Wall clock time and date at job start Tue Mar 31 2020 07:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42908 * 113.99896 * 2 1 4 4 H 1.09004 * 109.46904 * 30.00364 * 3 2 1 5 5 C 1.52994 * 109.47154 * 270.00360 * 3 2 1 6 6 C 1.52998 * 109.47151 * 150.00313 * 3 2 1 7 7 C 1.50702 * 109.47100 * 295.00191 * 6 3 2 8 8 O 1.20835 * 119.99720 * 0.02562 * 7 6 3 9 9 O 1.34224 * 120.00170 * 179.97438 * 7 6 3 10 10 C 1.45203 * 117.00210 * 179.97438 * 9 7 6 11 11 C 1.50701 * 109.47367 * 180.02562 * 10 9 7 12 12 C 1.38299 * 119.93217 * 269.73145 * 11 10 9 13 13 C 1.38093 * 120.06953 * 179.72477 * 12 11 10 14 14 C 1.38883 * 119.92808 * 0.56550 * 13 12 11 15 15 O 1.35754 * 120.06438 * 179.68623 * 14 13 12 16 16 C 1.34826 * 116.99724 * 174.49160 * 15 14 13 17 17 H 1.07998 * 120.00100 * 5.04739 * 16 15 14 18 18 C 1.38654 * 119.99970 * 185.05457 * 16 15 14 19 19 N 1.31557 * 120.00012 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99959 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46896 * 90.00233 * 20 18 16 22 22 H 1.48505 * 109.47024 * 209.99798 * 20 18 16 23 23 H 1.48496 * 109.47185 * 330.00029 * 20 18 16 24 24 C 1.38871 * 119.86468 * 359.70509 * 14 13 12 25 25 C 1.38101 * 119.93230 * 0.02562 * 24 14 13 26 26 H 1.09003 * 109.46878 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47251 * 299.99434 * 1 2 3 28 28 H 1.08996 * 109.47474 * 60.00196 * 1 2 3 29 29 H 1.09004 * 109.47218 * 299.99812 * 5 3 2 30 30 H 1.09006 * 109.47594 * 60.00110 * 5 3 2 31 31 H 1.08998 * 109.47239 * 179.97438 * 5 3 2 32 32 H 1.08994 * 109.47091 * 175.00080 * 6 3 2 33 33 H 1.09003 * 109.47335 * 54.99701 * 6 3 2 34 34 H 1.09002 * 109.46793 * 60.00090 * 10 9 7 35 35 H 1.09001 * 109.47022 * 300.00654 * 10 9 7 36 36 H 1.08005 * 119.96050 * 359.97425 * 12 11 10 37 37 H 1.07999 * 120.03730 * 180.26989 * 13 12 11 38 38 H 0.97002 * 120.00021 * 179.97438 * 19 18 16 39 39 H 1.08002 * 120.03853 * 179.97438 * 24 14 13 40 40 H 1.07997 * 119.96732 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5139 5 6 2.2175 1.7715 -1.4424 6 6 3.3589 1.2634 0.7212 7 6 3.1416 0.9236 2.1732 8 8 2.0228 0.7342 2.5885 9 8 4.1910 0.8305 3.0050 10 6 3.9070 0.5003 4.3902 11 6 5.1970 0.4406 5.1670 12 6 5.8858 -0.7542 5.2702 13 6 7.0710 -0.8108 5.9766 14 6 7.5651 0.3311 6.5936 15 8 8.7267 0.2771 7.2941 16 6 9.2086 1.4425 7.7710 17 1 8.6341 2.3502 7.6600 18 6 10.4419 1.4756 8.4038 19 7 11.1416 0.3699 8.5394 20 14 11.1098 3.0904 9.0640 21 1 10.6627 3.2740 10.4681 22 1 12.5939 3.0688 9.0160 23 1 10.6039 4.2121 8.2327 24 6 6.8683 1.5281 6.4929 25 6 5.6864 1.5796 5.7804 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 2.8828 1.0776 -1.9564 30 1 1.2566 1.8016 -1.9563 31 1 2.6604 2.7674 -1.4425 32 1 3.8426 2.2370 0.6443 33 1 3.9931 0.5052 0.2617 34 1 3.4085 -0.4678 4.4380 35 1 3.2592 1.2642 4.8203 36 1 5.4983 -1.6430 4.7943 37 1 7.6107 -1.7431 6.0531 38 1 12.0045 0.3931 8.9818 39 1 7.2497 2.4177 6.9720 40 1 5.1438 2.5100 5.7021 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733474604.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:32:52 Heat of formation + Delta-G solvation = -141.375483 kcal Electronic energy + Delta-G solvation = -22472.574576 eV Core-core repulsion = 18832.424880 eV Total energy + Delta-G solvation = -3640.149697 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.46002 -39.10660 -38.39790 -36.90308 -35.91546 -33.23419 -32.43101 -30.62625 -30.23397 -28.61848 -26.83069 -25.97496 -24.81158 -22.35990 -22.04962 -20.69849 -20.50288 -18.07723 -17.61173 -17.25635 -17.14792 -16.52402 -16.09478 -15.39183 -15.09492 -14.66549 -14.57348 -14.28703 -13.73006 -13.62183 -13.53241 -13.14682 -12.92159 -12.78689 -12.65840 -12.40025 -12.36398 -12.08977 -11.72052 -11.70632 -11.38860 -11.06137 -11.02572 -10.80992 -10.69709 -10.49308 -10.39972 -10.33050 -9.87814 -9.40762 -8.90500 -8.26015 -7.32400 -6.52070 -4.10737 1.97077 2.16187 2.29479 2.96923 3.09883 3.11840 3.15410 3.50042 3.91293 4.41093 4.44731 4.69028 4.79071 5.00806 5.07195 5.08139 5.12626 5.17661 5.23676 5.24648 5.26977 5.30541 5.34463 5.52448 5.55984 5.65623 5.68581 5.78535 5.80658 6.13788 6.34229 6.59241 6.61630 6.81772 6.94682 6.97752 7.16107 7.27853 7.36094 7.72500 7.87107 7.92746 8.93165 9.61347 10.65429 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.034847 B = 0.002426 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.330406 B =11540.814369 C =11848.770398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.379 6.379 3 C 0.096 3.904 4 H 0.070 0.930 5 C -0.174 4.174 6 C -0.116 4.116 7 C 0.460 3.540 8 O -0.511 6.511 9 O -0.353 6.353 10 C 0.130 3.870 11 C -0.204 4.204 12 C -0.049 4.049 13 C -0.196 4.196 14 C 0.163 3.837 15 O -0.172 6.172 16 C -0.393 4.393 17 H 0.094 0.906 18 C 0.040 3.960 19 N -0.859 5.859 20 Si 0.943 3.057 21 H -0.272 1.272 22 H -0.277 1.277 23 H -0.267 1.267 24 C -0.238 4.238 25 C -0.045 4.045 26 H 0.083 0.917 27 H 0.046 0.954 28 H 0.036 0.964 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.117 0.883 33 H 0.114 0.886 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.113 0.887 37 H 0.120 0.880 38 H 0.271 0.729 39 H 0.130 0.870 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.133 3.361 -15.496 22.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.297 6.297 3 C 0.038 3.962 4 H 0.088 0.912 5 C -0.232 4.232 6 C -0.154 4.154 7 C 0.303 3.697 8 O -0.400 6.400 9 O -0.269 6.269 10 C 0.058 3.942 11 C -0.205 4.205 12 C -0.067 4.067 13 C -0.215 4.215 14 C 0.108 3.892 15 O -0.075 6.075 16 C -0.469 4.469 17 H 0.111 0.889 18 C -0.165 4.165 19 N -0.493 5.493 20 Si 0.767 3.233 21 H -0.198 1.198 22 H -0.202 1.202 23 H -0.191 1.191 24 C -0.257 4.257 25 C -0.064 4.064 26 H 0.101 0.899 27 H 0.065 0.935 28 H 0.055 0.945 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.135 0.865 33 H 0.132 0.868 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.131 0.869 37 H 0.138 0.862 38 H 0.081 0.919 39 H 0.147 0.853 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -15.946 2.867 -15.147 22.180 hybrid contribution 0.067 1.030 0.442 1.123 sum -15.879 3.897 -14.705 21.990 Atomic orbital electron populations 1.22713 0.80873 1.02596 0.99773 1.87902 1.19954 1.26899 1.94986 1.21876 0.93318 0.85981 0.95049 0.91235 1.22283 1.02794 1.01911 0.96194 1.21585 0.99306 1.05713 0.88756 1.23503 0.83199 0.73656 0.89327 1.90630 1.25293 1.46004 1.78030 1.86650 1.37678 1.80293 1.22324 1.21674 0.95498 1.00630 0.76410 1.18884 0.99468 0.95034 1.07095 1.20516 0.93390 0.96444 0.96353 1.20199 0.98667 0.97714 1.04897 1.19438 0.87137 0.93249 0.89387 1.83979 1.31307 1.33805 1.58373 1.21366 1.02914 0.85521 1.37135 0.88889 1.25328 0.95120 0.99214 0.96835 1.70038 1.12858 1.26871 1.39561 0.85686 0.78380 0.79955 0.79271 1.19805 1.20176 1.19120 1.21137 0.97927 0.99027 1.07614 1.20614 0.94597 0.96327 0.94836 0.89895 0.93547 0.94526 0.91364 0.92005 0.91214 0.86467 0.86826 0.91244 0.91373 0.86872 0.86197 0.91872 0.85278 0.87366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.82 101.05 1.09 1.42 16 2 O -0.38 -4.26 9.58 -49.68 -0.48 -4.74 16 3 C 0.10 0.87 2.27 -26.73 -0.06 0.81 16 4 H 0.07 0.64 7.60 -51.93 -0.39 0.24 16 5 C -0.17 -1.12 9.53 37.15 0.35 -0.76 16 6 C -0.12 -1.08 5.52 -27.88 -0.15 -1.24 16 7 C 0.46 6.19 7.84 36.01 0.28 6.47 16 8 O -0.51 -7.98 15.17 -24.06 -0.37 -8.34 16 9 O -0.35 -5.32 10.20 -39.24 -0.40 -5.72 16 10 C 0.13 1.99 5.59 36.01 0.20 2.19 16 11 C -0.20 -3.60 5.52 -104.57 -0.58 -4.17 16 12 C -0.05 -0.88 9.69 -39.61 -0.38 -1.26 16 13 C -0.20 -4.10 9.99 -39.40 -0.39 -4.50 16 14 C 0.16 3.89 6.65 -39.11 -0.26 3.63 16 15 O -0.17 -4.84 9.76 0.05 0.00 -4.84 16 16 C -0.39 -10.80 9.49 30.89 0.29 -10.51 16 17 H 0.09 2.35 5.20 -52.49 -0.27 2.08 16 18 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 19 N -0.86 -24.81 13.67 55.48 0.76 -24.05 16 20 Si 0.94 20.14 29.55 -169.99 -5.02 15.11 16 21 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 22 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 23 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 24 C -0.24 -5.10 9.17 -39.40 -0.36 -5.46 16 25 C -0.05 -0.84 9.69 -39.61 -0.38 -1.22 16 26 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.43 8.08 -51.93 -0.42 0.01 16 28 H 0.04 0.25 7.87 -51.93 -0.41 -0.16 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.37 7.87 -51.93 -0.41 -0.04 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.12 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.11 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.07 1.02 8.08 -51.93 -0.42 0.60 16 35 H 0.07 0.98 8.08 -51.93 -0.42 0.56 16 36 H 0.11 1.74 8.06 -52.48 -0.42 1.31 16 37 H 0.12 2.41 8.06 -52.49 -0.42 1.98 16 38 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 39 H 0.13 2.75 5.64 -52.49 -0.30 2.45 16 40 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 348.13 15.07 5.25 5.25 Total: -1.00 -32.20 348.13 -6.26 -38.46 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -5.56 Total: 2.50 kcal Atomic # 6 Polarization: -13.18 SS G_CDS: -0.45 Total: -13.63 kcal Atomic # 7 Polarization: -24.81 SS G_CDS: 0.76 Total: -24.05 kcal Atomic # 8 Polarization: -22.40 SS G_CDS: -1.24 Total: -23.64 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.20 -6.26 -38.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733474604.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.915 kcal (2) G-P(sol) polarization free energy of solvation -32.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds