Wall clock time and date at job start Tue Mar 31 2020 07:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47216 * 2 1 4 4 O 1.42900 * 109.47165 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.47044 * 239.99827 * 2 1 3 6 6 O 1.42901 * 109.47124 * 59.99987 * 5 2 1 7 7 C 1.50696 * 109.46971 * 119.99959 * 2 1 3 8 8 O 1.20823 * 120.00135 * 119.99847 * 7 2 1 9 9 O 1.34227 * 120.00138 * 300.00190 * 7 2 1 10 10 C 1.45202 * 117.00359 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47062 * 179.97438 * 10 9 7 12 12 C 1.38635 * 119.74771 * 269.72351 * 11 10 9 13 13 C 1.37624 * 120.24964 * 179.72094 * 12 11 10 14 14 C 1.40717 * 119.73679 * 0.57836 * 13 12 11 15 15 C 1.41402 * 120.23847 * 179.67688 * 14 13 12 16 16 H 1.07998 * 120.00074 * 204.40505 * 15 14 13 17 17 C 1.39945 * 119.99874 * 24.40735 * 15 14 13 18 18 N 1.30824 * 120.00405 * 17.84641 * 17 15 14 19 19 Si 1.86797 * 119.99936 * 197.84469 * 17 15 14 20 20 H 1.48502 * 109.47151 * 90.00147 * 19 17 15 21 21 H 1.48497 * 109.47468 * 210.00136 * 19 17 15 22 22 H 1.48500 * 109.47187 * 330.00150 * 19 17 15 23 23 C 1.40710 * 119.51686 * 359.69906 * 14 13 12 24 24 C 1.37615 * 119.74272 * 0.02562 * 23 14 13 25 25 H 1.08994 * 109.47118 * 300.00443 * 1 2 3 26 26 H 1.09011 * 109.46646 * 60.00134 * 1 2 3 27 27 H 1.09001 * 109.47458 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46756 * 299.99670 * 3 2 1 29 29 H 1.08994 * 109.47439 * 59.99753 * 3 2 1 30 30 H 0.96697 * 114.00239 * 179.97438 * 4 3 2 31 31 H 1.08997 * 109.46979 * 180.02562 * 5 2 1 32 32 H 1.09001 * 109.47113 * 300.00358 * 5 2 1 33 33 H 0.96695 * 113.99750 * 179.97438 * 6 5 2 34 34 H 1.08996 * 109.46887 * 299.99947 * 10 9 7 35 35 H 1.08998 * 109.46721 * 59.99644 * 10 9 7 36 36 H 1.08005 * 119.87970 * 359.97438 * 12 11 10 37 37 H 1.07997 * 120.13071 * 180.27955 * 13 12 11 38 38 H 0.97002 * 120.00394 * 180.02562 * 18 17 15 39 39 H 1.08003 * 120.12782 * 179.97438 * 23 14 13 40 40 H 1.08003 * 119.87400 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 -0.0006 5 6 2.0400 -0.7213 -1.2493 6 8 1.5637 -0.0477 -2.4161 7 6 2.0323 -0.7104 1.2304 8 8 2.7269 -1.6928 1.1196 9 8 1.7080 -0.2518 2.4496 10 6 2.2266 -0.9863 3.5897 11 6 1.7627 -0.3290 4.8639 12 6 2.5370 0.6612 5.4486 13 6 2.1204 1.2724 6.6092 14 6 0.9094 0.8800 7.2088 15 6 0.4746 1.4960 8.4050 16 1 -0.1987 0.9730 9.0679 17 6 0.9167 2.7835 8.7297 18 7 1.4314 3.5513 7.8040 19 14 0.7717 3.4057 10.4850 20 1 2.0060 3.0616 11.2357 21 1 0.5936 4.8799 10.4746 22 1 -0.3996 2.7703 11.1404 23 6 0.1345 -0.1302 6.6096 24 6 0.5679 -0.7235 5.4460 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3634 -1.0277 0.0005 28 1 1.6767 1.9562 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 3.8624 2.3258 -0.0010 31 1 3.1300 -0.7217 -1.2490 32 1 1.6766 -1.7490 -1.2492 33 1 1.8493 -0.4510 -3.2472 34 1 1.8624 -2.0131 3.5566 35 1 3.3161 -0.9861 3.5569 36 1 3.4688 0.9570 4.9894 37 1 2.7229 2.0467 7.0606 38 1 1.7382 4.4436 8.0292 39 1 -0.7964 -0.4393 7.0616 40 1 -0.0253 -1.4988 4.9841 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000754864111.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:18 Heat of formation + Delta-G solvation = -178.752337 kcal Electronic energy + Delta-G solvation = -23423.806514 eV Core-core repulsion = 19782.036035 eV Total energy + Delta-G solvation = -3641.770479 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.51407 -38.16223 -37.51164 -36.33087 -35.95587 -33.92275 -33.64843 -30.75740 -29.37372 -27.27772 -26.68495 -25.92851 -24.27407 -22.77099 -21.08874 -20.05531 -19.43554 -17.96628 -17.40058 -17.38731 -16.90366 -16.07336 -15.95784 -15.36925 -15.07859 -14.86095 -14.29442 -13.89118 -13.78914 -13.47048 -13.18437 -12.75580 -12.53054 -12.41109 -12.32224 -12.04617 -11.98858 -11.74224 -11.68106 -11.20200 -11.01212 -10.88766 -10.75603 -10.44230 -10.27431 -10.18468 -10.05425 -9.91574 -9.67265 -9.46879 -9.23328 -7.56878 -7.45766 -6.87331 -4.47223 2.40884 2.48333 2.91375 2.99982 3.02754 3.05121 3.27652 3.85000 3.98666 4.25100 4.46157 4.64179 4.69951 5.08045 5.16682 5.39075 5.46612 5.52655 5.61408 5.63559 5.67762 5.71186 5.78433 5.80922 6.05330 6.16480 6.25152 6.31537 6.85656 6.89477 6.96939 7.17952 7.26067 7.39226 7.51207 7.53654 7.73496 7.95236 8.00883 8.09155 8.18658 8.53419 8.77971 8.86208 10.06419 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.027861 B = 0.003171 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.759176 B = 8828.425261 C = 9172.395644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.051 4.051 3 C 0.090 3.910 4 O -0.572 6.572 5 C 0.101 3.899 6 O -0.570 6.570 7 C 0.476 3.524 8 O -0.519 6.519 9 O -0.344 6.344 10 C 0.136 3.864 11 C -0.235 4.235 12 C -0.075 4.075 13 C -0.170 4.170 14 C 0.118 3.882 15 C -0.457 4.457 16 H 0.080 0.920 17 C 0.075 3.925 18 N -0.785 5.785 19 Si 0.911 3.089 20 H -0.267 1.267 21 H -0.277 1.277 22 H -0.261 1.261 23 C -0.230 4.230 24 C -0.064 4.064 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.383 0.617 31 H 0.064 0.936 32 H 0.053 0.947 33 H 0.382 0.618 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.088 0.912 37 H 0.120 0.880 38 H 0.283 0.717 39 H 0.095 0.905 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.538 -2.063 -13.993 14.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.052 4.052 3 C 0.012 3.988 4 O -0.378 6.378 5 C 0.023 3.977 6 O -0.376 6.376 7 C 0.319 3.681 8 O -0.409 6.409 9 O -0.260 6.260 10 C 0.064 3.936 11 C -0.236 4.236 12 C -0.094 4.094 13 C -0.190 4.190 14 C 0.116 3.884 15 C -0.485 4.485 16 H 0.098 0.902 17 C -0.144 4.144 18 N -0.410 5.410 19 Si 0.735 3.265 20 H -0.192 1.192 21 H -0.202 1.202 22 H -0.185 1.185 23 C -0.249 4.249 24 C -0.082 4.082 25 H 0.094 0.906 26 H 0.098 0.902 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.231 0.769 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.230 0.770 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.107 0.893 37 H 0.138 0.862 38 H 0.094 0.906 39 H 0.113 0.887 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.461 -2.375 -13.546 13.761 hybrid contribution 0.376 0.509 0.383 0.739 sum 0.838 -1.866 -13.164 13.322 Atomic orbital electron populations 1.21757 0.90315 1.03406 1.04097 1.20438 0.98358 0.95844 0.90548 1.22104 0.81373 0.93731 1.01623 1.86444 1.19443 1.34120 1.97802 1.21799 0.98627 0.93817 0.83476 1.86345 1.77579 1.57655 1.16007 1.23005 0.77209 0.82346 0.85524 1.90602 1.35972 1.26552 1.87731 1.86678 1.69117 1.55979 1.14246 1.21736 0.97457 0.93539 0.80819 1.18678 1.00729 1.06987 0.97213 1.20546 0.97660 0.94982 0.96179 1.21295 0.97511 1.02703 0.97444 1.17685 0.89912 0.89488 0.91350 1.19687 1.24922 0.99240 1.04681 0.90160 1.25969 0.92766 0.96620 0.99033 1.69828 1.29201 1.08063 1.33875 0.86269 0.79953 0.78102 0.82192 1.19155 1.20214 1.18515 1.20959 1.00711 1.04665 0.98609 1.20388 0.94284 0.97899 0.95655 0.90551 0.90188 0.91647 0.91506 0.91820 0.76928 0.91785 0.92855 0.77040 0.92173 0.92038 0.89333 0.86244 0.90644 0.88724 0.89323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 8.26 37.16 0.31 -1.33 16 2 C -0.05 -0.69 0.63 -155.66 -0.10 -0.79 16 3 C 0.09 1.13 5.71 37.16 0.21 1.34 16 4 O -0.57 -7.46 12.61 -35.23 -0.44 -7.90 16 5 C 0.10 1.22 5.06 37.16 0.19 1.41 16 6 O -0.57 -5.62 12.31 -35.23 -0.43 -6.05 16 7 C 0.48 8.29 6.20 36.00 0.22 8.51 16 8 O -0.52 -10.01 15.73 -18.75 -0.29 -10.30 16 9 O -0.34 -6.60 10.01 -39.25 -0.39 -6.99 16 10 C 0.14 2.69 5.58 36.01 0.20 2.89 16 11 C -0.23 -5.24 5.54 -104.33 -0.58 -5.82 16 12 C -0.08 -1.76 9.67 -39.66 -0.38 -2.15 16 13 C -0.17 -4.36 8.70 -38.87 -0.34 -4.70 16 14 C 0.12 3.10 5.58 -106.82 -0.60 2.50 16 15 C -0.46 -11.80 9.05 -37.74 -0.34 -12.14 16 16 H 0.08 1.99 7.91 -52.49 -0.41 1.57 16 17 C 0.08 1.83 5.14 -17.34 -0.09 1.74 16 18 N -0.79 -19.74 10.95 55.55 0.61 -19.13 16 19 Si 0.91 18.09 29.59 -169.99 -5.03 13.06 16 20 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 21 H -0.28 -5.38 7.11 56.52 0.40 -4.98 16 22 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 23 C -0.23 -5.57 9.80 -38.88 -0.38 -5.95 16 24 C -0.06 -1.43 9.67 -39.66 -0.38 -1.82 16 25 H 0.08 0.94 8.11 -51.93 -0.42 0.52 16 26 H 0.08 0.83 7.68 -51.92 -0.40 0.43 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.07 0.73 7.68 -51.93 -0.40 0.33 16 29 H 0.06 0.84 8.11 -51.93 -0.42 0.42 16 30 H 0.38 3.21 9.12 45.56 0.42 3.62 16 31 H 0.06 0.85 7.64 -51.93 -0.40 0.46 16 32 H 0.05 0.63 8.10 -51.93 -0.42 0.20 16 33 H 0.38 2.02 9.12 45.56 0.42 2.44 16 34 H 0.06 1.12 8.07 -51.93 -0.42 0.70 16 35 H 0.06 1.19 8.07 -51.93 -0.42 0.77 16 36 H 0.09 1.91 8.06 -52.48 -0.42 1.48 16 37 H 0.12 3.14 6.16 -52.49 -0.32 2.82 16 38 H 0.28 6.43 8.30 -40.82 -0.34 6.09 16 39 H 0.09 2.14 8.06 -52.48 -0.42 1.72 16 40 H 0.09 1.76 8.06 -52.48 -0.42 1.33 16 LS Contribution 343.49 15.07 5.18 5.18 Total: -1.00 -30.86 343.49 -6.90 -37.76 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -4.03 Total: 10.67 kcal Atomic # 6 Polarization: -14.23 SS G_CDS: -2.06 Total: -16.28 kcal Atomic # 7 Polarization: -19.74 SS G_CDS: 0.61 Total: -19.13 kcal Atomic # 8 Polarization: -29.68 SS G_CDS: -1.57 Total: -31.25 kcal Atomic # 14 Polarization: 18.09 SS G_CDS: -5.03 Total: 13.06 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.86 -6.90 -37.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754864111.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.992 kcal (2) G-P(sol) polarization free energy of solvation -30.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds