Wall clock time and date at job start Tue Mar 31 2020 06:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52996 * 109.47041 * 2 1 4 4 C 1.50700 * 109.46921 * 120.00218 * 2 1 3 5 5 N 1.28014 * 119.99872 * 0.02562 * 4 2 1 6 6 N 1.40104 * 119.99535 * 180.02562 * 5 4 2 7 7 C 1.46506 * 119.99589 * 179.97438 * 6 5 4 8 8 C 1.50699 * 109.46928 * 179.97438 * 7 6 5 9 9 C 1.38262 * 119.99465 * 269.72318 * 8 7 6 10 10 C 1.38221 * 120.02890 * 179.76993 * 9 8 7 11 11 C 1.38240 * 120.00891 * 0.50578 * 10 9 8 12 12 C 1.38330 * 119.98851 * 359.74508 * 11 10 9 13 13 Cl 1.73598 * 120.01426 * 180.02562 * 12 11 10 14 14 C 1.38193 * 119.99362 * 89.99622 * 8 7 6 15 15 C 1.52998 * 109.47021 * 239.99996 * 2 1 3 16 16 C 1.50701 * 109.47419 * 60.00122 * 15 2 1 17 17 H 1.08006 * 119.99747 * 359.97438 * 16 15 2 18 18 C 1.37873 * 120.00198 * 179.97438 * 16 15 2 19 19 N 1.31512 * 120.00354 * 359.97438 * 18 16 15 20 20 Si 1.86808 * 119.99735 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47094 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47268 * 119.99792 * 20 18 16 23 23 H 1.48503 * 109.46841 * 239.99673 * 20 18 16 24 24 H 1.08995 * 109.46784 * 299.99867 * 1 2 3 25 25 H 1.08996 * 109.46812 * 60.00169 * 1 2 3 26 26 H 1.08993 * 109.46738 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46562 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.47637 * 299.99881 * 3 2 1 29 29 H 1.09000 * 109.46797 * 60.00358 * 3 2 1 30 30 H 1.07999 * 119.99988 * 179.97438 * 4 2 1 31 31 H 0.96999 * 120.00331 * 359.97438 * 6 5 4 32 32 H 1.09004 * 109.47073 * 299.99530 * 7 6 5 33 33 H 1.09000 * 109.47212 * 59.99612 * 7 6 5 34 34 H 1.08000 * 119.98245 * 359.97438 * 9 8 7 35 35 H 1.08000 * 119.99505 * 180.25268 * 10 9 8 36 36 H 1.07998 * 120.00377 * 179.77005 * 11 10 9 37 37 H 1.08006 * 120.00895 * 359.96140 * 14 8 7 38 38 H 1.09004 * 109.47239 * 180.02562 * 15 2 1 39 39 H 1.09006 * 109.47458 * 300.00338 * 15 2 1 40 40 H 0.96996 * 120.00379 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 1.2305 5 7 1.2005 -1.1974 2.0728 6 7 1.6675 -1.8574 3.2170 7 6 0.7154 -2.4142 4.1813 8 6 1.4689 -3.0668 5.3115 9 6 1.8095 -4.4046 5.2336 10 6 2.5047 -5.0027 6.2678 11 6 2.8508 -4.2661 7.3852 12 6 2.5058 -2.9289 7.4660 13 17 2.9406 -2.0031 8.8687 14 6 1.8144 -2.3295 6.4281 15 6 2.0401 -0.7212 -1.2492 16 6 1.5378 -0.0109 -2.4797 17 1 0.9165 0.8671 -2.3806 18 6 1.8713 -0.4816 -3.7320 19 7 2.6282 -1.5503 -3.8527 20 14 1.2492 0.3995 -5.2572 21 1 0.4236 1.5657 -4.8530 22 1 2.4044 0.8664 -6.0650 23 1 0.4245 -0.5337 -6.0661 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0276 -0.0005 27 1 3.1300 1.4424 0.0005 28 1 1.6768 1.9564 -0.8899 29 1 1.6768 1.9562 0.8900 30 1 3.0942 -0.8095 1.4012 31 1 2.6212 -1.9457 3.3707 32 1 0.0885 -1.6146 4.5760 33 1 0.0890 -3.1563 3.6863 34 1 1.5350 -4.9816 4.3629 35 1 2.7740 -6.0466 6.2046 36 1 3.3908 -4.7344 8.1948 37 1 1.5450 -1.2854 6.4905 38 1 3.1301 -0.7217 -1.2490 39 1 1.6767 -1.7490 -1.2493 40 1 2.8625 -1.8817 -4.7336 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000755771783.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:16 Heat of formation + Delta-G solvation = 27.944394 kcal Electronic energy + Delta-G solvation = -20053.370873 eV Core-core repulsion = 16893.565352 eV Total energy + Delta-G solvation = -3159.805520 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.119 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.50573 -39.06689 -37.59811 -36.82805 -34.66682 -33.70470 -31.79038 -30.70676 -28.92861 -27.86553 -26.52516 -25.39773 -23.71093 -22.88577 -22.43834 -19.57218 -18.29856 -18.06408 -17.61960 -16.72592 -16.69914 -16.42573 -16.08080 -15.11526 -14.99060 -14.81300 -14.52181 -14.40358 -14.35835 -13.96617 -13.91897 -13.06527 -12.79539 -12.68471 -12.60684 -12.55663 -12.45668 -12.43290 -12.26794 -12.23367 -11.99179 -11.85023 -11.54562 -11.03304 -10.99045 -10.66043 -10.46844 -10.03368 -9.76360 -8.77556 -8.09532 -6.16548 0.03276 0.17434 1.08904 1.44951 1.45747 1.49482 1.58634 2.07477 2.48845 2.70683 3.24911 3.54516 3.80699 4.03325 4.08024 4.20289 4.24306 4.26386 4.44590 4.47708 4.57121 4.63139 4.76118 4.88460 4.95965 5.06220 5.14883 5.17818 5.22029 5.29162 5.38513 5.46331 5.51189 5.55647 5.62073 5.67851 5.74469 5.90916 5.95687 6.30812 6.37583 6.98097 7.50681 7.63726 9.02901 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.031729 B = 0.002394 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.255010 B =11694.334126 C =12090.545144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.003 4.003 3 C -0.116 4.116 4 C 0.051 3.949 5 N -0.251 5.251 6 N -0.675 5.675 7 C 0.205 3.795 8 C -0.095 4.095 9 C -0.100 4.100 10 C -0.106 4.106 11 C -0.105 4.105 12 C -0.049 4.049 13 Cl -0.072 7.072 14 C -0.098 4.098 15 C 0.047 3.953 16 C -0.511 4.511 17 H 0.071 0.929 18 C -0.004 4.004 19 N -0.938 5.938 20 Si 0.956 3.044 21 H -0.258 1.258 22 H -0.283 1.283 23 H -0.285 1.285 24 H 0.054 0.946 25 H 0.051 0.949 26 H 0.033 0.967 27 H 0.049 0.951 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.097 0.903 31 H 0.375 0.625 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.138 0.862 35 H 0.160 0.840 36 H 0.152 0.848 37 H 0.134 0.866 38 H -0.006 1.006 39 H -0.018 1.018 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.539 -4.063 24.254 24.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.006 4.006 3 C -0.175 4.175 4 C -0.165 4.165 5 N -0.054 5.054 6 N -0.414 5.414 7 C 0.082 3.918 8 C -0.097 4.097 9 C -0.119 4.119 10 C -0.124 4.124 11 C -0.124 4.124 12 C -0.075 4.075 13 Cl -0.043 7.043 14 C -0.117 4.117 15 C 0.009 3.991 16 C -0.549 4.549 17 H 0.089 0.911 18 C -0.200 4.200 19 N -0.580 5.580 20 Si 0.782 3.218 21 H -0.182 1.182 22 H -0.209 1.209 23 H -0.212 1.212 24 H 0.073 0.927 25 H 0.070 0.930 26 H 0.052 0.948 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.115 0.885 31 H 0.212 0.788 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.156 0.844 35 H 0.178 0.822 36 H 0.170 0.830 37 H 0.152 0.848 38 H 0.012 0.988 39 H 0.000 1.000 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.576 -4.268 24.616 25.033 hybrid contribution 1.300 0.097 -0.906 1.587 sum -0.276 -4.171 23.710 24.075 Atomic orbital electron populations 1.21461 0.93981 1.00445 1.00413 1.19411 0.96171 0.95132 0.89874 1.21630 1.00474 0.93977 1.01390 1.25696 0.96093 0.99252 0.95475 1.73554 1.30273 1.05695 0.95914 1.48096 1.06672 1.65565 1.21097 1.19752 0.90100 0.96493 0.85464 1.19768 1.00512 0.94552 0.94854 1.21467 0.96795 0.94083 0.99509 1.21453 0.97175 1.01485 0.92249 1.21409 0.99564 0.91694 0.99728 1.21051 1.02761 0.93486 0.90241 1.98377 1.91855 1.73763 1.40352 1.21058 0.97702 1.00658 0.92285 1.18953 0.94569 0.93878 0.91697 1.21638 1.30167 1.12027 0.91089 0.91066 1.25902 0.95708 0.95882 1.02542 1.70115 1.38900 1.25015 1.23955 0.85519 0.78093 0.78841 0.79346 1.18184 1.20873 1.21165 0.92663 0.93020 0.94793 0.93210 0.92138 0.92323 0.88548 0.78785 0.91757 0.91857 0.84399 0.82230 0.82994 0.84766 0.98781 0.99967 0.93210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.11 7.45 71.99 0.54 -3.57 16 2 C 0.00 -0.14 0.75 -52.93 -0.04 -0.18 16 3 C -0.12 -4.17 8.20 71.98 0.59 -3.58 16 4 C 0.05 1.86 9.56 88.67 0.85 2.71 16 5 N -0.25 -8.66 10.16 -50.46 -0.51 -9.17 16 6 N -0.67 -18.84 6.62 -190.77 -1.26 -20.10 16 7 C 0.21 4.59 6.80 85.63 0.58 5.17 16 8 C -0.10 -1.76 5.25 -19.87 -0.10 -1.87 16 9 C -0.10 -1.60 9.70 22.27 0.22 -1.38 16 10 C -0.11 -1.35 10.05 22.27 0.22 -1.13 16 11 C -0.11 -1.44 9.83 22.29 0.22 -1.22 16 12 C -0.05 -0.82 6.32 22.32 0.14 -0.68 16 13 Cl -0.07 -1.19 28.96 -2.72 -0.08 -1.27 16 14 C -0.10 -1.77 9.49 22.29 0.21 -1.56 16 15 C 0.05 2.42 4.02 29.85 0.12 2.55 16 16 C -0.51 -27.65 7.65 25.60 0.20 -27.46 16 17 H 0.07 3.65 5.68 -2.91 -0.02 3.64 16 18 C 0.00 -0.21 5.46 84.65 0.46 0.26 16 19 N -0.94 -56.76 13.29 21.45 0.28 -56.47 16 20 Si 0.96 43.76 29.54 68.60 2.03 45.79 16 21 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 22 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 23 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 24 H 0.05 1.90 8.06 -2.39 -0.02 1.88 16 25 H 0.05 2.07 6.62 -2.39 -0.02 2.05 16 26 H 0.03 1.38 8.06 -2.39 -0.02 1.36 16 27 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.06 2.27 6.62 -2.39 -0.02 2.26 16 29 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.10 3.31 8.00 -2.91 -0.02 3.29 16 31 H 0.37 9.81 8.40 -213.32 -1.79 8.02 16 32 H 0.06 1.41 8.09 -2.38 -0.02 1.39 16 33 H 0.06 1.44 8.08 -2.39 -0.02 1.42 16 34 H 0.14 2.02 8.06 -2.91 -0.02 2.00 16 35 H 0.16 1.19 8.06 -2.91 -0.02 1.17 16 36 H 0.15 1.46 8.06 -2.91 -0.02 1.43 16 37 H 0.13 2.36 8.06 -2.91 -0.02 2.34 16 38 H -0.01 -0.34 8.14 -2.38 -0.02 -0.36 16 39 H -0.02 -1.04 8.14 -2.38 -0.02 -1.06 16 40 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 Total: -1.00 -63.42 351.12 3.90 -59.52 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -0.76 Total: 13.65 kcal Atomic # 6 Polarization: -36.14 SS G_CDS: 4.20 Total: -31.94 kcal Atomic # 7 Polarization: -84.26 SS G_CDS: -1.49 Total: -85.75 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 17 Polarization: -1.19 SS G_CDS: -0.08 Total: -1.27 kcal Total: -63.42 3.90 -59.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755771783.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.466 kcal (2) G-P(sol) polarization free energy of solvation -63.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds