Wall clock time and date at job start Tue Mar 31 2020 07:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42900 * 109.47103 * 2 1 4 4 C 1.35978 * 116.99671 * 179.97438 * 3 2 1 5 5 C 1.38701 * 120.00552 * 359.73351 * 4 3 2 6 6 C 1.38128 * 119.99977 * 179.76040 * 5 4 3 7 7 C 1.38699 * 120.00196 * 0.51244 * 6 5 4 8 8 O 1.35980 * 119.99935 * 179.72371 * 7 6 5 9 9 C 1.42902 * 117.00206 * 354.34015 * 8 7 6 10 10 C 1.52995 * 109.47328 * 181.56338 * 9 8 7 11 11 C 1.53001 * 109.46984 * 301.56549 * 9 8 7 12 12 C 1.50697 * 109.46935 * 61.56263 * 9 8 7 13 13 O 1.21209 * 120.00238 * 0.02562 * 12 9 8 14 14 O 1.34312 * 119.99996 * 180.02562 * 12 9 8 15 15 C 1.34930 * 116.99972 * 180.02562 * 14 12 9 16 16 H 1.07996 * 120.00023 * 0.02562 * 15 14 12 17 17 C 1.38746 * 119.99693 * 179.97438 * 15 14 12 18 18 N 1.31446 * 120.00299 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99826 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47082 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46939 * 119.99853 * 19 17 15 22 22 H 1.48502 * 109.47477 * 240.00101 * 19 17 15 23 23 C 1.38701 * 119.99863 * 359.74000 * 7 6 5 24 24 C 1.38123 * 119.99901 * 0.02562 * 23 7 6 25 25 H 1.08998 * 109.46845 * 299.99804 * 1 2 3 26 26 H 1.09007 * 109.47042 * 59.99814 * 1 2 3 27 27 H 1.09004 * 109.47333 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47135 * 240.00575 * 2 1 3 29 29 H 1.08994 * 109.47353 * 120.00747 * 2 1 3 30 30 H 1.08003 * 119.99273 * 359.97438 * 5 4 3 31 31 H 1.08002 * 119.99896 * 180.23081 * 6 5 4 32 32 H 1.08999 * 109.47468 * 64.83077 * 10 9 8 33 33 H 1.08999 * 109.47457 * 184.82739 * 10 9 8 34 34 H 1.09005 * 109.47076 * 304.83511 * 10 9 8 35 35 H 1.08995 * 109.47353 * 52.57915 * 11 9 8 36 36 H 1.09004 * 109.47169 * 172.58107 * 11 9 8 37 37 H 1.08999 * 109.47259 * 292.58041 * 11 9 8 38 38 H 0.96998 * 119.99889 * 179.97438 * 18 17 15 39 39 H 1.07997 * 119.99716 * 179.97438 * 23 7 6 40 40 H 1.07997 * 119.99902 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3544 1.5254 0.0005 5 6 4.1994 0.4255 0.0066 6 6 5.5687 0.6065 0.0022 7 6 6.0989 1.8881 0.0024 8 8 7.4470 2.0663 0.0037 9 6 8.2560 0.8952 0.1304 10 6 9.7326 1.2952 0.1511 11 6 7.9053 0.1714 1.4319 12 6 8.0002 -0.0210 -1.0385 13 8 7.2043 0.2976 -1.8953 14 8 8.6541 -1.1905 -1.1307 15 6 8.3791 -1.9632 -2.2022 16 1 7.6612 -1.6311 -2.9374 17 6 9.0195 -3.1839 -2.3597 18 7 9.8936 -3.5879 -1.4651 19 14 8.6382 -4.2540 -3.8427 20 1 7.6266 -3.5780 -4.6939 21 1 9.8795 -4.4718 -4.6281 22 1 8.1060 -5.5627 -3.3851 23 6 5.2539 2.9881 0.0015 24 6 3.8846 2.8071 0.0011 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 3.7865 -0.5725 0.0114 31 1 6.2266 -0.2500 0.0032 32 1 9.9362 1.8873 1.0433 33 1 10.3520 0.3983 0.1613 34 1 9.9618 1.8851 -0.7364 35 1 6.8293 0.0034 1.4757 36 1 8.4244 -0.7865 1.4663 37 1 8.2125 0.7817 2.2812 38 1 10.3410 -4.4415 -1.5751 39 1 5.6668 3.9860 0.0021 40 1 3.2268 3.6635 0.0009 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746181204.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:34 Heat of formation + Delta-G solvation = -117.051118 kcal Electronic energy + Delta-G solvation = -24265.599317 eV Core-core repulsion = 20626.504404 eV Total energy + Delta-G solvation = -3639.094913 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.82379 -39.50693 -38.24819 -36.39003 -35.04503 -33.13229 -32.11812 -31.80608 -30.67873 -28.55236 -26.97033 -25.67783 -23.97021 -23.35482 -22.17839 -21.38732 -19.84506 -18.22867 -17.77935 -17.51164 -16.19124 -16.16996 -16.01678 -15.14191 -15.05735 -14.49182 -14.14393 -14.12817 -13.71648 -13.59587 -13.22788 -13.11657 -12.79670 -12.61431 -12.39766 -12.13954 -11.90878 -11.84574 -11.80092 -11.56258 -11.46233 -11.33168 -11.21444 -10.87987 -10.48807 -10.46460 -10.24566 -10.12469 -9.88352 -8.98391 -8.72244 -8.62610 -7.32448 -6.50281 -4.17960 1.58677 1.80532 3.00690 3.13560 3.20690 3.30262 3.34492 3.51014 3.82271 4.05869 4.34647 4.86482 4.89166 4.98244 5.06005 5.08520 5.17754 5.20334 5.23469 5.38575 5.53488 5.64424 5.69024 5.72315 5.82417 5.85848 5.91418 5.97480 6.01501 6.14796 6.28986 6.36681 6.42798 6.62916 6.64473 6.69282 6.87742 7.31141 7.51894 7.77495 7.86013 8.58932 8.98635 9.71872 10.66906 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.013717 B = 0.005065 C = 0.003975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.724723 B = 5527.303083 C = 7042.671571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.053 3.947 3 O -0.321 6.321 4 C 0.086 3.914 5 C -0.172 4.172 6 C -0.134 4.134 7 C 0.112 3.888 8 O -0.291 6.291 9 C 0.132 3.868 10 C -0.131 4.131 11 C -0.191 4.191 12 C 0.370 3.630 13 O -0.535 6.535 14 O -0.206 6.206 15 C -0.383 4.383 16 H 0.096 0.904 17 C 0.045 3.955 18 N -0.862 5.862 19 Si 0.941 3.059 20 H -0.265 1.265 21 H -0.275 1.275 22 H -0.275 1.275 23 C -0.118 4.118 24 C -0.123 4.123 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.075 0.925 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.126 0.874 31 H 0.139 0.861 32 H 0.071 0.929 33 H 0.094 0.906 34 H 0.068 0.932 35 H 0.077 0.923 36 H 0.091 0.909 37 H 0.073 0.927 38 H 0.270 0.730 39 H 0.133 0.867 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.763 6.983 6.555 13.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.022 4.022 3 O -0.236 6.236 4 C 0.042 3.958 5 C -0.191 4.191 6 C -0.152 4.152 7 C 0.067 3.933 8 O -0.205 6.205 9 C 0.093 3.907 10 C -0.188 4.188 11 C -0.248 4.248 12 C 0.215 3.785 13 O -0.431 6.431 14 O -0.113 6.113 15 C -0.459 4.459 16 H 0.114 0.886 17 C -0.160 4.160 18 N -0.498 5.498 19 Si 0.765 3.235 20 H -0.189 1.189 21 H -0.200 1.200 22 H -0.201 1.201 23 C -0.137 4.137 24 C -0.142 4.142 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.094 0.906 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.143 0.857 31 H 0.156 0.844 32 H 0.090 0.910 33 H 0.113 0.887 34 H 0.087 0.913 35 H 0.096 0.904 36 H 0.109 0.891 37 H 0.091 0.909 38 H 0.080 0.920 39 H 0.151 0.849 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -9.855 7.171 6.354 13.744 hybrid contribution -0.048 -1.122 -0.889 1.432 sum -9.903 6.049 5.465 12.826 Atomic orbital electron populations 1.21757 0.93059 1.02628 1.03238 1.22718 0.95493 0.82501 1.01484 1.86006 1.19213 1.28715 1.89638 1.18780 0.81982 0.94020 1.01067 1.21014 0.93567 0.98001 1.06525 1.21462 0.95574 0.96921 1.01278 1.18701 0.82866 0.93498 0.98223 1.86138 1.14233 1.32108 1.88024 1.21156 0.92769 0.84134 0.92675 1.21769 0.90230 1.03614 1.03199 1.22777 1.04155 1.02409 0.95439 1.23542 0.82508 0.84092 0.88328 1.90660 1.35911 1.74837 1.41725 1.83873 1.56999 1.25979 1.44410 1.21294 1.25580 0.98835 1.00170 0.88623 1.25316 0.95406 0.96447 0.98796 1.69988 1.24787 1.21081 1.33986 0.85639 0.78728 0.79181 0.79911 1.18941 1.20049 1.20098 1.20090 0.91220 0.97506 1.04870 1.20030 0.93903 0.94664 1.05557 0.91719 0.91653 0.90576 0.92081 0.92252 0.85662 0.84404 0.91006 0.88722 0.91302 0.90421 0.89061 0.90850 0.92019 0.84885 0.85067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 10.28 37.16 0.38 -0.93 16 2 C 0.05 0.62 5.46 37.16 0.20 0.82 16 3 O -0.32 -4.70 10.14 -19.67 -0.20 -4.90 16 4 C 0.09 1.39 6.69 -39.24 -0.26 1.13 16 5 C -0.17 -3.00 9.03 -39.45 -0.36 -3.35 16 6 C -0.13 -2.62 5.59 -39.45 -0.22 -2.84 16 7 C 0.11 2.13 5.56 -39.24 -0.22 1.91 16 8 O -0.29 -5.64 9.62 -39.60 -0.38 -6.02 16 9 C 0.13 2.56 1.05 -91.78 -0.10 2.46 16 10 C -0.13 -2.16 8.80 37.15 0.33 -1.83 16 11 C -0.19 -3.19 8.11 37.16 0.30 -2.89 16 12 C 0.37 9.06 4.61 36.00 0.17 9.22 16 13 O -0.53 -14.47 13.14 -25.78 -0.34 -14.81 16 14 O -0.21 -5.65 9.32 -20.73 -0.19 -5.84 16 15 C -0.38 -11.04 9.64 30.92 0.30 -10.74 16 16 H 0.10 2.83 6.86 -52.49 -0.36 2.47 16 17 C 0.04 1.23 5.49 -17.53 -0.10 1.13 16 18 N -0.86 -24.33 13.67 55.48 0.76 -23.57 16 19 Si 0.94 20.91 29.55 -169.99 -5.02 15.89 16 20 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 21 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 22 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 23 C -0.12 -1.92 9.98 -39.45 -0.39 -2.31 16 24 C -0.12 -1.88 9.98 -39.45 -0.39 -2.27 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 27 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.72 7.67 -51.93 -0.40 0.33 16 29 H 0.06 0.64 7.65 -51.93 -0.40 0.24 16 30 H 0.13 1.95 6.29 -52.48 -0.33 1.62 16 31 H 0.14 2.95 3.78 -52.49 -0.20 2.75 16 32 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.09 1.61 8.00 -51.93 -0.42 1.20 16 34 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.08 1.31 4.68 -51.93 -0.24 1.07 16 36 H 0.09 1.59 7.93 -51.93 -0.41 1.18 16 37 H 0.07 1.00 8.13 -51.93 -0.42 0.58 16 38 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 39 H 0.13 1.82 8.06 -52.49 -0.42 1.40 16 40 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 333.18 15.07 5.02 5.02 Total: -1.00 -32.91 333.18 -5.99 -38.89 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -5.27 Total: 5.82 kcal Atomic # 6 Polarization: -10.11 SS G_CDS: -0.36 Total: -10.47 kcal Atomic # 7 Polarization: -24.33 SS G_CDS: 0.76 Total: -23.57 kcal Atomic # 8 Polarization: -30.46 SS G_CDS: -1.11 Total: -31.57 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.91 -5.99 -38.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746181204.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.159 kcal (2) G-P(sol) polarization free energy of solvation -32.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds