Wall clock time and date at job start Tue Mar 31 2020 07:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42900 * 109.47103 * 2 1 4 4 C 1.35978 * 116.99671 * 179.97438 * 3 2 1 5 5 C 1.38701 * 120.00552 * 359.73351 * 4 3 2 6 6 C 1.38128 * 119.99977 * 179.76040 * 5 4 3 7 7 C 1.38699 * 120.00196 * 0.51244 * 6 5 4 8 8 O 1.35980 * 119.99935 * 179.72371 * 7 6 5 9 9 C 1.42902 * 117.00206 * 354.34015 * 8 7 6 10 10 C 1.52995 * 109.47328 * 181.56338 * 9 8 7 11 11 C 1.53001 * 109.46984 * 301.56549 * 9 8 7 12 12 C 1.50697 * 109.46935 * 61.56263 * 9 8 7 13 13 O 1.21209 * 120.00238 * 0.02562 * 12 9 8 14 14 O 1.34312 * 119.99996 * 180.02562 * 12 9 8 15 15 C 1.34930 * 116.99972 * 180.02562 * 14 12 9 16 16 H 1.07996 * 120.00023 * 0.02562 * 15 14 12 17 17 C 1.38746 * 119.99693 * 179.97438 * 15 14 12 18 18 N 1.31446 * 120.00299 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99826 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47082 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46939 * 119.99853 * 19 17 15 22 22 H 1.48502 * 109.47477 * 240.00101 * 19 17 15 23 23 C 1.38701 * 119.99863 * 359.74000 * 7 6 5 24 24 C 1.38123 * 119.99901 * 0.02562 * 23 7 6 25 25 H 1.08998 * 109.46845 * 299.99804 * 1 2 3 26 26 H 1.09007 * 109.47042 * 59.99814 * 1 2 3 27 27 H 1.09004 * 109.47333 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47135 * 240.00575 * 2 1 3 29 29 H 1.08994 * 109.47353 * 120.00747 * 2 1 3 30 30 H 1.08003 * 119.99273 * 359.97438 * 5 4 3 31 31 H 1.08002 * 119.99896 * 180.23081 * 6 5 4 32 32 H 1.08999 * 109.47468 * 64.83077 * 10 9 8 33 33 H 1.08999 * 109.47457 * 184.82739 * 10 9 8 34 34 H 1.09005 * 109.47076 * 304.83511 * 10 9 8 35 35 H 1.08995 * 109.47353 * 52.57915 * 11 9 8 36 36 H 1.09004 * 109.47169 * 172.58107 * 11 9 8 37 37 H 1.08999 * 109.47259 * 292.58041 * 11 9 8 38 38 H 0.96998 * 119.99889 * 179.97438 * 18 17 15 39 39 H 1.07997 * 119.99716 * 179.97438 * 23 7 6 40 40 H 1.07997 * 119.99902 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3544 1.5254 0.0005 5 6 4.1994 0.4255 0.0066 6 6 5.5687 0.6065 0.0022 7 6 6.0989 1.8881 0.0024 8 8 7.4470 2.0663 0.0037 9 6 8.2560 0.8952 0.1304 10 6 9.7326 1.2952 0.1511 11 6 7.9053 0.1714 1.4319 12 6 8.0002 -0.0210 -1.0385 13 8 7.2043 0.2976 -1.8953 14 8 8.6541 -1.1905 -1.1307 15 6 8.3791 -1.9632 -2.2022 16 1 7.6612 -1.6311 -2.9374 17 6 9.0195 -3.1839 -2.3597 18 7 9.8936 -3.5879 -1.4651 19 14 8.6382 -4.2540 -3.8427 20 1 7.6266 -3.5780 -4.6939 21 1 9.8795 -4.4718 -4.6281 22 1 8.1060 -5.5627 -3.3851 23 6 5.2539 2.9881 0.0015 24 6 3.8846 2.8071 0.0011 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 3.7865 -0.5725 0.0114 31 1 6.2266 -0.2500 0.0032 32 1 9.9362 1.8873 1.0433 33 1 10.3520 0.3983 0.1613 34 1 9.9618 1.8851 -0.7364 35 1 6.8293 0.0034 1.4757 36 1 8.4244 -0.7865 1.4663 37 1 8.2125 0.7817 2.2812 38 1 10.3410 -4.4415 -1.5751 39 1 5.6668 3.9860 0.0021 40 1 3.2268 3.6635 0.0009 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000746181204.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:34 Heat of formation + Delta-G solvation = -136.549443 kcal Electronic energy + Delta-G solvation = -24266.444828 eV Core-core repulsion = 20626.504404 eV Total energy + Delta-G solvation = -3639.940424 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.39757 -40.90521 -39.91046 -37.72556 -37.05900 -34.72243 -34.09032 -32.80197 -31.92340 -29.85701 -28.28938 -27.75937 -25.19332 -24.81087 -23.70258 -22.54036 -21.47557 -19.93049 -19.58125 -19.00467 -17.90908 -17.55901 -17.06883 -16.88909 -16.76534 -16.26432 -15.65555 -15.55959 -15.11858 -14.93033 -14.73262 -14.41295 -14.00441 -13.75902 -13.70905 -13.60517 -13.36241 -13.21000 -13.14936 -13.10124 -12.99759 -12.65662 -12.51126 -12.36647 -12.23518 -12.04675 -11.97608 -11.59715 -11.44555 -10.81834 -10.73548 -10.02166 -8.70312 -8.57757 -6.38423 0.25962 0.45471 1.19779 1.30361 1.47451 1.52095 1.93211 2.10140 2.27935 2.51368 2.73070 2.91475 3.64364 3.68888 3.75777 3.82743 4.01746 4.11853 4.15444 4.30556 4.34175 4.37376 4.43831 4.57004 4.61520 4.65908 4.75920 4.81534 4.88324 4.92857 5.03280 5.09315 5.10298 5.14819 5.17463 5.31918 5.36013 5.56537 5.77276 6.19345 6.45376 6.57194 6.85983 7.65931 8.60591 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.013717 B = 0.005065 C = 0.003975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.724723 B = 5527.303083 C = 7042.671571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.043 3.957 3 O -0.323 6.323 4 C 0.087 3.913 5 C -0.185 4.185 6 C -0.155 4.155 7 C 0.083 3.917 8 O -0.293 6.293 9 C 0.135 3.865 10 C -0.127 4.127 11 C -0.183 4.183 12 C 0.371 3.629 13 O -0.566 6.566 14 O -0.227 6.227 15 C -0.421 4.421 16 H 0.075 0.925 17 C 0.004 3.996 18 N -0.894 5.894 19 Si 1.011 2.989 20 H -0.270 1.270 21 H -0.258 1.258 22 H -0.258 1.258 23 C -0.111 4.111 24 C -0.117 4.117 25 H 0.070 0.930 26 H 0.064 0.936 27 H 0.097 0.903 28 H 0.054 0.946 29 H 0.066 0.934 30 H 0.132 0.868 31 H 0.110 0.890 32 H 0.114 0.886 33 H 0.084 0.916 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.111 0.889 38 H 0.280 0.720 39 H 0.162 0.838 40 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.816 7.765 7.050 15.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.032 4.032 3 O -0.238 6.238 4 C 0.042 3.958 5 C -0.204 4.204 6 C -0.174 4.174 7 C 0.039 3.961 8 O -0.207 6.207 9 C 0.095 3.905 10 C -0.184 4.184 11 C -0.239 4.239 12 C 0.219 3.781 13 O -0.464 6.464 14 O -0.135 6.135 15 C -0.497 4.497 16 H 0.093 0.907 17 C -0.197 4.197 18 N -0.530 5.530 19 Si 0.831 3.169 20 H -0.194 1.194 21 H -0.182 1.182 22 H -0.182 1.182 23 C -0.130 4.130 24 C -0.135 4.135 25 H 0.089 0.911 26 H 0.084 0.916 27 H 0.115 0.885 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.150 0.850 31 H 0.127 0.873 32 H 0.132 0.868 33 H 0.103 0.897 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.130 0.870 38 H 0.090 0.910 39 H 0.179 0.821 40 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -10.910 7.961 6.871 15.153 hybrid contribution 0.149 -1.288 -1.001 1.638 sum -10.762 6.673 5.869 13.957 Atomic orbital electron populations 1.21776 0.90578 1.04148 1.03548 1.23018 0.97457 0.81232 1.01520 1.86020 1.18048 1.30517 1.89247 1.18958 0.82650 0.94092 1.00051 1.21130 0.93080 0.99144 1.07042 1.21309 0.96146 0.96517 1.03407 1.19036 0.82937 0.94139 0.99978 1.86118 1.14646 1.31615 1.88343 1.21390 0.94483 0.83475 0.91159 1.21814 0.87802 1.03695 1.05113 1.22726 1.03759 1.02177 0.95271 1.24780 0.80739 0.83484 0.89147 1.90615 1.36958 1.75325 1.43506 1.83893 1.58086 1.27223 1.44303 1.21376 1.26865 1.00424 1.01004 0.90677 1.26404 0.94576 0.96927 1.01826 1.70051 1.25320 1.21985 1.35690 0.84658 0.79015 0.77379 0.75886 1.19419 1.18230 1.18186 1.20472 0.91325 0.97935 1.03225 1.20454 0.94004 0.95341 1.03746 0.91062 0.91648 0.88472 0.92762 0.91590 0.84997 0.87262 0.86750 0.89711 0.91740 0.90995 0.90353 0.87026 0.91036 0.82072 0.81751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 10.28 71.98 0.74 -1.49 16 2 C 0.04 0.95 5.46 71.98 0.39 1.34 16 3 O -0.32 -8.99 10.14 -93.30 -0.95 -9.93 16 4 C 0.09 2.75 6.69 22.49 0.15 2.90 16 5 C -0.19 -6.55 9.03 22.35 0.20 -6.35 16 6 C -0.16 -6.26 5.59 22.35 0.12 -6.13 16 7 C 0.08 3.16 5.56 22.49 0.12 3.28 16 8 O -0.29 -11.26 9.62 -74.29 -0.71 -11.97 16 9 C 0.13 5.27 1.05 -11.54 -0.01 5.26 16 10 C -0.13 -4.11 8.80 71.98 0.63 -3.48 16 11 C -0.18 -6.11 8.11 71.98 0.58 -5.52 16 12 C 0.37 19.04 4.61 71.23 0.33 19.37 16 13 O -0.57 -32.22 13.14 27.21 0.36 -31.86 16 14 O -0.23 -13.13 9.32 14.77 0.14 -12.99 16 15 C -0.42 -25.44 9.64 67.94 0.66 -24.78 16 16 H 0.08 4.72 6.86 -2.91 -0.02 4.70 16 17 C 0.00 0.22 5.49 84.87 0.47 0.69 16 18 N -0.89 -51.30 13.67 21.62 0.30 -51.01 16 19 Si 1.01 43.18 29.55 68.60 2.03 45.21 16 20 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 21 H -0.26 -10.26 7.11 99.48 0.71 -9.56 16 22 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 23 C -0.11 -3.40 9.98 22.35 0.22 -3.18 16 24 C -0.12 -3.31 9.98 22.35 0.22 -3.09 16 25 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 27 H 0.10 1.11 8.14 -2.38 -0.02 1.09 16 28 H 0.05 1.27 7.67 -2.39 -0.02 1.25 16 29 H 0.07 1.37 7.65 -2.39 -0.02 1.35 16 30 H 0.13 4.28 6.29 -2.91 -0.02 4.26 16 31 H 0.11 4.98 3.78 -2.91 -0.01 4.97 16 32 H 0.11 2.70 8.14 -2.39 -0.02 2.68 16 33 H 0.08 2.91 8.00 -2.39 -0.02 2.89 16 34 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 35 H 0.07 2.50 4.68 -2.39 -0.01 2.49 16 36 H 0.08 2.81 7.93 -2.39 -0.02 2.79 16 37 H 0.11 2.83 8.13 -2.39 -0.02 2.81 16 38 H 0.28 14.53 8.31 -92.71 -0.77 13.76 16 39 H 0.16 3.93 8.06 -2.91 -0.02 3.90 16 40 H 0.16 3.52 8.06 -2.91 -0.02 3.49 16 Total: -1.00 -74.20 333.18 7.05 -67.15 By element: Atomic # 1 Polarization: 25.55 SS G_CDS: 1.05 Total: 26.60 kcal Atomic # 6 Polarization: -26.02 SS G_CDS: 4.84 Total: -21.18 kcal Atomic # 7 Polarization: -51.30 SS G_CDS: 0.30 Total: -51.01 kcal Atomic # 8 Polarization: -65.60 SS G_CDS: -1.17 Total: -66.76 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -74.20 7.05 -67.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746181204.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.400 kcal (2) G-P(sol) polarization free energy of solvation -74.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds