Wall clock time and date at job start Tue Mar 31 2020 07:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42898 * 109.46811 * 2 1 4 4 C 1.42903 * 113.99372 * 180.02562 * 3 2 1 5 5 C 1.53006 * 109.46677 * 180.02562 * 4 3 2 6 6 C 1.50699 * 109.46884 * 180.02562 * 5 4 3 7 7 O 1.20821 * 120.00185 * 359.97438 * 6 5 4 8 8 O 1.34231 * 120.00087 * 180.02562 * 6 5 4 9 9 C 1.45196 * 117.00047 * 179.97438 * 8 6 5 10 10 C 1.50706 * 109.47037 * 179.97438 * 9 8 6 11 11 C 1.38294 * 119.93130 * 269.73094 * 10 9 8 12 12 C 1.38099 * 120.07055 * 179.72623 * 11 10 9 13 13 C 1.38885 * 119.92916 * 0.56465 * 12 11 10 14 14 O 1.35746 * 120.07221 * 179.68553 * 13 12 11 15 15 C 1.34828 * 117.00240 * 174.48968 * 14 13 12 16 16 H 1.08006 * 120.00054 * 5.05118 * 15 14 13 17 17 C 1.38655 * 120.00332 * 185.05591 * 15 14 13 18 18 N 1.31553 * 119.99844 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00136 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47289 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47041 * 119.99838 * 19 17 15 22 22 H 1.48501 * 109.47247 * 240.00056 * 19 17 15 23 23 C 1.38888 * 119.85809 * 359.70827 * 13 12 11 24 24 C 1.38097 * 119.93011 * 359.97438 * 23 13 12 25 25 H 1.09001 * 109.47034 * 299.99359 * 1 2 3 26 26 H 1.08995 * 109.47546 * 59.99758 * 1 2 3 27 27 H 1.09002 * 109.47524 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46467 * 240.00141 * 2 1 3 29 29 H 1.08997 * 109.46982 * 120.00747 * 2 1 3 30 30 H 1.09001 * 109.47057 * 60.00453 * 4 3 2 31 31 H 1.08996 * 109.47281 * 300.00274 * 4 3 2 32 32 H 1.09001 * 109.47150 * 60.00334 * 5 4 3 33 33 H 1.08996 * 109.47345 * 300.00059 * 5 4 3 34 34 H 1.08996 * 109.47566 * 299.99750 * 9 8 6 35 35 H 1.09002 * 109.47418 * 60.00155 * 9 8 6 36 36 H 1.08001 * 119.96614 * 359.97036 * 11 10 9 37 37 H 1.08000 * 120.04137 * 180.26759 * 12 11 10 38 38 H 0.97003 * 120.00423 * 179.97438 * 18 17 15 39 39 H 1.08002 * 120.03290 * 179.97438 * 23 13 12 40 40 H 1.07997 * 119.96090 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4600 -0.0006 5 6 3.8253 2.9384 0.0001 6 6 5.3276 3.0573 -0.0011 7 8 6.0125 2.0620 -0.0020 8 8 5.9049 4.2692 -0.0003 9 6 7.3564 4.3079 -0.0010 10 6 7.8206 5.7416 -0.0005 11 6 8.0380 6.3970 -1.1987 12 6 8.4580 7.7125 -1.2017 13 6 8.6734 8.3738 0.0005 14 8 9.0924 9.6650 0.0010 15 6 9.1723 10.2822 1.1971 16 1 8.9876 9.7268 2.1048 17 6 9.4915 11.6300 1.2619 18 7 9.7168 12.3064 0.1563 19 14 9.6014 12.4852 2.9189 20 1 9.3054 11.5106 3.9996 21 1 10.9701 13.0304 3.1047 22 1 8.6155 13.5945 2.9698 23 6 8.4597 7.7111 1.2022 24 6 8.0334 6.3976 1.1983 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8932 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.8332 0.9767 -0.8909 31 1 3.8340 0.9763 0.8891 32 1 3.4230 3.4214 0.8906 33 1 3.4222 3.4224 -0.8893 34 1 7.7338 3.8031 0.8883 35 1 7.7329 3.8048 -0.8917 36 1 7.8753 5.8806 -2.1332 37 1 8.6234 8.2252 -2.1377 38 1 9.9397 13.2494 0.2015 39 1 8.6268 8.2225 2.1387 40 1 7.8666 5.8819 2.1325 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733484362.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:58 Heat of formation + Delta-G solvation = -144.759719 kcal Electronic energy + Delta-G solvation = -21927.202511 eV Core-core repulsion = 18286.906063 eV Total energy + Delta-G solvation = -3640.296448 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.53128 -39.11208 -38.38993 -37.05024 -36.06701 -32.97606 -32.44668 -30.96516 -30.33899 -30.18095 -26.24785 -25.16389 -23.97403 -23.15818 -22.07639 -20.80338 -20.56913 -18.10310 -17.98878 -17.21117 -16.99071 -16.78340 -16.18529 -15.98672 -14.84317 -14.74628 -14.62320 -14.37775 -14.25241 -13.72460 -13.62155 -13.15970 -12.91263 -12.79763 -12.63765 -12.47397 -12.24079 -12.11698 -11.74618 -11.47340 -11.42493 -11.41808 -11.07697 -10.82649 -10.74654 -10.51397 -10.48997 -10.46016 -9.97255 -9.42313 -8.92534 -8.28426 -7.34924 -6.53745 -4.12313 1.89309 2.12395 2.14379 2.68732 3.08232 3.09846 3.15410 3.58348 3.90096 4.41011 4.51849 4.63270 4.70011 4.78705 4.94133 5.00121 5.02785 5.12637 5.14108 5.17639 5.22480 5.29204 5.42682 5.47047 5.53584 5.59983 5.63548 5.73446 5.75246 6.11609 6.31746 6.48081 6.58074 6.78916 6.79343 6.95674 7.13605 7.25355 7.34255 7.69172 7.72268 7.91146 8.91606 9.59401 10.63752 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.028896 B = 0.002192 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.752625 B =12768.136177 C =13182.806185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.059 3.941 3 O -0.391 6.391 4 C 0.075 3.925 5 C -0.116 4.116 6 C 0.465 3.535 7 O -0.519 6.519 8 O -0.348 6.348 9 C 0.130 3.870 10 C -0.206 4.206 11 C -0.048 4.048 12 C -0.196 4.196 13 C 0.163 3.837 14 O -0.172 6.172 15 C -0.393 4.393 16 H 0.095 0.905 17 C 0.040 3.960 18 N -0.858 5.858 19 Si 0.943 3.057 20 H -0.266 1.266 21 H -0.275 1.275 22 H -0.275 1.275 23 C -0.238 4.238 24 C -0.044 4.044 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.071 0.929 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.113 0.887 37 H 0.120 0.880 38 H 0.271 0.729 39 H 0.130 0.870 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.502 -19.544 0.530 23.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.018 4.018 3 O -0.310 6.310 4 C -0.001 4.001 5 C -0.154 4.154 6 C 0.308 3.692 7 O -0.409 6.409 8 O -0.264 6.264 9 C 0.057 3.943 10 C -0.207 4.207 11 C -0.067 4.067 12 C -0.215 4.215 13 C 0.108 3.892 14 O -0.074 6.074 15 C -0.469 4.469 16 H 0.112 0.888 17 C -0.165 4.165 18 N -0.492 5.492 19 Si 0.767 3.233 20 H -0.190 1.190 21 H -0.201 1.201 22 H -0.200 1.200 23 C -0.257 4.257 24 C -0.063 4.063 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.090 0.910 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.132 0.868 33 H 0.132 0.868 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.131 0.869 37 H 0.138 0.862 38 H 0.081 0.919 39 H 0.148 0.852 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -12.234 -19.236 0.284 22.798 hybrid contribution 0.379 0.164 0.866 0.959 sum -11.855 -19.072 1.150 22.485 Atomic orbital electron populations 1.21753 0.93571 1.02316 1.03272 1.22469 0.95605 0.83370 1.00341 1.87815 1.20699 1.26938 1.95587 1.22135 0.81134 0.94953 1.01921 1.21125 0.88761 0.98176 1.07304 1.23316 0.91577 0.81872 0.72406 1.90657 1.65716 1.38379 1.46127 1.86657 1.25576 1.31369 1.82828 1.21731 0.75086 0.95344 1.02102 1.18859 1.12813 0.94976 0.94024 1.20507 0.96362 0.93341 0.96465 1.20201 1.09957 0.94962 0.96389 1.19445 0.90506 0.85895 0.93319 1.83976 1.71280 1.18943 1.33219 1.21426 1.49561 0.92885 0.83052 0.88797 1.25333 0.96315 0.95395 0.99451 1.70044 1.42808 1.09317 1.27076 0.85615 0.78367 0.79342 0.79929 1.19012 1.20060 1.20040 1.21149 1.10437 0.95546 0.98586 1.20619 0.95576 0.93772 0.96322 0.91751 0.91754 0.91035 0.93220 0.93221 0.92230 0.92243 0.86765 0.86766 0.91155 0.91116 0.86871 0.86174 0.91897 0.85235 0.87313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 10.28 37.16 0.38 -0.50 16 2 C 0.06 0.42 6.66 37.16 0.25 0.67 16 3 O -0.39 -3.76 10.34 -35.23 -0.36 -4.12 16 4 C 0.08 0.70 5.23 37.16 0.19 0.89 16 5 C -0.12 -1.10 6.18 -27.88 -0.17 -1.27 16 6 C 0.46 5.92 7.96 36.00 0.29 6.21 16 7 O -0.52 -7.68 15.73 -18.75 -0.29 -7.98 16 8 O -0.35 -5.05 10.20 -39.26 -0.40 -5.45 16 9 C 0.13 1.91 5.59 36.01 0.20 2.11 16 10 C -0.21 -3.55 5.52 -104.58 -0.58 -4.13 16 11 C -0.05 -0.86 9.69 -39.61 -0.38 -1.24 16 12 C -0.20 -4.05 9.99 -39.39 -0.39 -4.45 16 13 C 0.16 3.87 6.65 -39.10 -0.26 3.61 16 14 O -0.17 -4.80 9.76 0.06 0.00 -4.80 16 15 C -0.39 -10.76 9.49 30.89 0.29 -10.47 16 16 H 0.09 2.37 5.20 -52.48 -0.27 2.10 16 17 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 18 N -0.86 -24.69 13.67 55.48 0.76 -23.93 16 19 Si 0.94 20.09 29.55 -169.99 -5.02 15.07 16 20 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 21 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 22 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 23 C -0.24 -5.07 9.17 -39.39 -0.36 -5.43 16 24 C -0.04 -0.81 9.69 -39.61 -0.38 -1.19 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 31 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 32 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.07 0.98 8.08 -51.93 -0.42 0.56 16 35 H 0.07 0.97 8.07 -51.93 -0.42 0.55 16 36 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 37 H 0.12 2.38 8.06 -52.49 -0.42 1.96 16 38 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 39 H 0.13 2.74 5.64 -52.49 -0.30 2.45 16 40 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 350.84 15.07 5.29 5.29 Total: -1.00 -31.36 350.84 -6.67 -38.03 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -5.61 Total: 2.10 kcal Atomic # 6 Polarization: -13.18 SS G_CDS: -1.02 Total: -14.21 kcal Atomic # 7 Polarization: -24.69 SS G_CDS: 0.76 Total: -23.93 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: -1.06 Total: -22.35 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.36 -6.67 -38.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733484362.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.730 kcal (2) G-P(sol) polarization free energy of solvation -31.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds