 13.3920 1.7808 -4.8033 24 6 8.9414 3.9599 -3.0152 25 6 7.5721 3.8441 -2.8776 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.6481 0.5843 1.9556 32 1 3.5076 2.3587 1.9558 33 1 5.0264 1.5868 1.4414 34 1 4.9853 4.2247 -2.5996 35 1 5.0655 5.0747 -1.0378 36 1 7.1846 5.3986 0.0932 37 1 9.6267 5.5997 -0.1364 38 1 14.6995 4.6615 -2.5515 39 1 9.4326 3.5590 -3.8895 40 1 6.9926 3.3519 -3.6446 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733445186.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:48:48 Heat of formation + Delta-G solvation = -156.950986 kcal Electronic energy + Delta-G solvation = -22481.497990 eV Core-core repulsion = 18840.672889 eV Total energy + Delta-G solvation = -3640.825101 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.69737 -40.79572 -39.30744 -38.44964 -37.26806 -34.37846 -33.58077 -32.11289 -31.83343 -31.05235 -27.89304 -26.83920 -25.44934 -23.69572 -23.67811 -22.31578 -21.87836 -19.90412 -18.95506 -18.78766 -18.21729 -17.72822 -17.12956 -16.58476 -16.39888 -16.31349 -15.98151 -15.56916 -15.30975 -14.76694 -14.66338 -14.42142 -14.23269 -13.94299 -13.76608 -13.51474 -13.38289 -13.20873 -13.02883 -12.88751 -12.61453 -12.45143 -12.33249 -12.27187 -12.15395 -12.06586 -11.71810 -11.40714 -11.21334 -10.81815 -10.68110 -9.84692 -9.06822 -8.48830 -6.17413 0.39584 0.55048 1.08188 1.36149 1.41889 1.51932 1.52817 2.17208 2.72424 2.90584 3.14110 3.45007 3.59849 3.84738 3.86861 3.89417 3.94622 4.13887 4.19430 4.28472 4.31379 4.38320 4.49201 4.54135 4.62011 4.73212 4.76099 4.89313 4.98126 5.02531 5.11587 5.18293 5.21779 5.27846 5.34147 5.50481 5.65271 5.67965 5.99837 6.03890 6.10999 6.69249 6.95417 7.73147 8.73498 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.028998 B = 0.002509 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.341802 B =11157.888652 C =11477.858919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.046 3.954 3 O -0.390 6.390 4 C 0.099 3.901 5 H 0.124 0.876 6 C -0.164 4.164 7 C 0.458 3.542 8 O -0.529 6.529 9 O -0.350 6.350 10 C 0.130 3.870 11 C -0.182 4.182 12 C -0.040 4.040 13 C -0.205 4.205 14 C 0.126 3.874 15 O -0.225 6.225 16 C -0.416 4.416 17 H 0.104 0.896 18 C -0.021 4.021 19 N -0.917 5.917 20 Si 1.019 2.981 21 H -0.257 1.257 22 H -0.272 1.272 23 H -0.257 1.257 24 C -0.245 4.245 25 C -0.043 4.043 26 H 0.059 0.941 27 H 0.051 0.949 28 H 0.096 0.904 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.097 0.903 32 H 0.060 0.940 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.150 0.850 37 H 0.120 0.880 38 H 0.274 0.726 39 H 0.125 0.875 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.295 -10.611 4.311 24.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.029 4.029 3 O -0.310 6.310 4 C 0.040 3.960 5 H 0.141 0.859 6 C -0.221 4.221 7 C 0.301 3.699 8 O -0.418 6.418 9 O -0.267 6.267 10 C 0.057 3.943 11 C -0.182 4.182 12 C -0.058 4.058 13 C -0.224 4.224 14 C 0.075 3.925 15 O -0.131 6.131 16 C -0.492 4.492 17 H 0.122 0.878 18 C -0.219 4.219 19 N -0.555 5.555 20 Si 0.838 3.162 21 H -0.181 1.181 22 H -0.197 1.197 23 H -0.181 1.181 24 C -0.264 4.264 25 C -0.061 4.061 26 H 0.078 0.922 27 H 0.070 0.930 28 H 0.115 0.885 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.115 0.885 32 H 0.079 0.921 33 H 0.104 0.896 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.168 0.832 37 H 0.138 0.862 38 H 0.083 0.917 39 H 0.143 0.857 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -21.262 -10.031 4.362 23.911 hybrid contribution 0.855 0.003 -0.684 1.095 sum -20.407 -10.027 3.678 23.033 Atomic orbital electron populations 1.21778 0.92864 1.03596 1.02565 1.22906 0.96418 0.81673 1.01944 1.87993 1.18557 1.29338 1.95147 1.21567 0.83544 0.93097 0.97781 0.85895 1.22210 1.02780 1.04585 0.92574 1.24110 0.80658 0.88564 0.76522 1.90650 1.52623 1.49719 1.48773 1.86600 1.26608 1.42940 1.70600 1.21691 0.91493 0.83803 0.97296 1.19210 0.93798 1.07633 0.97589 1.20900 0.91498 0.95566 0.97854 1.20449 0.95339 1.08707 0.97930 1.20000 0.84359 0.93589 0.94582 1.83954 1.16710 1.65764 1.46711 1.21813 0.91273 1.34593 1.01500 0.87837 1.26610 0.95429 0.97779 1.02126 1.70171 1.05888 1.42832 1.36595 0.84642 0.77094 0.78579 0.75891 1.18143 1.19697 1.18086 1.21245 0.95169 1.08581 1.01404 1.20959 0.92767 0.95228 0.97101 0.92172 0.92955 0.88528 0.91957 0.90777 0.88470 0.92111 0.89560 0.90036 0.89789 0.83248 0.86205 0.91728 0.85741 0.84085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 10.28 71.99 0.74 -0.95 16 2 C 0.05 0.58 6.47 71.99 0.47 1.04 16 3 O -0.39 -8.09 9.53 -129.95 -1.24 -9.32 16 4 C 0.10 1.82 3.24 29.85 0.10 1.92 16 5 H 0.12 1.63 7.79 -2.39 -0.02 1.61 16 6 C -0.16 -2.36 9.50 71.98 0.68 -1.68 16 7 C 0.46 11.82 7.29 71.24 0.52 12.34 16 8 O -0.53 -17.12 16.26 28.39 0.46 -16.66 16 9 O -0.35 -9.24 10.20 -51.41 -0.52 -9.77 16 10 C 0.13 3.44 5.59 71.24 0.40 3.84 16 11 C -0.18 -5.71 5.52 -19.83 -0.11 -5.82 16 12 C -0.04 -1.32 9.69 22.25 0.22 -1.11 16 13 C -0.21 -8.46 9.99 22.39 0.22 -8.23 16 14 C 0.13 6.11 6.65 22.58 0.15 6.26 16 15 O -0.23 -13.27 9.76 -22.85 -0.22 -13.49 16 16 C -0.42 -23.66 9.49 67.92 0.64 -23.01 16 17 H 0.10 5.36 5.20 -2.91 -0.02 5.34 16 18 C -0.02 -1.19 5.49 84.83 0.47 -0.72 16 19 N -0.92 -55.32 13.67 21.61 0.30 -55.02 16 20 Si 1.02 41.81 29.55 68.60 2.03 43.84 16 21 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 22 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 23 H -0.26 -9.86 7.11 99.48 0.71 -9.16 16 24 C -0.24 -10.34 9.17 22.39 0.21 -10.13 16 25 C -0.04 -1.44 9.69 22.25 0.22 -1.23 16 26 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.06 0.65 8.08 -2.39 -0.02 0.63 16 30 H 0.07 0.62 7.87 -2.39 -0.02 0.60 16 31 H 0.10 0.93 7.87 -2.39 -0.02 0.91 16 32 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.08 2.04 8.08 -2.39 -0.02 2.02 16 35 H 0.08 2.07 8.08 -2.39 -0.02 2.05 16 36 H 0.15 3.85 8.06 -2.91 -0.02 3.82 16 37 H 0.12 4.84 8.06 -2.91 -0.02 4.82 16 38 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 39 H 0.12 5.29 5.64 -2.91 -0.02 5.27 16 40 H 0.14 3.87 8.06 -2.91 -0.02 3.84 16 Total: -1.00 -73.65 350.15 6.75 -66.90 By element: Atomic # 1 Polarization: 19.98 SS G_CDS: 1.04 Total: 21.02 kcal Atomic # 6 Polarization: -32.41 SS G_CDS: 4.92 Total: -27.49 kcal Atomic # 7 Polarization: -55.32 SS G_CDS: 0.30 Total: -55.02 kcal Atomic # 8 Polarization: -47.72 SS G_CDS: -1.52 Total: -49.24 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.84 kcal Total: -73.65 6.75 -66.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733445186.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.049 kcal (2) G-P(sol) polarization free energy of solvation -73.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds