Wall clock time and date at job start Tue Mar 31 2020 06:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46886 * 2 1 4 4 C 1.53000 * 109.46886 * 180.02562 * 3 2 1 5 5 O 1.42903 * 109.46726 * 180.02562 * 4 3 2 6 6 C 1.35652 * 116.99750 * 180.02562 * 5 4 3 7 7 C 1.38457 * 120.18588 * 359.72319 * 6 5 4 8 8 C 1.38721 * 119.91390 * 179.81337 * 7 6 5 9 9 O 1.35705 * 119.85894 * 180.18693 * 8 7 6 10 10 C 1.42903 * 117.00011 * 180.24943 * 9 8 7 11 11 C 1.39200 * 120.28591 * 0.44396 * 8 7 6 12 12 C 1.36517 * 120.38155 * 359.79005 * 11 8 7 13 13 C 1.39933 * 120.07978 * 359.97438 * 12 11 8 14 14 C 1.47112 * 120.14225 * 179.97438 * 13 12 11 15 15 O 1.21577 * 119.99564 * 180.02562 * 14 13 12 16 16 O 1.34805 * 119.99930 * 0.02562 * 14 13 12 17 17 C 1.34875 * 116.99681 * 179.97438 * 16 14 13 18 18 H 1.08007 * 119.99817 * 0.02562 * 17 16 14 19 19 C 1.38779 * 120.00357 * 179.97438 * 17 16 14 20 20 N 1.31437 * 119.99425 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00347 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46870 * 90.00425 * 21 19 17 23 23 H 1.48499 * 109.47181 * 210.00375 * 21 19 17 24 24 H 1.48496 * 109.47125 * 330.00413 * 21 19 17 25 25 H 1.09004 * 109.46724 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47098 * 299.99158 * 1 2 3 27 27 H 1.09001 * 109.47583 * 60.00267 * 1 2 3 28 28 H 1.09001 * 109.46741 * 240.00394 * 2 1 3 29 29 H 1.09002 * 109.47398 * 120.00496 * 2 1 3 30 30 H 1.09001 * 109.46652 * 60.00345 * 3 2 1 31 31 H 1.08992 * 109.47514 * 300.00434 * 3 2 1 32 32 H 1.09002 * 109.47398 * 300.00496 * 4 3 2 33 33 H 1.09001 * 109.47194 * 60.00677 * 4 3 2 34 34 H 1.08003 * 120.04586 * 0.02562 * 7 6 5 35 35 H 1.08992 * 109.47641 * 300.00556 * 10 9 8 36 36 H 1.09000 * 109.47005 * 60.00855 * 10 9 8 37 37 H 1.09005 * 109.46546 * 180.02562 * 10 9 8 38 38 H 1.08000 * 119.80705 * 179.76473 * 11 8 7 39 39 H 1.08006 * 119.96180 * 179.97438 * 12 11 8 40 40 H 0.97004 * 119.99976 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 8 4.0462 2.7899 0.0000 6 6 5.3910 2.9676 -0.0010 7 6 6.2380 1.8724 0.0032 8 6 7.6124 2.0607 -0.0018 9 8 8.4415 0.9864 -0.0014 10 6 9.8459 1.2507 -0.0012 11 6 8.1448 3.3469 -0.0017 12 6 7.3206 4.4352 -0.0011 13 6 5.9319 4.2634 -0.0010 14 6 5.0425 5.4352 0.0002 15 8 3.8364 5.2828 0.0007 16 8 5.5650 6.6779 0.0008 17 6 4.6945 7.7081 0.0014 18 1 3.6315 7.5168 0.0018 19 6 5.1645 9.0138 0.0026 20 7 6.4581 9.2465 0.0026 21 14 3.9589 10.4406 0.0041 22 1 3.6397 10.8174 1.4047 23 1 4.5653 11.6019 -0.6950 24 1 2.7131 10.0367 -0.6959 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9564 -0.8899 32 1 3.9337 0.9285 0.8891 33 1 3.9329 0.9289 -0.8909 34 1 5.8293 0.8727 0.0069 35 1 10.1082 1.8228 -0.8910 36 1 10.1077 1.8229 0.8889 37 1 10.3930 0.3079 -0.0014 38 1 9.2159 3.4845 -0.0017 39 1 7.7410 5.4301 -0.0006 40 1 6.7868 10.1592 0.0030 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000769204036.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:32 Heat of formation + Delta-G solvation = -139.744137 kcal Electronic energy + Delta-G solvation = -23279.115450 eV Core-core repulsion = 19639.036493 eV Total energy + Delta-G solvation = -3640.078956 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.43019 -39.05350 -38.47762 -36.45041 -35.05361 -34.81869 -32.06794 -30.76398 -30.20288 -28.78415 -27.42904 -25.35105 -24.16621 -23.02847 -21.69372 -21.17929 -20.07041 -18.53147 -17.61042 -16.93833 -16.47159 -16.32100 -16.00310 -15.76236 -14.97249 -14.78527 -14.58201 -14.26155 -14.19006 -14.00369 -13.50701 -13.07424 -12.83047 -12.79376 -12.35598 -12.08164 -12.07043 -11.82689 -11.47285 -11.32848 -11.26030 -11.10444 -11.02988 -10.76173 -10.76135 -10.39642 -10.37359 -10.22066 -9.72260 -8.83378 -8.49882 -8.44665 -7.82637 -6.35323 -3.97665 1.29357 1.64649 3.12499 3.18522 3.23564 3.29997 3.40903 3.53300 4.01397 4.39673 4.65143 4.79947 4.80315 4.88443 4.96080 5.07351 5.07853 5.15175 5.16631 5.23395 5.25047 5.35906 5.43174 5.49082 5.64040 5.65507 5.69035 5.75013 5.84543 6.01170 6.10286 6.13624 6.25773 6.42897 6.62133 6.77931 7.02179 7.34125 7.46766 7.70882 8.04458 8.86173 9.14571 9.98834 10.83405 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.009931 B = 0.004929 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2818.725666 B = 5679.077205 C = 8461.449500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.119 4.119 4 C 0.051 3.949 5 O -0.269 6.269 6 C 0.214 3.786 7 C -0.261 4.261 8 C 0.177 3.823 9 O -0.317 6.317 10 C 0.027 3.973 11 C -0.256 4.256 12 C 0.006 3.994 13 C -0.161 4.161 14 C 0.444 3.556 15 O -0.536 6.536 16 O -0.215 6.215 17 C -0.370 4.370 18 H 0.096 0.904 19 C 0.039 3.961 20 N -0.867 5.867 21 Si 0.943 3.057 22 H -0.274 1.274 23 H -0.279 1.279 24 H -0.267 1.267 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.137 0.863 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.097 0.903 38 H 0.132 0.868 39 H 0.151 0.849 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.463 -17.923 -0.014 17.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.157 4.157 4 C -0.024 4.024 5 O -0.180 6.180 6 C 0.166 3.834 7 C -0.280 4.280 8 C 0.131 3.869 9 O -0.230 6.230 10 C -0.068 4.068 11 C -0.275 4.275 12 C -0.012 4.012 13 C -0.164 4.164 14 C 0.291 3.709 15 O -0.432 6.432 16 O -0.123 6.123 17 C -0.447 4.447 18 H 0.113 0.887 19 C -0.164 4.164 20 N -0.504 5.504 21 Si 0.767 3.233 22 H -0.200 1.200 23 H -0.204 1.204 24 H -0.191 1.191 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.155 0.845 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.116 0.884 38 H 0.149 0.851 39 H 0.169 0.831 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.074 -17.825 -0.019 17.858 hybrid contribution -0.092 0.649 0.009 0.656 sum 0.983 -17.176 -0.010 17.204 Atomic orbital electron populations 1.21747 0.95334 1.01522 1.02284 1.21431 0.96332 0.95880 1.02109 1.21547 0.92524 0.97208 1.04384 1.22915 0.95767 0.82632 1.01104 1.86446 1.17483 1.27681 1.86414 1.18618 0.82716 0.91754 0.90295 1.20182 0.90823 0.98671 1.18328 1.18842 0.89549 0.85924 0.92612 1.85977 1.17622 1.31241 1.88204 1.23081 0.78694 1.03187 1.01879 1.20831 1.00684 0.91424 1.14527 1.21006 0.91055 0.99843 0.89300 1.18739 0.93195 0.89670 1.14755 1.20379 0.86831 0.84161 0.79502 1.90678 1.15709 1.86613 1.50214 1.83905 1.39616 1.12573 1.76198 1.21248 0.89903 0.82436 1.51100 0.88686 1.25309 0.96921 0.97641 0.96547 1.69984 1.12277 1.21226 1.46930 0.85682 0.79542 0.79368 0.78674 1.19954 1.20408 1.19108 0.92727 0.92483 0.92488 0.91852 0.91848 0.90539 0.90544 0.92153 0.92147 0.84478 0.92328 0.92323 0.88423 0.85053 0.83127 0.92190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.91 37.16 0.37 -0.92 16 2 C -0.12 -1.10 5.93 -26.73 -0.16 -1.26 16 3 C -0.12 -1.46 5.58 -26.73 -0.15 -1.61 16 4 C 0.05 0.70 4.74 37.16 0.18 0.88 16 5 O -0.27 -5.23 8.21 -40.56 -0.33 -5.56 16 6 C 0.21 4.14 6.70 -38.68 -0.26 3.88 16 7 C -0.26 -4.14 8.97 -39.32 -0.35 -4.50 16 8 C 0.18 2.67 6.69 -39.05 -0.26 2.41 16 9 O -0.32 -4.09 10.48 -18.82 -0.20 -4.29 16 10 C 0.03 0.23 9.80 101.05 0.99 1.22 16 11 C -0.26 -3.93 8.96 -39.85 -0.36 -4.28 16 12 C 0.01 0.12 9.55 -39.57 -0.38 -0.26 16 13 C -0.16 -3.54 5.89 -104.85 -0.62 -4.16 16 14 C 0.44 11.99 7.82 34.33 0.27 12.26 16 15 O -0.54 -15.50 14.40 -26.66 -0.38 -15.88 16 16 O -0.21 -6.37 8.98 -21.90 -0.20 -6.57 16 17 C -0.37 -11.26 9.65 30.93 0.30 -10.96 16 18 H 0.10 2.92 6.86 -52.48 -0.36 2.56 16 19 C 0.04 1.12 5.49 -17.52 -0.10 1.02 16 20 N -0.87 -25.55 13.67 55.48 0.76 -24.79 16 21 Si 0.94 21.72 29.55 -169.99 -5.02 16.69 16 22 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 23 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 24 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.06 0.72 7.65 -51.93 -0.40 0.33 16 33 H 0.06 0.73 7.67 -51.93 -0.40 0.33 16 34 H 0.14 1.83 6.31 -52.48 -0.33 1.50 16 35 H 0.06 0.47 7.65 -51.93 -0.40 0.08 16 36 H 0.06 0.47 7.65 -51.93 -0.40 0.08 16 37 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.13 1.61 6.26 -52.49 -0.33 1.28 16 39 H 0.15 2.94 7.60 -52.48 -0.40 2.54 16 40 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 343.40 15.07 5.17 5.17 Total: -1.00 -35.13 343.40 -6.25 -41.38 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -5.53 Total: 0.12 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: -0.53 Total: -6.27 kcal Atomic # 7 Polarization: -25.55 SS G_CDS: 0.76 Total: -24.79 kcal Atomic # 8 Polarization: -31.20 SS G_CDS: -1.11 Total: -32.31 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -35.13 -6.25 -41.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769204036.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.362 kcal (2) G-P(sol) polarization free energy of solvation -35.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds