Wall clock time and date at job start Tue Mar 31 2020 07:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42908 * 113.99896 * 2 1 4 4 H 1.09004 * 109.46904 * 30.00364 * 3 2 1 5 5 C 1.52994 * 109.47154 * 270.00360 * 3 2 1 6 6 C 1.52998 * 109.47151 * 150.00313 * 3 2 1 7 7 C 1.50702 * 109.47100 * 295.00191 * 6 3 2 8 8 O 1.20835 * 119.99720 * 0.02562 * 7 6 3 9 9 O 1.34224 * 120.00170 * 179.97438 * 7 6 3 10 10 C 1.45203 * 117.00210 * 179.97438 * 9 7 6 11 11 C 1.50701 * 109.47367 * 180.02562 * 10 9 7 12 12 C 1.38299 * 119.93217 * 269.73145 * 11 10 9 13 13 C 1.38093 * 120.06953 * 179.72477 * 12 11 10 14 14 C 1.38883 * 119.92808 * 0.56550 * 13 12 11 15 15 O 1.35754 * 120.06438 * 179.68623 * 14 13 12 16 16 C 1.34826 * 116.99724 * 174.49160 * 15 14 13 17 17 H 1.07998 * 120.00100 * 5.04739 * 16 15 14 18 18 C 1.38654 * 119.99970 * 185.05457 * 16 15 14 19 19 N 1.31557 * 120.00012 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99959 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46896 * 90.00233 * 20 18 16 22 22 H 1.48505 * 109.47024 * 209.99798 * 20 18 16 23 23 H 1.48496 * 109.47185 * 330.00029 * 20 18 16 24 24 C 1.38871 * 119.86468 * 359.70509 * 14 13 12 25 25 C 1.38101 * 119.93230 * 0.02562 * 24 14 13 26 26 H 1.09003 * 109.46878 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47251 * 299.99434 * 1 2 3 28 28 H 1.08996 * 109.47474 * 60.00196 * 1 2 3 29 29 H 1.09004 * 109.47218 * 299.99812 * 5 3 2 30 30 H 1.09006 * 109.47594 * 60.00110 * 5 3 2 31 31 H 1.08998 * 109.47239 * 179.97438 * 5 3 2 32 32 H 1.08994 * 109.47091 * 175.00080 * 6 3 2 33 33 H 1.09003 * 109.47335 * 54.99701 * 6 3 2 34 34 H 1.09002 * 109.46793 * 60.00090 * 10 9 7 35 35 H 1.09001 * 109.47022 * 300.00654 * 10 9 7 36 36 H 1.08005 * 119.96050 * 359.97425 * 12 11 10 37 37 H 1.07999 * 120.03730 * 180.26989 * 13 12 11 38 38 H 0.97002 * 120.00021 * 179.97438 * 19 18 16 39 39 H 1.08002 * 120.03853 * 179.97438 * 24 14 13 40 40 H 1.07997 * 119.96732 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5139 5 6 2.2175 1.7715 -1.4424 6 6 3.3589 1.2634 0.7212 7 6 3.1416 0.9236 2.1732 8 8 2.0228 0.7342 2.5885 9 8 4.1910 0.8305 3.0050 10 6 3.9070 0.5003 4.3902 11 6 5.1970 0.4406 5.1670 12 6 5.8858 -0.7542 5.2702 13 6 7.0710 -0.8108 5.9766 14 6 7.5651 0.3311 6.5936 15 8 8.7267 0.2771 7.2941 16 6 9.2086 1.4425 7.7710 17 1 8.6341 2.3502 7.6600 18 6 10.4419 1.4756 8.4038 19 7 11.1416 0.3699 8.5394 20 14 11.1098 3.0904 9.0640 21 1 10.6627 3.2740 10.4681 22 1 12.5939 3.0688 9.0160 23 1 10.6039 4.2121 8.2327 24 6 6.8683 1.5281 6.4929 25 6 5.6864 1.5796 5.7804 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 2.8828 1.0776 -1.9564 30 1 1.2566 1.8016 -1.9563 31 1 2.6604 2.7674 -1.4425 32 1 3.8426 2.2370 0.6443 33 1 3.9931 0.5052 0.2617 34 1 3.4085 -0.4678 4.4380 35 1 3.2592 1.2642 4.8203 36 1 5.4983 -1.6430 4.7943 37 1 7.6107 -1.7431 6.0531 38 1 12.0045 0.3931 8.9818 39 1 7.2497 2.4177 6.9720 40 1 5.1438 2.5100 5.7021 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733474604.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:32:51 Heat of formation + Delta-G solvation = -160.348981 kcal Electronic energy + Delta-G solvation = -22473.397329 eV Core-core repulsion = 18832.424880 eV Total energy + Delta-G solvation = -3640.972449 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.56060 -40.78238 -39.24465 -38.45058 -37.19161 -34.37551 -33.94111 -32.13865 -31.83409 -29.39406 -27.77333 -27.46158 -26.37507 -23.69660 -23.23106 -22.17440 -21.48530 -19.90545 -18.92780 -18.65194 -18.02792 -17.69490 -17.18369 -16.41054 -16.30399 -16.09496 -16.04239 -15.57629 -15.50821 -15.09469 -14.68035 -14.39550 -14.05018 -13.98621 -13.60879 -13.53894 -13.42488 -13.10477 -12.97859 -12.91723 -12.61950 -12.43476 -12.34498 -12.22331 -12.11782 -11.72901 -11.62984 -11.43971 -11.20785 -10.81902 -10.57148 -9.85003 -9.06508 -8.49042 -6.17589 0.43684 0.54671 1.26454 1.36128 1.44206 1.53663 1.86785 2.17124 2.81754 2.84665 3.13781 3.45042 3.67579 3.80301 3.90983 3.92456 4.13100 4.17063 4.25740 4.29657 4.48223 4.49326 4.52437 4.54378 4.59577 4.72076 4.73177 4.83641 4.90912 4.98130 5.01020 5.11713 5.21822 5.33033 5.44506 5.56335 5.65024 5.68366 5.99856 6.11111 6.27901 6.80022 6.95321 7.73275 8.73669 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.034847 B = 0.002426 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.330406 B =11540.814369 C =11848.770398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.405 6.405 3 C 0.091 3.909 4 H 0.065 0.935 5 C -0.168 4.168 6 C -0.113 4.113 7 C 0.458 3.542 8 O -0.535 6.535 9 O -0.362 6.362 10 C 0.131 3.869 11 C -0.182 4.182 12 C -0.043 4.043 13 C -0.205 4.205 14 C 0.125 3.875 15 O -0.226 6.226 16 C -0.416 4.416 17 H 0.105 0.895 18 C -0.022 4.022 19 N -0.918 5.918 20 Si 1.020 2.980 21 H -0.263 1.263 22 H -0.271 1.271 23 H -0.252 1.252 24 C -0.244 4.244 25 C -0.043 4.043 26 H 0.088 0.912 27 H 0.035 0.965 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.087 0.913 32 H 0.147 0.853 33 H 0.124 0.876 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.147 0.853 37 H 0.119 0.881 38 H 0.274 0.726 39 H 0.125 0.875 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.157 5.021 -17.500 25.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.325 6.325 3 C 0.033 3.967 4 H 0.083 0.917 5 C -0.225 4.225 6 C -0.150 4.150 7 C 0.303 3.697 8 O -0.425 6.425 9 O -0.279 6.279 10 C 0.058 3.942 11 C -0.183 4.183 12 C -0.061 4.061 13 C -0.225 4.225 14 C 0.074 3.926 15 O -0.132 6.132 16 C -0.491 4.491 17 H 0.122 0.878 18 C -0.220 4.220 19 N -0.556 5.556 20 Si 0.839 3.161 21 H -0.188 1.188 22 H -0.196 1.196 23 H -0.175 1.175 24 C -0.263 4.263 25 C -0.061 4.061 26 H 0.107 0.893 27 H 0.054 0.946 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.106 0.894 32 H 0.165 0.835 33 H 0.142 0.858 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.165 0.835 37 H 0.137 0.863 38 H 0.083 0.917 39 H 0.143 0.857 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -18.031 4.529 -17.192 25.321 hybrid contribution 0.336 0.427 0.836 0.997 sum -17.694 4.956 -16.356 24.600 Atomic orbital electron populations 1.22800 0.80002 1.03187 1.00200 1.87858 1.21088 1.28346 1.95211 1.22044 0.92870 0.85165 0.96578 0.91733 1.22237 1.03277 1.02777 0.94213 1.21792 1.00039 1.07504 0.85639 1.24298 0.82387 0.72636 0.90358 1.90628 1.26113 1.47140 1.78591 1.86626 1.38610 1.80606 1.22025 1.21602 0.93856 1.01873 0.76824 1.19269 0.99439 0.94327 1.05229 1.20890 0.92009 0.98125 0.95061 1.20441 0.99837 0.97068 1.05112 1.19986 0.86868 0.95257 0.90481 1.83952 1.33605 1.34493 1.61154 1.21860 1.03659 0.86047 1.37578 0.87815 1.26623 0.95102 1.03331 0.96924 1.70182 1.13708 1.29655 1.42026 0.84570 0.77603 0.75098 0.78846 1.18799 1.19622 1.17533 1.21249 0.98942 0.98069 1.08080 1.20958 0.93474 0.98155 0.93496 0.89347 0.94624 0.92548 0.91322 0.91554 0.89391 0.83547 0.85834 0.90253 0.90041 0.83499 0.86284 0.91732 0.85701 0.83987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 10.82 113.37 1.23 1.77 16 2 O -0.41 -8.36 9.58 -135.16 -1.30 -9.65 16 3 C 0.09 1.41 2.27 30.59 0.07 1.48 16 4 H 0.06 1.05 7.60 -2.39 -0.02 1.03 16 5 C -0.17 -1.63 9.53 71.98 0.69 -0.94 16 6 C -0.11 -1.75 5.52 29.85 0.16 -1.58 16 7 C 0.46 11.03 7.84 71.24 0.56 11.59 16 8 O -0.53 -15.50 15.17 27.01 0.41 -15.09 16 9 O -0.36 -9.70 10.20 -51.36 -0.52 -10.23 16 10 C 0.13 3.55 5.59 71.24 0.40 3.94 16 11 C -0.18 -5.89 5.52 -19.83 -0.11 -6.00 16 12 C -0.04 -1.46 9.69 22.25 0.22 -1.25 16 13 C -0.21 -8.68 9.99 22.39 0.22 -8.46 16 14 C 0.13 6.17 6.65 22.58 0.15 6.32 16 15 O -0.23 -13.44 9.76 -22.74 -0.22 -13.66 16 16 C -0.42 -23.83 9.49 67.92 0.64 -23.18 16 17 H 0.10 5.42 5.20 -2.91 -0.02 5.41 16 18 C -0.02 -1.22 5.49 84.83 0.47 -0.76 16 19 N -0.92 -55.74 13.67 21.61 0.30 -55.44 16 20 Si 1.02 42.10 29.55 68.60 2.03 44.12 16 21 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 22 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 23 H -0.25 -9.61 7.11 99.48 0.71 -8.90 16 24 C -0.24 -10.46 9.17 22.39 0.21 -10.25 16 25 C -0.04 -1.48 9.69 22.25 0.22 -1.26 16 26 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.04 0.63 8.08 -2.39 -0.02 0.61 16 28 H 0.06 0.65 7.87 -2.39 -0.02 0.63 16 29 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.07 0.60 7.87 -2.38 -0.02 0.58 16 31 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.15 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.08 2.03 8.08 -2.39 -0.02 2.01 16 35 H 0.08 2.03 8.08 -2.39 -0.02 2.01 16 36 H 0.15 4.02 8.06 -2.91 -0.02 3.99 16 37 H 0.12 4.93 8.06 -2.91 -0.02 4.91 16 38 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 39 H 0.13 5.37 5.64 -2.91 -0.02 5.35 16 40 H 0.14 3.93 8.06 -2.91 -0.02 3.91 16 Total: -1.00 -73.64 348.13 6.84 -66.80 By element: Atomic # 1 Polarization: 20.68 SS G_CDS: 1.04 Total: 21.72 kcal Atomic # 6 Polarization: -33.68 SS G_CDS: 5.11 Total: -28.57 kcal Atomic # 7 Polarization: -55.74 SS G_CDS: 0.30 Total: -55.44 kcal Atomic # 8 Polarization: -47.00 SS G_CDS: -1.63 Total: -48.63 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.12 kcal Total: -73.64 6.84 -66.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733474604.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.548 kcal (2) G-P(sol) polarization free energy of solvation -73.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds