Wall clock time and date at job start Tue Mar 31 2020 06:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52996 * 109.47041 * 2 1 4 4 C 1.50700 * 109.46921 * 120.00218 * 2 1 3 5 5 N 1.28014 * 119.99872 * 0.02562 * 4 2 1 6 6 N 1.40104 * 119.99535 * 180.02562 * 5 4 2 7 7 C 1.46506 * 119.99589 * 179.97438 * 6 5 4 8 8 C 1.50699 * 109.46928 * 179.97438 * 7 6 5 9 9 C 1.38262 * 119.99465 * 269.72318 * 8 7 6 10 10 C 1.38221 * 120.02890 * 179.76993 * 9 8 7 11 11 C 1.38240 * 120.00891 * 0.50578 * 10 9 8 12 12 C 1.38330 * 119.98851 * 359.74508 * 11 10 9 13 13 Cl 1.73598 * 120.01426 * 180.02562 * 12 11 10 14 14 C 1.38193 * 119.99362 * 89.99622 * 8 7 6 15 15 C 1.52998 * 109.47021 * 239.99996 * 2 1 3 16 16 C 1.50701 * 109.47419 * 60.00122 * 15 2 1 17 17 H 1.08006 * 119.99747 * 359.97438 * 16 15 2 18 18 C 1.37873 * 120.00198 * 179.97438 * 16 15 2 19 19 N 1.31512 * 120.00354 * 359.97438 * 18 16 15 20 20 Si 1.86808 * 119.99735 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47094 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47268 * 119.99792 * 20 18 16 23 23 H 1.48503 * 109.46841 * 239.99673 * 20 18 16 24 24 H 1.08995 * 109.46784 * 299.99867 * 1 2 3 25 25 H 1.08996 * 109.46812 * 60.00169 * 1 2 3 26 26 H 1.08993 * 109.46738 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46562 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.47637 * 299.99881 * 3 2 1 29 29 H 1.09000 * 109.46797 * 60.00358 * 3 2 1 30 30 H 1.07999 * 119.99988 * 179.97438 * 4 2 1 31 31 H 0.96999 * 120.00331 * 359.97438 * 6 5 4 32 32 H 1.09004 * 109.47073 * 299.99530 * 7 6 5 33 33 H 1.09000 * 109.47212 * 59.99612 * 7 6 5 34 34 H 1.08000 * 119.98245 * 359.97438 * 9 8 7 35 35 H 1.08000 * 119.99505 * 180.25268 * 10 9 8 36 36 H 1.07998 * 120.00377 * 179.77005 * 11 10 9 37 37 H 1.08006 * 120.00895 * 359.96140 * 14 8 7 38 38 H 1.09004 * 109.47239 * 180.02562 * 15 2 1 39 39 H 1.09006 * 109.47458 * 300.00338 * 15 2 1 40 40 H 0.96996 * 120.00379 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 1.2305 5 7 1.2005 -1.1974 2.0728 6 7 1.6675 -1.8574 3.2170 7 6 0.7154 -2.4142 4.1813 8 6 1.4689 -3.0668 5.3115 9 6 1.8095 -4.4046 5.2336 10 6 2.5047 -5.0027 6.2678 11 6 2.8508 -4.2661 7.3852 12 6 2.5058 -2.9289 7.4660 13 17 2.9406 -2.0031 8.8687 14 6 1.8144 -2.3295 6.4281 15 6 2.0401 -0.7212 -1.2492 16 6 1.5378 -0.0109 -2.4797 17 1 0.9165 0.8671 -2.3806 18 6 1.8713 -0.4816 -3.7320 19 7 2.6282 -1.5503 -3.8527 20 14 1.2492 0.3995 -5.2572 21 1 0.4236 1.5657 -4.8530 22 1 2.4044 0.8664 -6.0650 23 1 0.4245 -0.5337 -6.0661 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0276 -0.0005 27 1 3.1300 1.4424 0.0005 28 1 1.6768 1.9564 -0.8899 29 1 1.6768 1.9562 0.8900 30 1 3.0942 -0.8095 1.4012 31 1 2.6212 -1.9457 3.3707 32 1 0.0885 -1.6146 4.5760 33 1 0.0890 -3.1563 3.6863 34 1 1.5350 -4.9816 4.3629 35 1 2.7740 -6.0466 6.2046 36 1 3.3908 -4.7344 8.1948 37 1 1.5450 -1.2854 6.4905 38 1 3.1301 -0.7217 -1.2490 39 1 1.6767 -1.7490 -1.2493 40 1 2.8625 -1.8817 -4.7336 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000755771783.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:17 Heat of formation + Delta-G solvation = 42.721647 kcal Electronic energy + Delta-G solvation = -20052.730083 eV Core-core repulsion = 16893.565352 eV Total energy + Delta-G solvation = -3159.164730 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.119 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.80030 -37.56761 -36.85671 -35.51307 -33.18863 -32.10554 -31.11553 -29.62565 -26.99288 -26.32101 -25.42429 -23.61336 -23.04360 -21.69994 -21.26972 -18.11455 -17.23427 -16.42357 -16.13211 -15.98810 -15.79681 -15.06142 -14.52538 -14.19474 -13.84820 -13.61863 -13.35527 -13.24737 -13.01578 -12.71274 -12.01695 -11.89167 -11.84358 -11.75617 -11.41201 -11.16077 -11.05412 -10.95459 -10.75005 -10.72419 -10.52461 -10.18942 -9.87282 -9.44447 -9.33409 -9.20302 -9.07858 -8.85382 -8.31782 -7.52294 -5.96086 -3.96560 0.73281 0.84752 1.77000 2.92696 3.04279 3.33680 3.41665 3.45044 3.58798 4.32756 4.44405 4.49717 4.68727 4.88095 4.96176 5.14532 5.39278 5.40088 5.53698 5.55221 5.63135 5.80336 5.83765 5.94403 6.06655 6.11538 6.18809 6.38923 6.44875 6.54382 6.71548 6.81237 6.90075 7.15190 7.22849 7.30661 7.46486 7.70401 7.83449 8.03752 8.45555 8.95299 9.08693 9.66294 11.15556 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.031729 B = 0.002394 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.255010 B =11694.334126 C =12090.545144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.008 4.008 3 C -0.122 4.122 4 C 0.067 3.933 5 N -0.247 5.247 6 N -0.681 5.681 7 C 0.206 3.794 8 C -0.088 4.088 9 C -0.094 4.094 10 C -0.110 4.110 11 C -0.107 4.107 12 C -0.038 4.038 13 Cl -0.072 7.072 14 C -0.091 4.091 15 C 0.039 3.961 16 C -0.507 4.507 17 H 0.062 0.938 18 C 0.055 3.945 19 N -0.897 5.897 20 Si 0.888 3.112 21 H -0.272 1.272 22 H -0.286 1.286 23 H -0.286 1.286 24 H 0.034 0.966 25 H 0.060 0.940 26 H 0.048 0.952 27 H 0.047 0.953 28 H 0.071 0.929 29 H 0.032 0.968 30 H 0.089 0.911 31 H 0.369 0.631 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.133 0.867 35 H 0.134 0.866 36 H 0.133 0.867 37 H 0.135 0.865 38 H 0.017 0.983 39 H 0.017 0.983 40 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.218 -4.352 23.026 23.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.010 4.010 3 C -0.180 4.180 4 C -0.149 4.149 5 N -0.049 5.049 6 N -0.420 5.420 7 C 0.081 3.919 8 C -0.089 4.089 9 C -0.113 4.113 10 C -0.128 4.128 11 C -0.126 4.126 12 C -0.065 4.065 13 Cl -0.043 7.043 14 C -0.110 4.110 15 C 0.001 3.999 16 C -0.545 4.545 17 H 0.080 0.920 18 C -0.146 4.146 19 N -0.537 5.537 20 Si 0.717 3.283 21 H -0.197 1.197 22 H -0.212 1.212 23 H -0.212 1.212 24 H 0.053 0.947 25 H 0.079 0.921 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.090 0.910 29 H 0.052 0.948 30 H 0.107 0.893 31 H 0.206 0.794 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.151 0.849 35 H 0.152 0.848 36 H 0.151 0.849 37 H 0.153 0.847 38 H 0.035 0.965 39 H 0.036 0.964 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.244 -4.570 23.368 23.843 hybrid contribution 1.206 0.285 -0.668 1.408 sum -0.038 -4.284 22.700 23.101 Atomic orbital electron populations 1.21569 0.94402 1.01295 0.99970 1.19624 0.95960 0.94369 0.91094 1.21703 1.00313 0.95272 1.00762 1.26034 0.95709 0.97776 0.95405 1.73709 1.29548 1.06485 0.95207 1.47948 1.05712 1.66460 1.21902 1.19650 0.90280 0.96449 0.85506 1.19959 0.99581 0.94065 0.95322 1.21304 0.96763 0.94413 0.98813 1.21158 0.98241 1.00309 0.93073 1.21112 1.00198 0.92167 0.99134 1.20927 1.02423 0.92872 0.90270 1.98378 1.91864 1.73625 1.40425 1.21037 0.97374 1.00557 0.92068 1.19122 0.96184 0.95307 0.89316 1.21253 1.30833 1.12025 0.90401 0.92013 1.25009 0.95367 0.95106 0.99072 1.69976 1.37230 1.23225 1.23233 0.86591 0.78588 0.79740 0.83418 1.19690 1.21185 1.21189 0.94669 0.92101 0.93322 0.93429 0.91022 0.94846 0.89349 0.79411 0.91993 0.91755 0.84936 0.84814 0.84922 0.84709 0.96471 0.96443 0.93189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.26 7.45 37.16 0.28 -1.99 16 2 C -0.01 -0.16 0.75 -155.66 -0.12 -0.28 16 3 C -0.12 -2.25 8.20 37.16 0.30 -1.95 16 4 C 0.07 1.23 9.56 -13.87 -0.13 1.10 16 5 N -0.25 -4.35 10.16 32.67 0.33 -4.02 16 6 N -0.68 -9.84 6.62 -11.65 -0.08 -9.91 16 7 C 0.21 2.40 6.80 -5.19 -0.04 2.36 16 8 C -0.09 -0.87 5.25 -104.63 -0.55 -1.41 16 9 C -0.09 -0.83 9.70 -39.58 -0.38 -1.22 16 10 C -0.11 -0.84 10.05 -39.59 -0.40 -1.24 16 11 C -0.11 -0.86 9.83 -39.55 -0.39 -1.25 16 12 C -0.04 -0.35 6.32 -39.50 -0.25 -0.60 16 13 Cl -0.07 -0.64 28.96 -51.86 -1.50 -2.14 16 14 C -0.09 -0.88 9.49 -39.55 -0.38 -1.25 16 15 C 0.04 0.97 4.02 -27.88 -0.11 0.86 16 16 C -0.51 -13.58 7.65 -34.44 -0.26 -13.84 16 17 H 0.06 1.60 5.68 -52.48 -0.30 1.30 16 18 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 19 N -0.90 -26.51 13.29 55.43 0.74 -25.78 16 20 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 21 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 24 H 0.03 0.63 8.06 -51.93 -0.42 0.21 16 25 H 0.06 1.24 6.62 -51.93 -0.34 0.89 16 26 H 0.05 0.99 8.06 -51.93 -0.42 0.57 16 27 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.07 1.39 6.62 -51.93 -0.34 1.04 16 29 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.09 1.53 8.00 -52.49 -0.42 1.11 16 31 H 0.37 5.01 8.40 -182.60 -1.53 3.48 16 32 H 0.06 0.71 8.09 -51.93 -0.42 0.29 16 33 H 0.06 0.76 8.08 -51.93 -0.42 0.34 16 34 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 35 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 36 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 37 H 0.14 1.24 8.06 -52.48 -0.42 0.81 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 351.12 15.07 5.29 5.29 Total: -1.00 -29.55 351.12 -9.89 -39.45 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -7.13 Total: 0.13 kcal Atomic # 6 Polarization: -16.74 SS G_CDS: -2.52 Total: -19.26 kcal Atomic # 7 Polarization: -40.70 SS G_CDS: 0.99 Total: -39.71 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -1.50 Total: -2.14 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.55 -9.89 -39.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755771783.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.170 kcal (2) G-P(sol) polarization free energy of solvation -29.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds