Wall clock time and date at job start Tue Mar 31 2020 07:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42898 * 109.46811 * 2 1 4 4 C 1.42903 * 113.99372 * 180.02562 * 3 2 1 5 5 C 1.53006 * 109.46677 * 180.02562 * 4 3 2 6 6 C 1.50699 * 109.46884 * 180.02562 * 5 4 3 7 7 O 1.20821 * 120.00185 * 359.97438 * 6 5 4 8 8 O 1.34231 * 120.00087 * 180.02562 * 6 5 4 9 9 C 1.45196 * 117.00047 * 179.97438 * 8 6 5 10 10 C 1.50706 * 109.47037 * 179.97438 * 9 8 6 11 11 C 1.38294 * 119.93130 * 269.73094 * 10 9 8 12 12 C 1.38099 * 120.07055 * 179.72623 * 11 10 9 13 13 C 1.38885 * 119.92916 * 0.56465 * 12 11 10 14 14 O 1.35746 * 120.07221 * 179.68553 * 13 12 11 15 15 C 1.34828 * 117.00240 * 174.48968 * 14 13 12 16 16 H 1.08006 * 120.00054 * 5.05118 * 15 14 13 17 17 C 1.38655 * 120.00332 * 185.05591 * 15 14 13 18 18 N 1.31553 * 119.99844 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00136 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47289 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47041 * 119.99838 * 19 17 15 22 22 H 1.48501 * 109.47247 * 240.00056 * 19 17 15 23 23 C 1.38888 * 119.85809 * 359.70827 * 13 12 11 24 24 C 1.38097 * 119.93011 * 359.97438 * 23 13 12 25 25 H 1.09001 * 109.47034 * 299.99359 * 1 2 3 26 26 H 1.08995 * 109.47546 * 59.99758 * 1 2 3 27 27 H 1.09002 * 109.47524 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46467 * 240.00141 * 2 1 3 29 29 H 1.08997 * 109.46982 * 120.00747 * 2 1 3 30 30 H 1.09001 * 109.47057 * 60.00453 * 4 3 2 31 31 H 1.08996 * 109.47281 * 300.00274 * 4 3 2 32 32 H 1.09001 * 109.47150 * 60.00334 * 5 4 3 33 33 H 1.08996 * 109.47345 * 300.00059 * 5 4 3 34 34 H 1.08996 * 109.47566 * 299.99750 * 9 8 6 35 35 H 1.09002 * 109.47418 * 60.00155 * 9 8 6 36 36 H 1.08001 * 119.96614 * 359.97036 * 11 10 9 37 37 H 1.08000 * 120.04137 * 180.26759 * 12 11 10 38 38 H 0.97003 * 120.00423 * 179.97438 * 18 17 15 39 39 H 1.08002 * 120.03290 * 179.97438 * 23 13 12 40 40 H 1.07997 * 119.96090 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4600 -0.0006 5 6 3.8253 2.9384 0.0001 6 6 5.3276 3.0573 -0.0011 7 8 6.0125 2.0620 -0.0020 8 8 5.9049 4.2692 -0.0003 9 6 7.3564 4.3079 -0.0010 10 6 7.8206 5.7416 -0.0005 11 6 8.0380 6.3970 -1.1987 12 6 8.4580 7.7125 -1.2017 13 6 8.6734 8.3738 0.0005 14 8 9.0924 9.6650 0.0010 15 6 9.1723 10.2822 1.1971 16 1 8.9876 9.7268 2.1048 17 6 9.4915 11.6300 1.2619 18 7 9.7168 12.3064 0.1563 19 14 9.6014 12.4852 2.9189 20 1 9.3054 11.5106 3.9996 21 1 10.9701 13.0304 3.1047 22 1 8.6155 13.5945 2.9698 23 6 8.4597 7.7111 1.2022 24 6 8.0334 6.3976 1.1983 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8932 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.8332 0.9767 -0.8909 31 1 3.8340 0.9763 0.8891 32 1 3.4230 3.4214 0.8906 33 1 3.4222 3.4224 -0.8893 34 1 7.7338 3.8031 0.8883 35 1 7.7329 3.8048 -0.8917 36 1 7.8753 5.8806 -2.1332 37 1 8.6234 8.2252 -2.1377 38 1 9.9397 13.2494 0.2015 39 1 8.6268 8.2225 2.1387 40 1 7.8666 5.8819 2.1325 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733484362.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:58 Heat of formation + Delta-G solvation = -163.077411 kcal Electronic energy + Delta-G solvation = -21927.996826 eV Core-core repulsion = 18286.906063 eV Total energy + Delta-G solvation = -3641.090763 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.61564 -40.78198 -39.11908 -38.53827 -37.35822 -34.37945 -33.66816 -32.17499 -31.84421 -31.18342 -27.86959 -26.73035 -24.95393 -23.69760 -23.68220 -22.24769 -21.65853 -19.90964 -18.94792 -18.90961 -17.88461 -17.79136 -17.06327 -17.00234 -16.39399 -16.25246 -15.77431 -15.58425 -15.39494 -15.25534 -14.99432 -14.52237 -14.30790 -13.95262 -13.79835 -13.52536 -13.20823 -13.05687 -13.04526 -12.79790 -12.62004 -12.42545 -12.24912 -12.09822 -12.06664 -12.02060 -11.68709 -11.60817 -11.20912 -10.83232 -10.61382 -9.84882 -9.06959 -8.49693 -6.18117 0.41856 0.54840 1.13407 1.35900 1.42217 1.54068 1.65982 2.16449 2.71600 2.91951 3.15980 3.45027 3.62668 3.85351 3.90793 3.97483 4.02285 4.14640 4.18525 4.29597 4.34402 4.40025 4.48541 4.51594 4.54293 4.71767 4.72967 4.74612 4.91682 4.98279 5.05190 5.11663 5.21775 5.29286 5.40157 5.52045 5.65203 5.67930 5.99633 6.11320 6.16487 6.68389 6.94904 7.72845 8.73203 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.028896 B = 0.002192 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.752625 B =12768.136177 C =13182.806185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.050 3.950 3 O -0.405 6.405 4 C 0.078 3.922 5 C -0.110 4.110 6 C 0.470 3.530 7 O -0.539 6.539 8 O -0.357 6.357 9 C 0.130 3.870 10 C -0.183 4.183 11 C -0.041 4.041 12 C -0.206 4.206 13 C 0.125 3.875 14 O -0.226 6.226 15 C -0.415 4.415 16 H 0.104 0.896 17 C -0.021 4.021 18 N -0.918 5.918 19 Si 1.020 2.980 20 H -0.251 1.251 21 H -0.268 1.268 22 H -0.269 1.269 23 C -0.246 4.246 24 C -0.043 4.043 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.090 0.910 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.128 0.872 33 H 0.128 0.872 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.151 0.849 37 H 0.120 0.880 38 H 0.274 0.726 39 H 0.124 0.876 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.976 -22.275 1.516 26.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.026 4.026 3 O -0.326 6.326 4 C 0.001 3.999 5 C -0.147 4.147 6 C 0.315 3.685 7 O -0.430 6.430 8 O -0.274 6.274 9 C 0.057 3.943 10 C -0.184 4.184 11 C -0.059 4.059 12 C -0.225 4.225 13 C 0.074 3.926 14 O -0.132 6.132 15 C -0.491 4.491 16 H 0.122 0.878 17 C -0.219 4.219 18 N -0.555 5.555 19 Si 0.839 3.161 20 H -0.174 1.174 21 H -0.193 1.193 22 H -0.194 1.194 23 C -0.265 4.265 24 C -0.061 4.061 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.108 0.892 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.146 0.854 33 H 0.146 0.854 34 H 0.102 0.898 35 H 0.105 0.895 36 H 0.168 0.832 37 H 0.138 0.862 38 H 0.083 0.917 39 H 0.142 0.858 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -13.735 -22.038 1.267 25.999 hybrid contribution 0.691 0.586 0.454 1.013 sum -13.044 -21.453 1.721 25.166 Atomic orbital electron populations 1.21774 0.92649 1.03453 1.02853 1.22690 0.96421 0.82473 1.01058 1.87793 1.20638 1.28452 1.95676 1.22082 0.81236 0.94760 1.01805 1.21169 0.86263 0.98649 1.08609 1.23819 0.92558 0.80844 0.71319 1.90658 1.66394 1.38818 1.47138 1.86622 1.25022 1.32524 1.83227 1.21687 0.75695 0.93183 1.03699 1.19265 1.09639 0.96074 0.93378 1.20913 0.94514 0.92013 0.98486 1.20461 1.10145 0.96328 0.95602 1.20006 0.91972 0.85243 0.95365 1.83948 1.74509 1.21055 1.33737 1.21900 1.49979 0.93651 0.83570 0.87827 1.26609 0.95706 0.95856 1.03771 1.70183 1.45707 1.09799 1.29837 0.84514 0.78596 0.78118 0.74894 1.17378 1.19334 1.19369 1.21256 1.10754 0.96915 0.97575 1.20972 0.94281 0.92521 0.98365 0.92159 0.92148 0.89168 0.92498 0.92520 0.92367 0.92421 0.85408 0.85352 0.89812 0.89550 0.83171 0.86243 0.91731 0.85828 0.84021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 10.28 71.98 0.74 -0.71 16 2 C 0.05 0.61 6.66 71.98 0.48 1.09 16 3 O -0.41 -6.95 10.34 -148.98 -1.54 -8.49 16 4 C 0.08 1.27 5.23 71.98 0.38 1.64 16 5 C -0.11 -1.74 6.18 29.85 0.18 -1.56 16 6 C 0.47 10.44 7.96 71.24 0.57 11.01 16 7 O -0.54 -14.36 15.73 21.98 0.35 -14.01 16 8 O -0.36 -9.03 10.20 -51.43 -0.52 -9.56 16 9 C 0.13 3.28 5.59 71.24 0.40 3.68 16 10 C -0.18 -5.72 5.52 -19.83 -0.11 -5.83 16 11 C -0.04 -1.36 9.69 22.25 0.22 -1.14 16 12 C -0.21 -8.57 9.99 22.39 0.22 -8.34 16 13 C 0.13 6.13 6.65 22.58 0.15 6.28 16 14 O -0.23 -13.43 9.76 -22.68 -0.22 -13.65 16 15 C -0.42 -23.78 9.49 67.92 0.64 -23.14 16 16 H 0.10 5.43 5.20 -2.91 -0.02 5.41 16 17 C -0.02 -1.20 5.49 84.83 0.47 -0.74 16 18 N -0.92 -55.60 13.67 21.61 0.30 -55.30 16 19 Si 1.02 42.17 29.55 68.60 2.03 44.19 16 20 H -0.25 -9.54 7.11 99.48 0.71 -8.83 16 21 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 22 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 23 C -0.25 -10.48 9.17 22.39 0.21 -10.27 16 24 C -0.04 -1.47 9.69 22.25 0.22 -1.26 16 25 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.06 0.95 8.10 -2.39 -0.02 0.93 16 31 H 0.06 0.95 8.10 -2.39 -0.02 0.93 16 32 H 0.13 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.13 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.08 1.95 8.08 -2.39 -0.02 1.93 16 35 H 0.09 1.98 8.07 -2.39 -0.02 1.96 16 36 H 0.15 3.84 8.06 -2.91 -0.02 3.81 16 37 H 0.12 4.86 8.06 -2.91 -0.02 4.84 16 38 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 39 H 0.12 5.32 5.64 -2.91 -0.02 5.31 16 40 H 0.14 3.88 8.06 -2.91 -0.02 3.85 16 Total: -1.00 -71.39 350.84 6.17 -65.22 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: 1.03 Total: 20.89 kcal Atomic # 6 Polarization: -34.05 SS G_CDS: 4.76 Total: -29.29 kcal Atomic # 7 Polarization: -55.60 SS G_CDS: 0.30 Total: -55.30 kcal Atomic # 8 Polarization: -43.76 SS G_CDS: -1.94 Total: -45.70 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.19 kcal Total: -71.39 6.17 -65.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733484362.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.861 kcal (2) G-P(sol) polarization free energy of solvation -71.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds