Wall clock time and date at job start Tue Mar 31 2020 06:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46886 * 2 1 4 4 C 1.53000 * 109.46886 * 180.02562 * 3 2 1 5 5 O 1.42903 * 109.46726 * 180.02562 * 4 3 2 6 6 C 1.35652 * 116.99750 * 180.02562 * 5 4 3 7 7 C 1.38457 * 120.18588 * 359.72319 * 6 5 4 8 8 C 1.38721 * 119.91390 * 179.81337 * 7 6 5 9 9 O 1.35705 * 119.85894 * 180.18693 * 8 7 6 10 10 C 1.42903 * 117.00011 * 180.24943 * 9 8 7 11 11 C 1.39200 * 120.28591 * 0.44396 * 8 7 6 12 12 C 1.36517 * 120.38155 * 359.79005 * 11 8 7 13 13 C 1.39933 * 120.07978 * 359.97438 * 12 11 8 14 14 C 1.47112 * 120.14225 * 179.97438 * 13 12 11 15 15 O 1.21577 * 119.99564 * 180.02562 * 14 13 12 16 16 O 1.34805 * 119.99930 * 0.02562 * 14 13 12 17 17 C 1.34875 * 116.99681 * 179.97438 * 16 14 13 18 18 H 1.08007 * 119.99817 * 0.02562 * 17 16 14 19 19 C 1.38779 * 120.00357 * 179.97438 * 17 16 14 20 20 N 1.31437 * 119.99425 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00347 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46870 * 90.00425 * 21 19 17 23 23 H 1.48499 * 109.47181 * 210.00375 * 21 19 17 24 24 H 1.48496 * 109.47125 * 330.00413 * 21 19 17 25 25 H 1.09004 * 109.46724 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47098 * 299.99158 * 1 2 3 27 27 H 1.09001 * 109.47583 * 60.00267 * 1 2 3 28 28 H 1.09001 * 109.46741 * 240.00394 * 2 1 3 29 29 H 1.09002 * 109.47398 * 120.00496 * 2 1 3 30 30 H 1.09001 * 109.46652 * 60.00345 * 3 2 1 31 31 H 1.08992 * 109.47514 * 300.00434 * 3 2 1 32 32 H 1.09002 * 109.47398 * 300.00496 * 4 3 2 33 33 H 1.09001 * 109.47194 * 60.00677 * 4 3 2 34 34 H 1.08003 * 120.04586 * 0.02562 * 7 6 5 35 35 H 1.08992 * 109.47641 * 300.00556 * 10 9 8 36 36 H 1.09000 * 109.47005 * 60.00855 * 10 9 8 37 37 H 1.09005 * 109.46546 * 180.02562 * 10 9 8 38 38 H 1.08000 * 119.80705 * 179.76473 * 11 8 7 39 39 H 1.08006 * 119.96180 * 179.97438 * 12 11 8 40 40 H 0.97004 * 119.99976 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 8 4.0462 2.7899 0.0000 6 6 5.3910 2.9676 -0.0010 7 6 6.2380 1.8724 0.0032 8 6 7.6124 2.0607 -0.0018 9 8 8.4415 0.9864 -0.0014 10 6 9.8459 1.2507 -0.0012 11 6 8.1448 3.3469 -0.0017 12 6 7.3206 4.4352 -0.0011 13 6 5.9319 4.2634 -0.0010 14 6 5.0425 5.4352 0.0002 15 8 3.8364 5.2828 0.0007 16 8 5.5650 6.6779 0.0008 17 6 4.6945 7.7081 0.0014 18 1 3.6315 7.5168 0.0018 19 6 5.1645 9.0138 0.0026 20 7 6.4581 9.2465 0.0026 21 14 3.9589 10.4406 0.0041 22 1 3.6397 10.8174 1.4047 23 1 4.5653 11.6019 -0.6950 24 1 2.7131 10.0367 -0.6959 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9564 -0.8899 32 1 3.9337 0.9285 0.8891 33 1 3.9329 0.9289 -0.8909 34 1 5.8293 0.8727 0.0069 35 1 10.1082 1.8228 -0.8910 36 1 10.1077 1.8229 0.8889 37 1 10.3930 0.3079 -0.0014 38 1 9.2159 3.4845 -0.0017 39 1 7.7410 5.4301 -0.0006 40 1 6.7868 10.1592 0.0030 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000769204036.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:31 Heat of formation + Delta-G solvation = -161.564217 kcal Electronic energy + Delta-G solvation = -23280.061639 eV Core-core repulsion = 19639.036493 eV Total energy + Delta-G solvation = -3641.025146 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.82062 -40.63332 -40.08828 -37.76489 -36.99983 -35.95285 -34.27316 -32.10945 -31.41017 -29.94040 -28.36970 -27.41108 -25.24118 -24.58842 -22.90122 -22.28172 -21.64263 -19.84168 -19.73943 -18.76097 -17.71396 -17.46061 -17.30839 -16.88421 -16.70242 -16.41996 -16.14851 -15.71898 -15.60071 -15.42665 -14.65185 -14.42499 -14.09576 -13.90970 -13.75633 -13.49266 -13.21457 -13.15950 -13.02150 -12.86004 -12.39983 -12.18290 -12.12882 -12.10830 -12.04485 -11.96166 -11.83872 -11.67888 -11.43781 -10.95484 -10.67378 -9.74556 -9.24017 -8.53172 -6.29391 -0.18531 0.29743 1.33568 1.37673 1.51166 1.81906 1.99938 2.12367 2.28772 2.68616 2.80440 3.05795 3.63866 3.85040 3.88454 3.95351 4.01043 4.15422 4.26629 4.33253 4.33298 4.36532 4.45416 4.46018 4.62152 4.68279 4.80707 4.82287 4.90510 5.01309 5.02130 5.14087 5.18837 5.25151 5.30328 5.31142 5.41331 5.43398 5.85465 6.22021 6.40122 6.69722 6.92103 7.81629 8.68184 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.009931 B = 0.004929 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2818.725666 B = 5679.077205 C = 8461.449500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.112 4.112 3 C -0.118 4.118 4 C 0.043 3.957 5 O -0.307 6.307 6 C 0.213 3.787 7 C -0.255 4.255 8 C 0.200 3.800 9 O -0.315 6.315 10 C 0.011 3.989 11 C -0.244 4.244 12 C 0.005 3.995 13 C -0.212 4.212 14 C 0.441 3.559 15 O -0.568 6.568 16 O -0.240 6.240 17 C -0.418 4.418 18 H 0.077 0.923 19 C -0.003 4.003 20 N -0.901 5.901 21 Si 1.018 2.982 22 H -0.260 1.260 23 H -0.257 1.257 24 H -0.266 1.266 25 H 0.072 0.928 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.168 0.832 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.129 0.871 38 H 0.168 0.832 39 H 0.134 0.866 40 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.851 -20.187 0.007 20.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.149 4.149 3 C -0.156 4.156 4 C -0.032 4.032 5 O -0.219 6.219 6 C 0.165 3.835 7 C -0.275 4.275 8 C 0.153 3.847 9 O -0.228 6.228 10 C -0.082 4.082 11 C -0.262 4.262 12 C -0.014 4.014 13 C -0.214 4.214 14 C 0.290 3.710 15 O -0.466 6.466 16 O -0.149 6.149 17 C -0.494 4.494 18 H 0.095 0.905 19 C -0.203 4.203 20 N -0.538 5.538 21 Si 0.836 3.164 22 H -0.184 1.184 23 H -0.180 1.180 24 H -0.190 1.190 25 H 0.091 0.909 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.186 0.814 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.147 0.853 38 H 0.186 0.814 39 H 0.152 0.848 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.496 -20.127 0.005 20.281 hybrid contribution -0.374 1.079 0.002 1.142 sum 2.122 -19.048 0.007 19.166 Atomic orbital electron populations 1.21770 0.94968 1.02531 1.01791 1.21407 0.96594 0.93465 1.03443 1.21590 0.92021 0.99301 1.02686 1.23296 0.96266 0.80547 1.03043 1.86407 1.17884 1.31271 1.86337 1.18698 0.83309 0.91558 0.89945 1.20384 0.90976 0.98776 1.17314 1.18912 0.89781 0.86393 0.89624 1.86015 1.19600 1.30047 1.87088 1.23527 0.76216 1.05585 1.02915 1.21077 1.01985 0.90399 1.12745 1.20881 0.90227 1.00461 0.89821 1.18665 0.93824 0.88766 1.20192 1.21425 0.87469 0.84714 0.77353 1.90617 1.17369 1.87070 1.51570 1.83926 1.39943 1.13534 1.77486 1.21422 0.89542 0.83862 1.54583 0.90519 1.26511 0.99266 0.99762 0.94791 1.70062 1.14150 1.22682 1.46941 0.84634 0.76756 0.75435 0.79544 1.18416 1.18045 1.19045 0.90903 0.93039 0.93048 0.90457 0.90450 0.92295 0.92308 0.90026 0.90026 0.81431 0.91264 0.91261 0.85321 0.81416 0.84833 0.91155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 9.91 71.98 0.71 -1.72 16 2 C -0.11 -1.86 5.93 30.59 0.18 -1.68 16 3 C -0.12 -2.94 5.58 30.59 0.17 -2.77 16 4 C 0.04 1.13 4.74 71.98 0.34 1.47 16 5 O -0.31 -12.30 8.21 -68.73 -0.56 -12.87 16 6 C 0.21 8.33 6.70 22.85 0.15 8.48 16 7 C -0.26 -7.54 8.97 22.44 0.20 -7.34 16 8 C 0.20 5.41 6.69 22.62 0.15 5.56 16 9 O -0.32 -6.67 10.48 -90.25 -0.95 -7.62 16 10 C 0.01 0.14 9.80 113.37 1.11 1.25 16 11 C -0.24 -6.95 8.96 22.10 0.20 -6.75 16 12 C 0.00 0.18 9.55 22.28 0.21 0.39 16 13 C -0.21 -9.77 5.89 -20.01 -0.12 -9.88 16 14 C 0.44 25.62 7.82 70.15 0.55 26.17 16 15 O -0.57 -35.43 14.40 26.60 0.38 -35.04 16 16 O -0.24 -15.27 8.98 10.38 0.09 -15.18 16 17 C -0.42 -27.03 9.65 67.95 0.66 -26.38 16 18 H 0.08 5.07 6.86 -2.91 -0.02 5.05 16 19 C 0.00 -0.20 5.49 84.88 0.47 0.27 16 20 N -0.90 -54.56 13.67 21.63 0.30 -54.27 16 21 Si 1.02 45.29 29.55 68.60 2.03 47.32 16 22 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 23 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 24 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 25 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.08 1.79 7.65 -2.39 -0.02 1.77 16 33 H 0.08 1.79 7.67 -2.39 -0.02 1.78 16 34 H 0.17 3.84 6.31 -2.91 -0.02 3.83 16 35 H 0.07 0.78 7.65 -2.39 -0.02 0.76 16 36 H 0.07 0.78 7.65 -2.39 -0.02 0.76 16 37 H 0.13 0.90 8.14 -2.38 -0.02 0.88 16 38 H 0.17 3.49 6.26 -2.91 -0.02 3.47 16 39 H 0.13 5.53 7.60 -2.91 -0.02 5.51 16 40 H 0.28 15.23 8.31 -92.70 -0.77 14.46 16 Total: -1.00 -82.59 343.40 7.32 -75.27 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: 1.04 Total: 15.32 kcal Atomic # 6 Polarization: -17.92 SS G_CDS: 4.99 Total: -12.93 kcal Atomic # 7 Polarization: -54.56 SS G_CDS: 0.30 Total: -54.27 kcal Atomic # 8 Polarization: -69.68 SS G_CDS: -1.03 Total: -70.71 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -82.59 7.32 -75.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769204036.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.297 kcal (2) G-P(sol) polarization free energy of solvation -82.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds