Wall clock time and date at job start Tue Mar 31 2020 07:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47216 * 2 1 4 4 O 1.42900 * 109.47165 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.47044 * 239.99827 * 2 1 3 6 6 O 1.42901 * 109.47124 * 59.99987 * 5 2 1 7 7 C 1.50696 * 109.46971 * 119.99959 * 2 1 3 8 8 O 1.20823 * 120.00135 * 119.99847 * 7 2 1 9 9 O 1.34227 * 120.00138 * 300.00190 * 7 2 1 10 10 C 1.45202 * 117.00359 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47062 * 179.97438 * 10 9 7 12 12 C 1.38635 * 119.74771 * 269.72351 * 11 10 9 13 13 C 1.37624 * 120.24964 * 179.72094 * 12 11 10 14 14 C 1.40717 * 119.73679 * 0.57836 * 13 12 11 15 15 C 1.41402 * 120.23847 * 179.67688 * 14 13 12 16 16 H 1.07998 * 120.00074 * 204.40505 * 15 14 13 17 17 C 1.39945 * 119.99874 * 24.40735 * 15 14 13 18 18 N 1.30824 * 120.00405 * 17.84641 * 17 15 14 19 19 Si 1.86797 * 119.99936 * 197.84469 * 17 15 14 20 20 H 1.48502 * 109.47151 * 90.00147 * 19 17 15 21 21 H 1.48497 * 109.47468 * 210.00136 * 19 17 15 22 22 H 1.48500 * 109.47187 * 330.00150 * 19 17 15 23 23 C 1.40710 * 119.51686 * 359.69906 * 14 13 12 24 24 C 1.37615 * 119.74272 * 0.02562 * 23 14 13 25 25 H 1.08994 * 109.47118 * 300.00443 * 1 2 3 26 26 H 1.09011 * 109.46646 * 60.00134 * 1 2 3 27 27 H 1.09001 * 109.47458 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46756 * 299.99670 * 3 2 1 29 29 H 1.08994 * 109.47439 * 59.99753 * 3 2 1 30 30 H 0.96697 * 114.00239 * 179.97438 * 4 3 2 31 31 H 1.08997 * 109.46979 * 180.02562 * 5 2 1 32 32 H 1.09001 * 109.47113 * 300.00358 * 5 2 1 33 33 H 0.96695 * 113.99750 * 179.97438 * 6 5 2 34 34 H 1.08996 * 109.46887 * 299.99947 * 10 9 7 35 35 H 1.08998 * 109.46721 * 59.99644 * 10 9 7 36 36 H 1.08005 * 119.87970 * 359.97438 * 12 11 10 37 37 H 1.07997 * 120.13071 * 180.27955 * 13 12 11 38 38 H 0.97002 * 120.00394 * 180.02562 * 18 17 15 39 39 H 1.08003 * 120.12782 * 179.97438 * 23 14 13 40 40 H 1.08003 * 119.87400 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 -0.0006 5 6 2.0400 -0.7213 -1.2493 6 8 1.5637 -0.0477 -2.4161 7 6 2.0323 -0.7104 1.2304 8 8 2.7269 -1.6928 1.1196 9 8 1.7080 -0.2518 2.4496 10 6 2.2266 -0.9863 3.5897 11 6 1.7627 -0.3290 4.8639 12 6 2.5370 0.6612 5.4486 13 6 2.1204 1.2724 6.6092 14 6 0.9094 0.8800 7.2088 15 6 0.4746 1.4960 8.4050 16 1 -0.1987 0.9730 9.0679 17 6 0.9167 2.7835 8.7297 18 7 1.4314 3.5513 7.8040 19 14 0.7717 3.4057 10.4850 20 1 2.0060 3.0616 11.2357 21 1 0.5936 4.8799 10.4746 22 1 -0.3996 2.7703 11.1404 23 6 0.1345 -0.1302 6.6096 24 6 0.5679 -0.7235 5.4460 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3634 -1.0277 0.0005 28 1 1.6767 1.9562 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 3.8624 2.3258 -0.0010 31 1 3.1300 -0.7217 -1.2490 32 1 1.6766 -1.7490 -1.2492 33 1 1.8493 -0.4510 -3.2472 34 1 1.8624 -2.0131 3.5566 35 1 3.3161 -0.9861 3.5569 36 1 3.4688 0.9570 4.9894 37 1 2.7229 2.0467 7.0606 38 1 1.7382 4.4436 8.0292 39 1 -0.7964 -0.4393 7.0616 40 1 -0.0253 -1.4988 4.9841 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000754864111.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:18 Heat of formation + Delta-G solvation = -200.191365 kcal Electronic energy + Delta-G solvation = -23424.736180 eV Core-core repulsion = 19782.036035 eV Total energy + Delta-G solvation = -3642.700145 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.85957 -39.64731 -38.90826 -37.51898 -37.14548 -35.70081 -34.69292 -32.55614 -31.24398 -29.02491 -27.61595 -26.89406 -25.93386 -24.17358 -22.96174 -21.86196 -20.68442 -19.27769 -18.91591 -18.36396 -18.29122 -17.46786 -17.30875 -16.95661 -16.20092 -16.05567 -15.75457 -15.52013 -15.41249 -14.64218 -14.42455 -14.21164 -13.94469 -13.85701 -13.69539 -13.54003 -13.31083 -13.16310 -12.88214 -12.71321 -12.69311 -12.58579 -12.12933 -11.83231 -11.70515 -11.55680 -11.40025 -11.29449 -11.07798 -11.03030 -10.87409 -9.45265 -9.34560 -8.69420 -6.40556 0.70582 1.09680 1.12573 1.38170 1.42814 1.52255 1.79748 2.19226 2.68574 3.06437 3.35532 3.48945 3.65206 3.74451 4.03816 4.07877 4.08714 4.15000 4.42674 4.45771 4.47775 4.53561 4.56471 4.58475 4.67724 4.84766 4.87890 4.99584 5.11180 5.20134 5.29140 5.38058 5.46390 5.63980 5.86930 6.04664 6.13419 6.30668 6.63290 6.66051 6.78110 6.85208 6.87662 6.96067 8.27204 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.027861 B = 0.003171 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.759176 B = 8828.425261 C = 9172.395644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.054 4.054 3 C 0.092 3.908 4 O -0.591 6.591 5 C 0.111 3.889 6 O -0.571 6.571 7 C 0.474 3.526 8 O -0.540 6.540 9 O -0.354 6.354 10 C 0.141 3.859 11 C -0.230 4.230 12 C -0.080 4.080 13 C -0.193 4.193 14 C 0.089 3.911 15 C -0.492 4.492 16 H 0.080 0.920 17 C 0.035 3.965 18 N -0.817 5.817 19 Si 0.985 3.015 20 H -0.262 1.262 21 H -0.267 1.267 22 H -0.257 1.257 23 C -0.244 4.244 24 C -0.064 4.064 25 H 0.067 0.933 26 H 0.098 0.902 27 H 0.069 0.931 28 H 0.089 0.911 29 H 0.054 0.946 30 H 0.401 0.599 31 H 0.049 0.951 32 H 0.056 0.944 33 H 0.403 0.597 34 H 0.074 0.926 35 H 0.063 0.937 36 H 0.103 0.897 37 H 0.104 0.896 38 H 0.291 0.709 39 H 0.104 0.896 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.052 -2.068 -15.098 15.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.056 4.056 3 C 0.014 3.986 4 O -0.401 6.401 5 C 0.033 3.967 6 O -0.380 6.380 7 C 0.319 3.681 8 O -0.431 6.431 9 O -0.270 6.270 10 C 0.068 3.932 11 C -0.232 4.232 12 C -0.099 4.099 13 C -0.212 4.212 14 C 0.086 3.914 15 C -0.521 4.521 16 H 0.098 0.902 17 C -0.181 4.181 18 N -0.442 5.442 19 Si 0.805 3.195 20 H -0.187 1.187 21 H -0.191 1.191 22 H -0.181 1.181 23 C -0.263 4.263 24 C -0.082 4.082 25 H 0.086 0.914 26 H 0.117 0.883 27 H 0.088 0.912 28 H 0.107 0.893 29 H 0.072 0.928 30 H 0.252 0.748 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.254 0.746 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.121 0.879 37 H 0.122 0.878 38 H 0.102 0.898 39 H 0.122 0.878 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -0.018 -2.379 -14.692 14.883 hybrid contribution 0.567 0.457 0.542 0.908 sum 0.549 -1.922 -14.150 14.290 Atomic orbital electron populations 1.21760 0.88804 1.03915 1.04601 1.20634 0.99542 0.96168 0.89211 1.22120 0.81293 0.93030 1.02173 1.86403 1.19758 1.36068 1.97831 1.21551 0.97574 0.93824 0.83735 1.86295 1.77466 1.57762 1.16432 1.23778 0.76556 0.82140 0.85676 1.90587 1.36986 1.27642 1.87858 1.86647 1.69340 1.56150 1.14889 1.21578 0.97562 0.93817 0.80193 1.18953 1.00203 1.05919 0.98085 1.20754 0.98417 0.95071 0.95614 1.21257 0.97827 1.03430 0.98682 1.18038 0.90567 0.90605 0.92184 1.19940 1.26386 1.00420 1.05332 0.90166 1.26823 0.91877 0.96223 1.03161 1.69872 1.29736 1.08686 1.35922 0.85156 0.79990 0.77797 0.76515 1.18691 1.19140 1.18066 1.21172 1.01096 1.04689 0.99364 1.20697 0.94490 0.98080 0.94938 0.91385 0.88300 0.91172 0.89339 0.92770 0.74833 0.93319 0.92578 0.74559 0.90813 0.91854 0.87904 0.87758 0.89850 0.87807 0.86382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.86 8.26 71.98 0.59 -2.27 16 2 C -0.05 -1.39 0.63 -52.93 -0.03 -1.42 16 3 C 0.09 2.15 5.71 71.98 0.41 2.56 16 4 O -0.59 -14.59 12.61 -148.98 -1.88 -16.47 16 5 C 0.11 2.47 5.06 71.98 0.36 2.84 16 6 O -0.57 -9.55 12.31 -148.98 -1.83 -11.38 16 7 C 0.47 15.92 6.20 71.23 0.44 16.36 16 8 O -0.54 -20.25 15.73 21.97 0.35 -19.91 16 9 O -0.35 -13.17 10.01 -51.39 -0.51 -13.68 16 10 C 0.14 5.37 5.58 71.24 0.40 5.77 16 11 C -0.23 -10.13 5.54 -19.68 -0.11 -10.24 16 12 C -0.08 -3.79 9.67 22.22 0.21 -3.58 16 13 C -0.19 -10.16 8.70 22.73 0.20 -9.96 16 14 C 0.09 4.76 5.58 -21.29 -0.12 4.64 16 15 C -0.49 -26.09 9.05 23.46 0.21 -25.87 16 16 H 0.08 4.08 7.91 -2.91 -0.02 4.05 16 17 C 0.04 1.74 5.14 85.26 0.44 2.18 16 18 N -0.82 -41.93 10.95 21.83 0.24 -41.69 16 19 Si 0.99 37.17 29.59 68.60 2.03 39.20 16 20 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 21 H -0.27 -9.54 7.11 99.48 0.71 -8.84 16 22 H -0.26 -9.42 7.11 99.48 0.71 -8.72 16 23 C -0.24 -11.88 9.80 22.73 0.22 -11.66 16 24 C -0.06 -2.81 9.67 22.22 0.21 -2.59 16 25 H 0.07 1.57 8.11 -2.39 -0.02 1.55 16 26 H 0.10 1.75 7.68 -2.38 -0.02 1.73 16 27 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.09 1.70 7.68 -2.39 -0.02 1.68 16 29 H 0.05 1.36 8.11 -2.39 -0.02 1.35 16 30 H 0.40 6.15 9.12 -74.06 -0.68 5.47 16 31 H 0.05 1.23 7.64 -2.39 -0.02 1.21 16 32 H 0.06 1.20 8.10 -2.39 -0.02 1.18 16 33 H 0.40 3.02 9.12 -74.06 -0.68 2.35 16 34 H 0.07 2.61 8.07 -2.39 -0.02 2.59 16 35 H 0.06 2.39 8.07 -2.39 -0.02 2.37 16 36 H 0.10 4.45 8.06 -2.91 -0.02 4.42 16 37 H 0.10 5.72 6.16 -2.91 -0.02 5.70 16 38 H 0.29 13.40 8.30 -92.71 -0.77 12.63 16 39 H 0.10 4.72 8.06 -2.91 -0.02 4.70 16 40 H 0.12 4.43 8.06 -2.91 -0.02 4.41 16 Total: -1.00 -66.42 343.49 1.56 -64.86 By element: Atomic # 1 Polarization: 32.59 SS G_CDS: -0.28 Total: 32.31 kcal Atomic # 6 Polarization: -36.68 SS G_CDS: 3.45 Total: -33.23 kcal Atomic # 7 Polarization: -41.93 SS G_CDS: 0.24 Total: -41.69 kcal Atomic # 8 Polarization: -57.56 SS G_CDS: -3.88 Total: -61.44 kcal Atomic # 14 Polarization: 37.17 SS G_CDS: 2.03 Total: 39.20 kcal Total: -66.42 1.56 -64.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754864111.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.329 kcal (2) G-P(sol) polarization free energy of solvation -66.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds